IslandPathversion 1.0

An aid to the identification of genomics islands, including pathogenicity islands, of potentially horizontally transferred genes

See the help file for more information, plus analyses that illustrate the utility of IslandPath.

Select the islandbuttombutton below for a given organism to view a graphical representation of the organism's genome with some features commonly associated with genomic islands marked. These features include abnormal %G+C, dinucleotide bias, proximity to tRNA and other structural RNA and the presence of mobility genes (transposases and integrases). Plain text tables of the ORF %G+C data and ORF-cluster dinucleotide bias data are also available by request. A cautionary note: This analysis does not definitely identify islands of horizontally transferred genes, but rather should be considered a guide for the identification of clusters of genes that are more likely to have horizontal origins. A reminder that such analysis only identifies a subset of potential recent horizontal transfers (i.e. those that involve genetic exchange between organisms of differing DNA signatures). See the publication associated with IslandPath for further information (William Hsiao, Ivan Wan, Steven J. Jones, and Fiona S.L. Brinkman, Bioinformatics, Feb 2003 PMID:12584130). We thank the National Centre for Biotechnology Information (NCBI), particularly Tatiana Tatusov, for providing helpful files for IslandPath and acknowledge the efforts of the many microbial and other genome projects that have made such an analysis possible.

IslandPath is maintained by William Hsiao of the Brinkman Laboratory at Simon Fraser University, BC, Canada. Email islandpath-mail@sfu.ca with any questions/comments. If you wish to be notified of changes to islandpath, you can subscribe to the islandpath-update mailing list by sending an email to maillist@sfu.ca with "subscribe islandpath-update" in the subject or body of the message.

The tables below list organisms according to a measure of %G+C variance in the genome. You may also view this data alphabetically. The gene G+C variance for a bacterial genome appears to reflect the number of incidences of recent horizontal gene exchange with organisms of differing G+C ratios, for extreme cases.


Pathogenic Bacteria

Organism Approximate host range "Primary" Disease Habitat No. of protein coding ORFs %G+C Mean (all ORFs) %G+C S.D. (all ORFs)

%G+C Mean
(ORFs >300bp)

%G+C S.D.
(ORFs >300bp)

Genome Dinucleotide Bias Mean

 Genome Dinucleotide Bias S.D.

Interactive Graphical View of ORFs
Chlamydia trachomatis 434/Bu, complete genome Human Lymphogranuloma vernerum Host-associated 874 41.55 2.29 41.63 2.18 39.06 14.73
Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome Human Lymphogranuloma vernerum, proctitis Host-associated 874 41.55 2.30 41.63 2.19 39.00 14.67
Chlamydia muridarum Nigg, complete genome Human, Animal Pharyngitis, bronchitis and pneumonitis Host-associated 904 40.58 2.58 40.75 2.20 38.75 14.38
Chlamydophila caviae GPIC, complete genome Human, Animal Pharyngitis, bronchitis and pneumonitis Host-associated 998 39.42 2.69 39.69 2.22 39.90 14.77
Chlamydia trachomatis D/UW-3/CX, complete genome Human Pharyngitis, bronchitis and pneumonitis Host-associated 895 41.53 2.32 41.62 2.22 39.59 14.53
Chlamydia trachomatis A/HAR-13, complete genome Human Pharyngitis, bronchitis and pneumonitis Host-associated 911 41.51 2.37 41.62 2.22 39.91 14.81
Chlamydophila abortus S26/3, complete genome Human, Animal Pharyngitis, bronchitis and pneumonitis Host-associated 932 40.23 2.43 40.35 2.27 37.69 14.89
Chlamydophila felis Fe/C-56, complete genome Human, Animal Pharyngitis, bronchitis and pneumonitis Host-associated 1005 39.67 2.66 39.87 2.27 39.99 16.11
Renibacterium salmoninarum ATCC 33209, complete genome Salmonid fish Bacterial kidney disease (BKD) Host-associated 3507 56.28 2.77 56.49 2.38 38.56 14.73
Clostridium phage phiSM101, complete genome Human, Animal Gas gangrene Multiple 53 26.86 2.94 27.81 2.42 66.66 19.75
Chlamydophila pneumoniae J138, complete genome Human Pharyngitis, bronchitis and pneumonitis Host-associated 1069 40.89 2.77 41.08 2.53 39.87 16.56
Chlamydophila pneumoniae CWL029, complete genome Human Pharyngitis, bronchitis and pneumonitis Host-associated 1052 40.88 2.78 41.07 2.54 39.89 16.47
Chlamydophila pneumoniae AR39, complete genome Human Pharyngitis, bronchitis and pneumonitis Host-associated 1112 40.53 3.43 41.07 2.56 41.19 16.70
Chlamydophila pneumoniae TW-183, complete genome Human Pharyngitis, bronchitis and pneumonitis Host-associated 1113 40.62 3.18 41.05 2.58 40.39 16.41
Brucella abortus S19 chromosome 2, complete sequence Mammal Spontaneous abortion Multiple 1033 57.69 3.56 58.26 2.64 38.72 15.93
Anaplasma phagocytophilum HZ, complete genome Human, Animal Human granulocytic anaplasmosis Host-associated 1264 42.22 3.33 42.64 2.66 46.72 20.28
Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence Plant Tumors Multiple 2765 59.52 3.25 59.93 2.72 38.73 16.41
Neorickettsia sennetsu str. Miyayama, complete genome Human Sennetsu fever Multiple 932 41.12 3.36 41.55 2.72 39.27 15.42
Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 2, complete sequence Cattle, Human Leptospirosis Host-associated 235 41.05 2.74 41.14 2.73 41.17 16.19
Anaplasma marginale str. St. Maries, complete genome Cattle Bovine anaplasmosis Host-associated 949 49.65 2.84 49.65 2.73 42.92 20.53
Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence Plant N/A Multiple 2785 59.40 3.37 59.86 2.75 38.64 16.25
Bdellovibrio bacteriovorus HD100, complete genome Gram-negative bacteria Cell lysis Multiple 3587 50.40 3.19 50.68 2.75 40.38 16.54
Brucella ovis ATCC 25840 chromosome II, complete sequence Sheep Inflammation of the epididymis and placenta Host-associated 962 57.51 3.48 57.96 2.77 39.51 16.49
Brucella melitensis biovar Abortus 2308 chromosome II, complete sequence Human, cattle Brucellosis Host-associated 1034 57.35 3.92 58.18 2.78 38.67 14.51
Mycobacterium smegmatis str. MC2 155, complete genome Human Soft tissue lesions Host-associated 6716 67.48 3.10 67.73 2.80 40.77 14.95
Bartonella quintana str. Toulouse, complete genome Human Bacillary angiomatosis, Trench fever Host-associated 1142 40.09 2.94 40.15 2.80 40.18 17.48
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2, complete sequence Cattle, Human Leptospirosis Host-associated 242 40.96 2.80 41.04 2.80 41.16 16.98
Mycoplasma agalactiae PG2, complete genome Sheep, Goat Mastitis, arthritis, and pneumonia Host-associated 742 30.04 2.93 30.00 2.80 47.22 21.30
Pseudoalteromonas atlantica T6c, complete genome Shellfish Shell disease Aquatic 4281 45.02 2.89 45.13 2.81 38.84 16.40
Brucella melitensis 16M chromosome II, complete sequence Human, Animal Brucellosis Host-associated 1139 57.71 3.41 58.13 2.81 40.03 15.74
Vibrio harveyi ATCC BAA-1116 chromosome I, complete genome Vertebrate and invertebrate aquatic organisms Vibriosis Aquatic 3546 45.58 3.31 45.99 2.82 46.81 18.33
Mycobacterium abscessus chromosome Chromosome, complete sequence Human Lung, skin, and wound infections Multiple 4920 64.32 2.97 64.44 2.83 0.00 0.00
Ehrlichia ruminantium str. Gardel, complete genome Ruminant African heartwater Host-associated 950 30.14 3.39 30.43 2.85 44.63 18.35
Ehrlichia canis str. Jake, complete genome Dog Ehrlichiosis Host-associated 925 30.73 2.95 30.71 2.85 44.85 20.08
Ehrlichia ruminantium str. Welgevonden, complete genome Ruminant Heartwater Host-associated 888 30.51 2.94 30.48 2.86 43.39 18.10
Candidatus Protochlamydia amoebophila UWE25, complete genome Animal Probable pneumonia agent Host-associated 2031 35.65 3.38 36.08 2.86 42.68 18.08
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Human, Cattle Brucellosis Host-associated 1055 57.17 4.21 58.15 2.90 40.23 17.06
Orientia tsutsugamushi Boryong, complete genome Human Scrub typhus Host-associated 1182 30.84 3.12 31.04 2.91 47.22 18.08
Ehrlichia chaffeensis str. Arkansas, complete genome Human, Animal Monocytic ehrlichiosis Host-associated 1105 30.45 3.81 31.34 2.91 48.78 22.18
Mycobacterium leprae TN, complete genome Human Leprosy Host-associated 1605 59.70 3.21 59.95 2.93 34.26 12.69
Brucella suis 1330 chromosome II, complete sequence Human, Animal Brucellosis, infectious abortions, fever Host-associated 1148 56.92 4.54 58.12 2.95 40.89 17.63
Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence Vertebrate and invertebrate aquatic organisms Vibriosis Aquatic 2374 45.03 3.78 45.86 2.96 45.67 16.46
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence Plant Tumors Multiple 1851 59.48 3.31 59.79 2.96 38.47 16.15
Brucella abortus S19 chromosome 1, complete sequence Mammal Spontaneous abortion Multiple 1967 57.60 3.62 58.19 2.96 41.25 20.46
Brucella canis ATCC 23365 chromosome II, complete sequence Dog, Human Canine brucellosis 1149 57.04 4.25 58.07 2.97 40.22 16.71
Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete sequence Human Gastroenteritis Aquatic 3080 45.42 3.45 45.92 2.97 46.82 21.29
Ehrlichia ruminantium str. Welgevonden, complete genome Ruminant Heartwater Host-associated 958 30.17 3.39 30.49 2.98 44.74 19.12
Brucella suis ATCC 23445 chromosome II, complete sequence Human, Animal Brucellosis, infectious abortions, fever Host-associated 1320 57.10 4.24 58.16 2.98 40.66 16.81
Mycobacterium ulcerans Agy99, complete genome Human Buruli ulcer Host-associated 4160 65.34 3.10 65.49 2.98 37.59 14.56
Tropheryma whipplei str. Twist, complete genome Human Whipple's disease Host-associated 808 46.62 3.15 46.59 3.00 40.90 20.27
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome Fis Hitra disease Aquatic 2820 39.44 3.11 39.53 3.00 42.95 17.33
Staphylococcus aureus subsp. aureus N315, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2588 33.01 3.29 33.21 3.00 51.35 25.45
Staphylococcus aureus subsp. aureus JH1, complete genome Human, Animal Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2747 33.01 3.38 33.30 3.00 53.03 25.25
Lawsonia intracellularis PHE/MN1-00, complete genome Animal Proliferative enteropathy Host-associated 1180 34.48 3.07 34.50 3.01 40.33 17.35
Staphylococcus aureus RF122, complete genome Human, Animal Mastitis Host-associated 2509 33.03 3.30 33.23 3.01 49.18 22.48
Tropheryma whipplei TW08/27, complete genome Human Whipple's disease Host-associated 783 46.60 3.15 46.52 3.01 41.47 21.13
Staphylococcus aureus subsp. aureus JH9, complete genome Human, Animal Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2697 33.08 3.28 33.29 3.01 52.74 25.16
Helicobacter hepaticus ATCC 51449, complete genome Animal Hepatitis, typhlitis, hepatocellular tumors, and gastric bowel disease Host-associated 1875 35.80 3.58 36.22 3.02 43.54 20.49
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305, complete genome Human Urinary tract infections Host-associated 2446 33.45 3.29 33.78 3.02 45.85 20.43
Propionibacterium acnes KPA171202, complete genome Human Acne Host-associated 2297 60.05 3.20 60.22 3.03 38.19 15.57
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence Plant N/A Multiple 1876 59.32 3.51 59.73 3.04 38.83 16.25
Staphylococcus aureus subsp. aureus Mu50, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2697 33.03 3.33 33.24 3.04 52.33 25.53
Staphylococcus aureus subsp. aureus Mu3, complete genome Human Variety of infections Host-associated 2698 33.04 3.32 33.24 3.04 52.49 25.81
Staphylococcus epidermidis RP62A, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2494 32.10 3.66 32.73 3.04 50.66 24.84
Staphylococcus aureus subsp. aureus MSSA476, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2579 32.94 3.41 33.19 3.05 50.96 23.75
Staphylococcus aureus subsp. aureus MRSA252, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2656 32.95 3.41 33.19 3.05 51.72 24.46
Staphylococcus aureus subsp. aureus COL, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2615 32.84 3.60 33.17 3.07 51.00 24.65
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome Human Septicemia, pneumonia Host-associated 2657 32.63 3.73 33.14 3.07 51.90 23.75
Staphylococcus aureus subsp. aureus str. Newman, complete genome Human, Animal Skin infections, pneumonia, endocarditis 2614 33.06 3.31 33.21 3.07 51.40 24.52
Staphylococcus aureus subsp. aureus USA300, complete genome Human Septicemia, pneumonia Host-associated 2560 33.01 3.27 33.17 3.07 51.10 24.29
Brucella ovis ATCC 25840 chromosome I, complete sequence Sheep Inflammation of the epididymis and placenta Host-associated 1928 57.49 3.63 57.99 3.09 41.20 20.41
Orientia tsutsugamushi str. Ikeda, complete genome Human Scrub typhus Host-associated 1967 31.48 3.15 31.51 3.10 50.89 18.42
Staphylococcus aureus subsp. aureus MW2, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2632 32.85 3.41 33.13 3.10 51.62 24.34
Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2892 32.73 3.85 33.22 3.10 53.34 24.69
Bartonella henselae str. Houston-1, complete genome Human, Animal Bacillary angiomatosis, Cat scratch fever Host-associated 1488 39.55 3.26 39.69 3.11 45.26 23.36
Leptospira interrogans serovar Lai str. 56601 chromosome II, complete sequence Animal Leptospirosis Host-associated 367 35.09 4.66 36.53 3.11 47.88 21.86
Phenylobacterium zucineum HLK1, complete genome Human Host-associated 3529 71.49 3.26 71.62 3.12 42.24 15.59
Legionella pneumophila str. Lens, complete genome Animal Legionnaire's disease Host-associated 2878 38.75 3.24 38.80 3.12 39.28 15.76
Legionella pneumophila str. Paris, complete genome Animal Legionnaire's disease Host-associated 3027 38.73 3.23 38.81 3.12 39.72 15.05
Brucella canis ATCC 23365 chromosome I, complete sequence Dog, Human Canine brucellosis 2102 57.15 4.17 58.09 3.13 42.66 21.33
Acinetobacter baumannii, complete genome Human Nosocomial infections, nosocomial pneumonia Aquatic 2913 39.74 3.25 39.83 3.13 0.00 0.00
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome Human, Animals Bacteremia, Pneumonia Multiple 1911 32.71 3.22 32.81 3.14 41.86 15.68
Mycoplasma gallisepticum R, complete genome Avian Chronic respiratory diseases Host-associated 726 31.67 3.23 31.65 3.15 52.74 22.11
Legionella pneumophila str. Corby, complete genome Human Legionnaire's disease Host-associated 3206 38.58 3.46 38.80 3.16 41.07 15.40
Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome Human Food poisoning Terrestrial 3833 35.91 3.35 36.13 3.17 49.38 22.22
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Animal Legionnaire's disease Host-associated 2942 38.69 3.32 38.72 3.19 39.43 14.97
Mycoplasma arthritidis 158L3-1, complete genome Rodent Acute rat polyarthritis and murine chronic proliferative arthritis Host-associated 631 31.28 3.34 31.30 3.20 49.04 24.90
Bacillus anthracis str. 'Ames Ancestor', complete genome Animal Anthrax Terrestrial 5309 35.42 3.63 35.77 3.20 50.80 20.18
Francisella tularensis subsp. holarctica FTNF002-00, complete genome Human, Animal Tularemia Multiple 1580 32.53 3.43 32.72 3.20 42.80 15.32
Bacillus anthracis str. Ames, complete genome Animal Anthrax Multiple 5311 35.42 3.63 35.77 3.20 50.80 20.18
Bacillus anthracis str. Sterne, complete genome Animal Anthrax Multiple 5287 35.52 3.39 35.73 3.21 49.98 19.68
Brucella suis 1330 chromosome I, complete sequence Human, Animal Brucellosis, infectious abortions, fever Host-associated 2123 57.00 4.33 58.08 3.21 43.27 21.98
Brucella melitensis biovar Abortus 2308 chromosome I, complete sequence Human, cattle Brucellosis Host-associated 2000 57.25 4.06 58.07 3.21 42.36 20.83
Bartonella bacilliformis KC583, complete genome Human Carrion's disease, Oroya fever Host-associated 1283 39.00 4.11 39.41 3.21 45.64 21.76
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II, complete sequence Animal Leptospirosis Host-associated 264 36.46 3.21 36.43 3.21 42.63 17.29
Staphylococcus haemolyticus JCSC1435, complete genome Human Wide range of opportunistic infections Host-associated 2676 32.76 3.62 33.11 3.21 52.32 24.77
Vibrio vulnificus CMCP6 chromosome II, complete sequence Human Gastroenteritis, wound infections, primary septicemia Aquatic 1557 47.71 3.40 47.96 3.22 42.13 19.71
Brucella suis ATCC 23445 chromosome I, complete sequence Human, Animal Brucellosis, infectious abortions, fever Host-associated 1921 57.01 4.26 57.98 3.22 43.38 21.71
Mycobacterium marinum M, complete genome Fish, Human Tuberculosis-like infection in fish, Skin infection, arthritis in human Multiple 5423 65.55 3.32 65.72 3.22 43.69 21.36
Helicobacter acinonychis str. Sheeba, complete genome Feline Gastric lesions Host-associated 1612 38.39 3.61 38.57 3.22 47.06 22.65
Bacillus cereus E33L, complete genome Human, Animal Food poisoning Terrestrial 5134 35.50 3.43 35.70 3.22 49.80 20.52
Listeria monocytogenes EGD-e, complete genome Human Listeriosis Multiple 2846 38.00 3.37 38.12 3.23 45.37 20.61
Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence Human Opportunistic infections Terrestrial 2731 56.62 3.41 56.84 3.23 42.09 20.14
Lysinibacillus sphaericus C3-41, complete genome Mosquito Larvicidal toxin Specialized 4584 37.44 3.73 37.92 3.24 0.00 0.00
Bacillus thuringiensis str. Al Hakam, complete genome Insect Sotto disease Multiple 4736 35.66 3.36 35.75 3.24 48.78 20.76
Staphylococcus epidermidis ATCC 12228, complete genome Human Toxic-shock syndrome and staphylococcal scarlet fever Host-associated 2419 32.28 3.83 32.77 3.24 48.12 21.72
Listeria monocytogenes str. 4b F2365, complete genome Human Listeriosis Multiple 2821 37.91 3.60 38.22 3.25 45.56 20.39
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Human, Cattle Brucellosis Host-associated 2030 57.12 4.21 58.04 3.25 42.56 21.04
Vibrio vulnificus CMCP6 chromosome I, complete genome Human Gastroenteritis, wound infections, primary septicemia Aquatic 2915 46.93 3.43 47.14 3.25 46.27 22.38
Thermobifida fusca YX, complete genome Human Mushroom worker's disease, farmer's lung disease Multiple 3110 67.65 3.42 67.86 3.26 44.02 17.71
Francisella tularensis subsp. holarctica OSU18, complete genome Human, Animal Tularemia Multiple 1555 32.50 3.56 32.76 3.26 43.59 15.71
Bacillus weihenstephanensis KBAB4, complete genome Human Food poisoning Terrestrial 5155 35.66 3.54 35.86 3.27 49.81 20.36
Helicobacter pylori HPAG1, complete genome Human Gastric ulcer Host-associated 1536 39.24 3.61 39.57 3.27 43.39 19.29
Francisella tularensis subsp. tularensis WY96-3418, complete genome Mammal Tularemia Host-associated 1634 32.58 3.43 32.76 3.27 43.50 15.98
Rickettsia prowazekii str. Madrid E, complete genome Human Louse-borne typhus, Mediterranean spotted fever, epidemic typhus Host-associated 835 30.02 3.38 30.15 3.28 40.33 17.42
Francisella tularensis subsp. tularensis Schu 4, complete genome Human, Animal Tularemia Aquatic 1603 32.63 3.37 32.72 3.28 43.55 15.98
Francisella tularensis subsp. tularensis FSC198, complete genome Human, Animal Tularemia Aquatic 1605 32.63 3.37 32.72 3.28 43.56 16.01
Francisella tularensis subsp. mediasiatica FSC147, complete genome Human, Animal Tularemia Host-associated 1406 32.84 3.41 32.94 3.29 43.09 15.51
Clostridium perfringens str. 13, complete genome Human, Animal Gas gangrene Multiple 2660 29.13 3.46 29.18 3.29 53.39 22.68
Mycoplasma penetrans HF-2, complete genome Human Urogenital or respiratory tract infections Host-associated 1037 26.11 3.47 26.12 3.29 50.93 21.74
Bacillus cereus ATCC 14579, complete genome Human Food poisoning Terrestrial 5234 35.40 3.53 35.61 3.29 52.15 22.37
Mycobacterium tuberculosis CDC1551, complete genome Human Tuberculosis Host-associated 4189 65.22 3.49 65.48 3.29 42.54 20.68
Brucella melitensis 16M chromosome I, complete sequence Human, Animal Brucellosis Host-associated 2059 57.58 3.72 58.02 3.30 42.68 22.35
Francisella tularensis subsp. holarctica, complete genome Human, Animal Tularemia Host-associated 1754 32.49 3.39 32.57 3.30 43.62 15.35
Xanthomonas oryzae pv. oryzae KACC10331, complete genome Rice Rice bacterial blight disease Host-associated 4144 63.81 3.50 64.01 3.30 45.53 17.93
Nocardia farcinica IFM 10152, complete genome Human, Animal Nocardiosis Multiple 5683 70.70 3.45 70.92 3.30 42.28 15.63
Mycobacterium tuberculosis H37Ra, complete genome Human Tuberculosis (attenuated) Host-associated 4034 65.43 3.37 65.56 3.30 41.98 19.71
Haemophilus somnus 129PT, complete genome Human, Animal Pneumonia, arthritis, myocarditis, and reproductive problems Host-associated 1792 37.21 3.48 37.36 3.30 43.88 19.96
Helicobacter pylori J99, complete genome Human Gastric inflammation and peptic ulcer disease Host-associated 1489 39.55 3.47 39.73 3.31 44.08 20.61
Streptococcus agalactiae 2603V/R, complete genome Human Septicemia, pneumonia, and meningitis Host-associated 2124 35.44 3.78 35.81 3.31 47.62 23.19
Pasteurella multocida subsp. multocida str. Pm70, complete genome Human, Animal Pasteurellosis Host-associated 2015 40.66 3.39 40.77 3.31 41.63 21.50
Haemophilus influenzae 86-028NP, complete genome Human Meningitis, speticemia, otitis media, sinusitis, chronic bronchitis Host-associated 1792 38.35 3.58 38.49 3.32 46.12 20.52
Mycobacterium tuberculosis H37Rv, complete genome Human Tuberculosis Host-associated 3989 65.47 3.39 65.58 3.32 42.21 20.12
Xanthomonas oryzae pv. oryzae PXO99A, complete genome Rice Rice bacterial blight disease Host-associated 4988 63.70 3.77 64.16 3.32 49.05 20.40
Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome Bovine Bovine tuberculosis Host-associated 3952 65.45 3.42 65.57 3.33 41.90 20.26
Aliivibrio salmonicida LFI1238 chromosome 2, complete genome Fis Hitra disease Aquatic 984 38.48 3.51 38.70 3.33 41.50 15.67
Mycobacterium bovis AF2122/97, complete genome Human, Animal Tuberculosis in cattle Host-associated 3920 65.47 3.40 65.58 3.33 42.09 20.20
Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete sequence Human Gastroenteritis Aquatic 1752 45.47 3.83 46.08 3.33 43.85 20.13
Vibrio vulnificus YJ016 chromosome II, complete sequence Human Gastroenteritis, wound infections, primary septicemia Aquatic 1696 47.10 4.03 47.74 3.34 41.09 15.90
Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Insect Sotto disease Multiple 5117 35.52 3.51 35.69 3.34 50.14 21.41
Clostridium perfringens ATCC 13124, complete genome Human, Animal Gas gangrene Multiple 2876 28.97 3.58 29.10 3.34 53.64 22.16
Mycobacterium tuberculosis F11, complete genome Human Tuberculosis Host-associated 3941 65.47 3.40 65.57 3.35 41.86 20.33
Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence Human Opportunistic infections Terrestrial 1693 56.82 3.57 56.92 3.36 40.99 19.51
Clostridium botulinum E3 str. Alaska E43, complete genome Human Botulism Multiple 3256 27.92 3.61 28.05 3.36 49.51 19.49
Bacillus cereus ATCC 10987, complete genome Human Food poisoning Terrestrial 5603 35.34 4.00 35.86 3.37 52.15 21.32
Mycobacterium avium subsp. paratuberculosis K-10, complete genome Mammal Paratuberculosis Multiple 4350 69.39 3.47 69.49 3.37 39.84 13.96
Haemophilus influenzae Rd KW20, complete genome Human Meningitis, speticemia, otitis media, sinusitis, chronic bronchitis Host-associated 1657 38.46 3.50 38.52 3.38 44.22 20.10
Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1, complete sequence Cattle, Human Leptospirosis Host-associated 2645 40.86 3.40 40.89 3.38 43.27 19.77
Arcobacter butzleri RM4018, complete genome Human Gastroenteritis and bacteremia Multiple 2259 26.98 3.50 27.01 3.38 46.42 17.44
Bordetella avium 197N, complete genome Animal Bordetellosis Host-associated 3381 61.72 3.65 61.95 3.39 42.44 17.49
Streptococcus agalactiae A909, complete genome Human Septicemia, pneumonia, and meningitis Host-associated 1996 35.66 3.56 35.81 3.39 46.42 22.40
Helicobacter pylori 26695, complete genome Human Gastric inflammation and peptic ulcer disease Host-associated 1576 39.13 3.75 39.39 3.40 45.51 21.19
Streptococcus agalactiae NEM316, complete genome Human Neonatal GBS meningitis Host-associated 2094 35.67 3.51 35.72 3.40 46.90 22.39
Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence Human Necrotizing pneumonia, chronic infections 1040 67.02 3.58 67.23 3.40 46.59 17.71
Helicobacter pylori Shi470, complete genome Human Gastric ulcer Host-associated 1569 38.76 4.11 39.39 3.41 45.88 24.34
Haemophilus influenzae PittEE, complete genome Human Meningitis, septicemia, otitis media, sinusitis, chronic bronchitis Host-associated 1619 38.10 3.91 38.40 3.41 45.49 21.22
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence Cattle, Human Leptospirosis Host-associated 2703 40.88 3.43 40.91 3.41 43.54 20.12
Clostridium perfringens SM101, complete genome Human, Animal Gas gangrene Multiple 2558 28.85 3.57 28.92 3.41 53.70 22.80
Burkholderia sp. 383 chromosome 2, complete sequence Human Necrotizing pneumonia and chronic infections Multiple 3174 66.93 3.60 67.12 3.42 44.47 18.12
Helicobacter pylori P12, complete genome Human Gastric inflammation and peptic ulcer disease Host-associated 1567 39.03 3.70 39.33 3.42 46.53 22.91
Rickettsia typhi str. Wilmington, complete genome Human, Rodent Endemic typhus and murine typhus Host-associated 838 29.88 3.61 30.16 3.42 39.71 16.63
Stenotrophomonas maltophilia K279a, complete genome Human Blood, respiratory, and urinary infections Multiple 4386 66.37 3.55 66.55 3.43 50.41 22.77
Acinetobacter baumannii ATCC 17978, complete genome Human Nosocomial infections, nosocomial pneumonia Multiple 3352 40.16 3.49 40.17 3.43 49.04 19.71
Haemophilus influenzae PittGG, complete genome Human Meningitis, septicemia, otitis media, sinusitis, chronic bronchitis Host-associated 1667 38.07 3.85 38.35 3.43 46.84 20.91
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence Animal Leptospirosis Host-associated 3394 36.17 3.74 36.47 3.44 46.38 19.41
Borrelia hermsii DAH, complete genome Human Tick-borne relapsing fever Host-associated 819 29.91 3.52 29.92 3.44 42.25 15.95
Campylobacter fetus subsp. fetus 82-40, complete genome Human, Animal Infertility, infectious abortions, septicemia, meningitis Host-associated 1719 33.55 3.71 33.69 3.44 47.36 17.63
Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Human, Animal Periodontal diseases and some inflammations Host-associated 2067 26.96 3.77 27.13 3.46 47.17 18.21
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence Animal Leptospirosis Host-associated 4360 35.02 4.84 36.42 3.47 50.73 21.26
Borrelia turicatae 91E135, complete genome Human Tick-borne relapsing fever Host-associated 818 29.24 3.53 29.23 3.47 42.75 16.38
Mycoplasma mobile 163K, complete genome Fish None Host-associated 633 25.29 3.59 25.21 3.48 45.05 16.32
Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome Human Food poisoning Multiple 1634 30.55 3.69 30.62 3.49 47.14 19.28
Mycoplasma genitalium G37, complete genome Human, Animal, Insect Urogenital or respiratory tract infections Host-associated 477 31.58 3.61 31.43 3.49 47.70 18.74
Streptococcus pyogenes str. Manfredo, complete genome Human Wide range of infections Host-associated 1745 38.65 3.69 38.95 3.50 48.83 22.89
Mycobacterium avium 104, complete genome Mammal Tuberculosis type pulmonary infections Host-associated 5120 68.90 3.75 69.19 3.50 42.33 16.30
Campylobacter jejuni subsp. jejuni 81-176, complete genome Human Food poisoning Multiple 1653 30.58 3.77 30.73 3.52 46.63 18.51
Rickettsia canadensis str. McKiel, complete genome Human Epidemic typhus Host-associated 1093 31.03 4.11 31.52 3.53 47.82 23.58
Streptococcus pyogenes MGAS10394, complete genome Human Wide range of infections Host-associated 1886 38.65 3.80 38.99 3.53 49.11 22.38
Streptococcus pyogenes SSI-1, complete genome Human Wide range of infections Host-associated 1861 38.53 3.74 38.84 3.53 50.20 23.03
Streptococcus pyogenes MGAS5005, complete genome Human Wide range of infections Host-associated 1865 38.53 3.79 38.84 3.53 49.71 23.84
Campylobacter jejuni subsp. jejuni 81116, complete genome Human Food poisoning Multiple 1626 30.51 3.72 30.62 3.54 46.46 18.10
Streptococcus pyogenes MGAS9429, complete genome Human Wide range of infections Host-associated 1877 38.31 3.95 38.80 3.54 49.56 22.84
Haemophilus ducreyi 35000HP, complete genome Human Genital ulcer disease Host-associated 1717 38.08 4.33 38.64 3.54 48.61 24.39
Borrelia burgdorferi B31, complete genome Human Lyme disease Host-associated 851 28.42 3.85 28.67 3.55 45.21 16.77
Vibrio cholerae O395 chromosome 2, complete sequence Human, Primate Cholera Aquatic 2742 47.83 3.88 48.22 3.55 44.38 20.06
Streptococcus pyogenes MGAS315, complete genome Human Wide range of infections Host-associated 1865 38.60 3.72 38.85 3.56 50.19 22.73
Streptococcus pyogenes MGAS8232, complete genome Human Wide range of infections Host-associated 1839 38.53 3.79 38.85 3.56 49.34 22.87
Streptococcus pyogenes M1 GAS, complete genome Human Wide range of infections Host-associated 1697 38.64 3.66 38.86 3.56 47.38 21.85
Borrelia recurrentis A1, complete genome Human Louse-borne relapsing fever Host-associated 800 27.65 3.61 27.61 3.57 45.76 17.35
Borrelia duttonii Ly, complete genome Human Tick-borne relapsing fever Host-associated 820 27.76 3.62 27.72 3.58 45.87 17.42
Pseudomonas syringae pv. phaseolicola 1448A, complete genome Plant Plant rot Multiple 4984 58.31 3.76 58.57 3.58 39.91 15.91
Campylobacter jejuni RM1221, complete genome Human Food poisoning Multiple 1838 30.10 3.94 30.42 3.58 48.61 20.90
Clostridium tetani E88, complete genome Human Tetanus Multiple 2373 28.95 3.58 28.95 3.58 51.65 21.12
Borrelia afzelii PKo, complete genome Human Acrodermatitis chronica atrophicans Host-associated 855 28.07 3.95 28.35 3.59 45.20 16.08
Streptococcus pyogenes NZ131, complete genome Human Wide range of infections Host-associated 1700 38.61 3.77 38.88 3.59 48.64 22.96
Actinobacillus pleuropneumoniae L20, complete genome Porcine Fibrinous and necrotizing pleuropneumonia Host-associated 2012 41.85 3.64 42.00 3.60 50.01 24.39
Borrelia garinii PBi chromosome linear, complete sequence Human Lyme disease Host-associated 832 28.23 3.90 28.42 3.60 45.24 16.14
Haemophilus somnus 2336, complete genome Human, Animal Pneumonia, arthritis, myocarditis, and reproductive problems Host-associated 1980 37.49 3.76 37.54 3.60 0.00 0.00
Leifsonia xyli subsp. xyli str. CTCB07, complete genome Plant Ratoon stunting disease Host-associated 2030 67.97 3.84 68.24 3.60 42.42 19.98
Campylobacter jejuni subsp. doylei 269.97, complete genome Human Bacteremia Multiple 1731 30.44 3.88 30.79 3.60 49.23 19.44
Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome Cattle Contagious bovine pleuropneumonia (CBPP) Host-associated 1016 23.80 3.70 23.87 3.60 48.28 18.65
Shewanella putrefaciens CN-32, complete genome Human Soft tissue infections Multiple 3972 44.78 3.68 44.94 3.60 41.85 17.18
Streptococcus mutans UA159, complete genome Human Dental caries Host-associated 1960 37.10 3.90 37.30 3.61 44.01 19.24
Shewanella oneidensis MR-1, complete genome Human Rare opportunistic pathogen of humans Multiple 4318 46.33 3.81 46.58 3.62 42.26 18.14
Shigella dysenteriae Sd197, complete genome Human Dysentery Host-associated 4271 51.49 3.86 51.93 3.62 41.96 16.30
Shewanella sp. W3-18-1, complete genome Human Soft tissue infections Multiple 4044 45.00 3.71 45.16 3.62 43.07 18.09
Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete genome Porcine Fibrinous and necrotizing pleuropneumonia Host-associated 2131 41.72 3.73 41.90 3.64 52.78 25.94
Rickettsia akari str. Hartford, complete genome Human Rickettsialpox Host-associated 1259 31.80 4.23 32.44 3.65 49.83 23.16
Finegoldia magna ATCC 29328, complete genome Human Multiple 1631 32.18 3.66 32.25 3.65 0.00 0.00
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence Human, Primate Cholera Aquatic 2742 47.43 4.26 48.09 3.65 44.80 20.59
Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome Rice Rice bacterial blight disease Host-associated 4372 63.74 3.69 63.85 3.65 46.23 18.06
Bordetella pertussis Tohama I, complete genome Human Respiratory deseases Host-associated 3436 67.71 3.90 67.94 3.67 44.11 17.20
Rickettsia rickettsii str. Iowa, complete genome Human Rocky Mountain Spotted Fever Host-associated 1384 31.95 4.51 32.49 3.68 51.12 22.78
Rickettsia rickettsii str. 'Sheila Smith', complete genome Human Rocky Mountain Spotted Fever Host-associated 1345 32.02 4.40 32.50 3.69 50.49 22.60
Acinetobacter baumannii ACICU, complete genome Human Nosocomial infections, nosocomial pneumonia Aquatic 3667 39.53 4.01 39.77 3.69 48.97 22.50
Streptococcus pyogenes MGAS2096, complete genome Human Wide range of infections Host-associated 1898 38.64 4.01 39.02 3.69 48.99 22.30
Streptococcus pyogenes MGAS10270, complete genome Human Wide range of infections Host-associated 1986 38.31 3.96 38.66 3.70 51.00 23.02
Burkholderia mallei SAVP1 chromosome II, complete sequence Human, Animal Glanders and pneumonia Host-associated 1734 68.39 5.20 68.97 3.70 54.60 23.43
Flavobacterium psychrophilum JIP02/86, complete genome Salmonid fish Cold water disease, rainbow trout fry syndrome Aquatic 2412 32.65 3.83 32.86 3.70 49.89 21.58
Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome Plant Bacterial spot Host-associated 4487 64.66 3.90 64.93 3.71 50.08 21.35
Vibrio vulnificus YJ016 chromosome I, complete sequence Human Gastroenteritis, wound infections, primary septicemia Aquatic 3259 46.28 4.03 46.75 3.71 47.83 22.24
Dichelobacter nodosus VCS1703A, complete genome Animal Ovine footrot Host-associated 1280 44.37 4.11 44.69 3.71 54.20 35.19
Burkholderia xenovorans LB400 chromosome 2, complete genome Human, Plants Opportunistic infections Multiple 2960 62.84 4.09 63.14 3.71 44.07 18.83
Clostridium botulinum A str. ATCC 3502, complete genome Human Botulism Multiple 3572 28.87 3.98 29.03 3.71 57.68 22.97
Clostridium botulinum F str. Langeland, complete genome Human Botulism Multiple 3635 28.87 4.01 29.06 3.72 57.85 23.18
Ureaplasma urealyticum serovar 10 str. ATCC 33699, complete genome Human Urogenital or respiratory tracts infections Host-associated 646 26.29 3.81 26.26 3.72 52.05 22.60
Clostridium botulinum A str. ATCC 19397, complete genome Human Botulism Multiple 3552 28.83 4.03 29.01 3.72 57.54 22.62
Clostridium botulinum A str. Hall, complete genome Human Botulism Multiple 3404 28.84 4.00 29.01 3.73 57.42 22.72
Clostridium botulinum A3 str. Loch Maree, complete genome Human Botulism Multiple 3655 28.91 4.01 29.07 3.74 0.00 0.00
Mesoplasma florum L1, complete genome Mammal, Insect, Plant Host-associated 682 26.81 3.79 26.74 3.74 44.35 18.30
Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome Animal Urogenital or respiratory tracts infections Host-associated 614 25.85 3.84 25.78 3.76 50.61 22.06
Streptococcus pyogenes MGAS10750, complete genome Human Wide range of infections Host-associated 1979 38.26 4.07 38.62 3.76 51.60 25.48
Streptococcus pyogenes MGAS6180, complete genome Human Wide range of infections Host-associated 1894 38.26 3.98 38.59 3.77 50.51 24.05
Clostridium botulinum B1 str. Okra, complete genome Human Botulism Multiple 3657 28.93 4.02 29.10 3.77 0.00 0.00
Streptococcus equi subsp. zooepidemicus MGCS10565, complete genome Animals, Human Opportunistic infections Host-associated 1893 41.87 4.13 42.31 3.77 47.14 23.37
Ureaplasma parvum serovar 3 str. ATCC 27815, complete genome Human, Animal Urogenital or respiratory tracts infections Host-associated 609 25.81 3.92 25.79 3.78 0.00 0.00
Rickettsia conorii str. Malish 7, complete genome Human Rocky Mountain Spotted Fever Host-associated 1374 32.03 4.13 32.38 3.78 49.03 21.33
Xanthomonas axonopodis pv. citri str. 306, complete genome Plant Citrus canker Host-associated 4312 64.79 3.85 64.92 3.79 49.88 22.39
Candidatus Phytoplasma australiense, complete genome Grapevines Host-associated 684 28.23 4.24 28.52 3.79 62.76 25.09
Rickettsia felis URRWXCal2, complete genome Human, Feline Spotted-fever like illness Host-associated 1400 32.00 3.85 32.19 3.79 49.49 21.08
Pseudomonas aeruginosa PAO1, complete genome Human Opportunistic infections Multiple 5566 66.74 3.97 66.95 3.79 42.31 16.39
Burkholderia mallei NCTC 10229 chromosome II, complete sequence Human, Animal Glanders and pneumonia Host-associated 2177 68.51 5.10 69.02 3.80 52.84 21.98
Burkholderia mallei NCTC 10247 chromosome II, complete sequence Human, Animal Glanders and pneumonia Host-associated 2376 68.50 5.12 69.08 3.80 54.31 22.96
Actinobacillus pleuropneumoniae serovar 3 str. JL03, complete genome Porcine Fibrinous and necrotizing pleuropneumonia Host-associated 2036 41.53 4.09 41.86 3.80 50.61 25.40
Bartonella tribocorum CIP 105476, complete genome Rat Bartinellosis Host-associated 2074 40.29 4.00 40.43 3.81 49.42 23.74
Acinetobacter sp. ADP1, complete genome Human Nosocomial infections in immunocompromised individuals Multiple 3325 40.81 4.14 41.15 3.82 44.46 22.97
Mycoplasma pulmonis UAB CTIP, complete genome Rodent Respiratory mycoplasmosis Host-associated 782 27.05 4.11 27.14 3.82 46.64 19.74
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome Tomato Tomato bacterial wilt and canker Multiple 2984 72.78 3.94 72.95 3.83 50.18 23.50
Corynebacterium urealyticum DSM 7109, complete genome Human Urinary tract infection Host-associated 2024 64.31 4.04 64.57 3.85 0.00 0.00
Corynebacterium jeikeium K411, complete genome Human Nocosomial infections Multiple 2104 61.70 3.98 61.92 3.86 40.47 17.04
Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Human, Animal Glanders and pneumonia Host-associated 2995 67.65 4.60 68.18 3.87 49.36 19.37
Shigella boydii CDC 3083-94, complete genome Human Dysentery Host-associated 4246 51.32 4.53 52.04 3.87 43.32 17.52
Bordetella parapertussis 12822, complete genome Human, Sheep Respiratory deseases Host-associated 4185 68.05 4.08 68.26 3.89 45.63 18.29
Clavibacter michiganensis subsp. sepedonicus, complete genome Plant Wilt and Tuber Rot, Ring Rot Multiple 2941 72.30 4.16 72.53 3.92 49.30 21.92
Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Human, Animal Glanders and pneumonia Host-associated 2029 68.05 5.07 68.81 3.92 52.06 22.19
Shigella flexneri 2a str. 2457T, complete genome Human Dysentery Host-associated 4061 51.60 4.04 51.82 3.92 43.60 18.60
Burkholderia mallei NCTC 10229 chromosome I, complete sequence Human, Animal Glanders and pneumonia Host-associated 3333 67.88 4.75 68.26 3.93 50.93 19.72
Pseudomonas syringae pv. tomato str. DC3000, complete genome Plant Plant rot Multiple 5475 58.61 4.14 58.96 3.93 42.38 16.45
Enterococcus faecalis V583, complete genome Human Bacteremia, endocarditis, urinary tract infection Multiple 3113 37.28 4.35 37.73 3.94 49.60 24.09
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Ruminant Severe arthritis and septicemia Host-associated 812 24.05 4.02 23.98 3.95 50.42 25.72
Clostridium difficile 630, complete genome Human Antibiotic-associated diarrhea and pseudomembraneous colitis Multiple 3742 29.91 4.23 29.83 3.95 53.45 25.42
Burkholderia mallei SAVP1 chromosome I, complete sequence Human, Animal Glanders and pneumonia Host-associated 3455 67.79 4.90 68.25 3.95 51.88 20.32
Burkholderia multivorans ATCC 17616 chromosome 2, complete sequence Human Cepacia syndrome Host-associated 2152 67.07 4.14 67.33 3.95 52.65 29.26
Burkholderia mallei NCTC 10247 chromosome I, complete sequence Human, Animal Glanders and pneumonia Host-associated 3476 67.82 4.82 68.29 3.95 52.05 20.97
Shigella boydii Sb227, complete genome Human Dysentery Host-associated 4134 51.65 4.17 52.02 3.96 43.10 17.12
Candidatus Phytoplasma mali, complete genome Plant Apple proliferation disease Host-associated 479 22.46 4.02 22.51 3.97 62.15 26.10
Burkholderia multivorans ATCC 17616 chromosome 2, complete sequence Human Cepacia syndrome Host-associated 2130 67.12 4.16 67.38 3.97 53.44 31.27
Shigella sonnei Ss046, complete genome Human Dysentery Host-associated 4219 51.65 4.20 51.93 3.99 42.45 16.71
Xanthomonas campestris pv. campestris str. ATCC 33913, complete genome Plant Black rot Host-associated 4181 65.33 4.08 65.50 4.01 49.78 21.25
Burkholderia cenocepacia J2315 chromosome 2, complete genome Human Necrotizing pneumonia and chronic infections Multiple 2807 67.38 4.20 67.60 4.02 48.26 23.47
Bordetella bronchiseptica RB50, complete genome Animal Respiratory diseases Host-associated 4994 68.04 4.23 68.29 4.02 47.61 19.49
Burkholderia ambifaria MC40-6 chromosome 1, complete sequence Human Cepacia syndrome Multiple 3074 66.98 4.33 67.28 4.03 0.00 0.00
Burkholderia xenovorans LB400 chromosome 3, complete genome Human, Plants Opportunistic infections Multiple 1312 61.84 4.19 62.07 4.03 52.64 19.26
Pseudomonas entomophila L48, complete genome Insect Cellular destruction Multiple 5134 64.12 4.52 64.56 4.03 45.69 20.56
Pseudomonas syringae pv. syringae B728a, complete genome Plant Plant rot Multiple 5089 59.35 4.19 59.59 4.04 41.93 17.52
Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence Human Necrotizing pneumonia, chronic infections 2472 66.90 4.25 67.18 4.05 47.70 21.57
Mycoplasma hyopneumoniae 232, complete genome Swine Swine mycoplasmosis Host-associated 691 29.13 4.26 29.27 4.05 46.37 19.00
Shigella flexneri 5 str. 8401, complete genome Human Dysentery Host-associated 4115 51.34 4.18 51.63 4.05 42.69 17.26
Mycoplasma hyopneumoniae J, complete genome Swine Enzootic pneumonia Host-associated 665 29.24 4.17 29.25 4.05 46.22 20.24
Pseudomonas mendocina ymp, complete genome Human Spondylodiscitis (rare) Multiple 4594 64.78 4.15 65.01 4.05 47.90 20.42
Coxiella burnetii RSA 331, complete genome Animal, Human Q fever Multiple 1930 43.03 4.81 43.26 4.06 46.19 20.74
Coxiella burnetii Dugway 5J108-111, complete genome Animal, Human Q-fever Host-associated 1993 42.75 4.96 42.83 4.06 46.01 18.51
Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence Human Necrotizing pneumonia, chronic infections Multiple 3160 66.92 4.25 67.19 4.06 0.00 0.00
Mycoplasma hyopneumoniae 7448, complete genome Swine Enzootic pneumonia Host-associated 663 29.19 4.17 29.17 4.07 44.84 17.10
Burkholderia ambifaria MC40-6 chromosome 2, complete sequence Human Cepacia syndrome Multiple 2382 66.73 4.30 67.03 4.07 0.00 0.00
Burkholderia pseudomallei 1710b chromosome I, complete sequence Animal Melioidosis Terrestrial 3736 67.98 4.40 68.14 4.09 52.74 24.14
Burkholderia cenocepacia J2315 chromosome 3, complete genome Human Necrotizing pneumonia and chronic infections Multiple 752 66.83 4.26 67.10 4.09 50.23 22.08
Burkholderia pseudomallei 1710b chromosome II, complete sequence Animal Melioidosis Terrestrial 2611 68.61 4.48 68.77 4.09 53.37 25.59
Pseudomonas aeruginosa UCBPP-PA14, complete genome Human, Animal, Plant Opportunistic infections Multiple 5892 66.46 4.33 66.73 4.12 43.68 17.32
Burkholderia ambifaria MC40-6 chromosome 3, complete sequence Human Cepacia syndrome Multiple 967 65.87 4.32 66.21 4.12 0.00 0.00
Shigella flexneri 2a str. 301, complete genome Human Dysentery Host-associated 4177 51.36 4.22 51.56 4.13 43.53 18.45
Burkholderia sp. 383 chromosome 3, complete sequence Human Necrotizing pneumonia and chronic infections Multiple 1209 65.56 4.25 65.76 4.13 52.18 20.28
Granulibacter bethesdensis CGDNIH1, complete genome Human Chronic granulomatous disease Multiple 2437 59.37 4.89 59.71 4.13 42.35 20.72
Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Human Necrotizing pneumonia, chronic infections 2965 67.04 4.34 67.31 4.14 48.04 20.47
Burkholderia xenovorans LB400 chromosome 1, complete sequence Human, Plants Opportunistic infections Multiple 4430 62.69 4.41 63.05 4.14 49.34 23.52
Bacillus licheniformis ATCC 14580, complete genome Human Food poisoning Terrestrial 4178 46.10 4.62 46.71 4.16 45.11 23.14
Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence Human Necrotizing pneumonia, chronic infections Multiple 1053 66.44 4.30 66.60 4.17 0.00 0.00
Burkholderia pseudomallei 1106a chromosome I, complete sequence Animal Melioidosis Terrestrial 4019 67.62 5.36 68.15 4.18 54.05 24.20
Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence Human Necrotizing pneumonia, chronic infections Multiple 2795 66.84 4.32 67.06 4.19 0.00 0.00
Bacillus licheniformis ATCC 14580, complete genome Human Food poisoning Terrestrial 4196 46.17 4.53 46.66 4.19 44.78 22.94
Xanthomonas campestris pv. campestris str. 8004, complete genome Plant Black rot and citrus canker Host-associated 4273 65.18 4.26 65.36 4.19 50.84 22.34
Yersinia pestis Angola, complete genome Human, Rodent Bubonic plague Multiple 3832 47.59 5.21 48.49 4.20 41.32 17.38
Pseudomonas aeruginosa PA7, complete genome Human Opportunistic infections Multiple 6286 66.39 5.05 67.07 4.20 45.43 17.62
Acinetobacter baumannii AYE, complete genome Human Nosocomial infections, nosocomial pneumonia Aquatic 3607 39.84 4.51 39.94 4.20 0.00 0.00
Treponema pallidum subsp. pallidum str. Nichols, complete genome Human Syphilis Host-associated 1036 52.88 4.31 52.86 4.22 44.12 16.79
Burkholderia sp. 383 chromosome 1, complete sequence Human Necrotizing pneumonia and chronic infections Multiple 3334 66.36 4.37 66.57 4.23 47.31 20.76
Coxiella burnetii RSA 493, complete genome Animal, Human Q fever Multiple 2016 42.64 5.06 42.80 4.23 47.40 20.65
Ralstonia solanacearum GMI1000, complete genome Plant Plant rot Multiple 3440 66.98 4.55 67.29 4.23 48.54 19.49
Burkholderia pseudomallei 668 chromosome II, complete sequence Animal Melioidosis Terrestrial 3279 67.81 6.02 68.66 4.24 57.63 26.54
Burkholderia pseudomallei 1106a chromosome II, complete sequence Animal Melioidosis Terrestrial 3164 67.97 6.10 68.78 4.24 57.22 26.44
Streptococcus pneumoniae G54, complete genome Human Pneumonia Host-associated 2115 39.82 4.59 40.39 4.26 50.63 22.83
Treponema pallidum subsp. pallidum SS14, complete genome Human Syphilis Host-associated 1028 52.88 4.36 52.82 4.26 43.89 16.78
Burkholderia pseudomallei 668 chromosome I, complete sequence Animal Melioidosis Terrestrial 3951 67.59 5.52 68.20 4.28 53.87 24.06
Vibrio cholerae O395 chromosome 1, complete sequence Human, Primate Cholera Aquatic 1133 46.24 4.66 47.01 4.29 47.49 23.56
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence Human, Primate Cholera Aquatic 1093 45.97 4.79 46.88 4.29 46.07 20.34
Streptococcus pneumoniae R6, complete genome Human Pneumonia Multiple 2043 39.86 4.53 40.38 4.29 48.09 22.73
Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence Human Cepacia syndrome Host-associated 3084 66.98 4.49 67.21 4.30 51.95 27.86
Streptococcus pneumoniae D39, complete genome Human Pneumonia Multiple 1914 40.03 4.59 40.50 4.32 47.68 22.19
Streptococcus suis 05ZYH33, complete genome Swine, Human Meningitis, endocarditis, septicemia and arthritis Multiple 2186 41.20 4.62 41.64 4.33 47.63 21.72
Streptococcus pneumoniae Hungary19A-6, complete genome Human Pneumonia Multiple 2155 39.69 4.67 40.28 4.34 0.00 0.00
Streptococcus suis 98HAH33, complete genome Swine, Human Meningitis, endocarditis, septicemia and arthritis Specialized 2185 41.07 4.59 41.46 4.34 47.80 22.00
Burkholderia cenocepacia J2315 chromosome 1, complete genome Human Necrotizing pneumonia and chronic infections Multiple 3464 66.82 4.60 67.12 4.35 51.32 24.94
Burkholderia multivorans ATCC 17616 chromosome 3, complete sequence Human Cepacia syndrome Host-associated 767 66.00 4.52 66.17 4.38 67.39 28.61
Streptococcus pneumoniae TIGR4, complete genome Human Pneumonia, Meningitis, Bacteremia, Sinusitis, Otitis media, Conjunctivitis Multiple 2105 39.46 5.02 40.32 4.39 49.40 24.23
Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence Human Cepacia syndrome Host-associated 3146 66.81 4.63 67.07 4.40 53.01 28.96
Streptococcus pneumoniae CGSP14, complete genome Human Pneumonia Multiple 2206 39.55 4.71 40.08 4.43 48.65 23.54
Porphyromonas gingivalis ATCC 33277, complete genome Human Periodontal disease Host-associated 2090 48.47 4.89 49.27 4.44 41.98 18.36
Burkholderia pseudomallei K96243 chromosome 2, complete sequence Animal Melioidosis Terrestrial 2329 68.18 4.66 68.43 4.45 51.92 25.45
Onion yellows phytoplasma OY-M, complete genome Onion Onions yellow disease Host-associated 754 28.56 4.59 28.58 4.45 76.99 27.59
Yersinia pestis Pestoides F, complete genome Human, Rodent Bubonic plague Multiple 3850 48.06 4.80 48.42 4.47 40.86 17.58
Corynebacterium diphtheriae NCTC 13129, complete genome Human Diphtheria Multiple 2272 53.75 4.64 53.97 4.49 46.76 20.73
Burkholderia vietnamiensis G4 chromosome 2, complete sequence Human Necrotizing pneumonia and chroninc infections Multiple 2096 66.68 4.72 67.02 4.49 54.17 25.83
Streptococcus sanguinis SK36, complete genome Human Endocarditis Host-associated 2270 43.54 4.77 43.98 4.50 45.52 21.66
Mycoplasma synoviae 53, complete genome Chicken Chronic respiratory disease in chicken Host-associated 672 28.74 4.56 28.70 4.50 65.25 31.35
Campylobacter curvus 525.92, complete genome Human Gastroenteritis, periodontal disease Host-associated 1931 44.26 5.45 45.17 4.51 46.82 20.85
Serratia proteamaculans 568, complete genome Human Pneumonia Multiple 4891 55.62 4.71 55.97 4.54 41.36 17.28
Burkholderia pseudomallei K96243 chromosome 1, complete sequence Animal Melioidosis Terrestrial 3399 67.43 4.78 67.73 4.55 53.44 27.31
Burkholderia multivorans ATCC 17616 chromosome 3, complete sequence Human Cepacia syndrome Host-associated 823 65.70 4.76 66.05 4.56 69.62 29.79
Streptococcus gordonii str. Challis substr. CH1, complete genome Human Caries and periodontal diseases Host-associated 2051 40.50 4.81 40.93 4.57 45.76 22.88
Yersinia pestis Nepal516, complete genome Human, Animal Bubonic Plague Multiple 3981 47.91 4.91 48.30 4.58 41.54 17.96
Yersinia pestis Antiqua, complete genome Human, Animal Bubonic plague Multiple 4167 48.01 4.91 48.39 4.58 41.94 17.54
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome Human, Animal Gastroenteritis Multiple 3979 47.74 4.70 47.97 4.58 42.70 19.73
Campylobacter concisus 13826, complete genome Human Gastroenteritis Host-associated 1929 39.18 5.26 39.95 4.60 54.11 28.28
Yersinia pestis KIM, complete genome Human, Rodent Bubonic plague Multiple 4086 47.98 5.00 48.33 4.60 42.12 18.25
Aster yellows witches'-broom phytoplasma AYWB, complete genome Plant Aster yellows witches'-broom Host-associated 671 27.55 4.88 28.19 4.61 76.68 34.32
Escherichia coli APEC O1, complete genome Avian Colibacillosis Host-associated 4428 50.94 4.72 51.11 4.61 43.48 19.40
Yersinia pestis biovar Microtus str. 91001, complete genome Human, Rodent Bubonic plague Multiple 3891 47.78 5.00 48.30 4.62 41.16 17.95
Porphyromonas gingivalis W83, complete genome Human Periodontal disease Host-associated 1909 48.73 4.83 49.22 4.62 41.62 18.98
Yersinia pestis CO92, complete genome Human, Rodent Bubonic plague Multiple 3885 47.92 4.90 48.30 4.65 41.46 17.90
Proteus mirabilis HI4320, complete genome Human Encephalitis, urinary tract infections, surgical wound infections, pyelonephritis, pneumonia, septicemia Host-associated 3607 39.69 4.91 39.89 4.65 46.88 21.85
Escherichia coli E24377A, complete genome Human Diarrhea Host-associated 4749 50.48 5.64 51.44 4.66 44.72 19.66
Xylella fastidiosa M12, complete genome Citrus Citrus variegated chlorosis Host-associated 2104 52.30 5.14 52.81 4.67 0.00 0.00
Escherichia coli UTI89, complete genome Human Cystitis Host-associated 5021 50.39 5.20 51.11 4.67 46.28 21.46
Yersinia pseudotuberculosis IP 31758, complete genome Human, Animal Gastroenteritis Multiple 4124 47.59 5.41 48.27 4.71 41.64 18.03
Yersinia pseudotuberculosis YPIII, complete genome Human Gastroenteritis Multiple 4192 47.68 5.19 48.27 4.71 0.00 0.00
Escherichia coli 536, complete genome Human Urinary tract infection Host-associated 4620 50.53 5.23 51.11 4.77 46.60 23.27
Escherichia coli CFT073, complete genome Human Urinary tract infections Host-associated 5339 50.18 5.55 51.06 4.79 49.45 24.20
Citrobacter koseri ATCC BAA-895, complete genome Human, Animal Bacteremia, meningoencephalitis, multiple brain abscesses Multiple 4980 52.94 6.20 54.33 4.79 43.23 19.80
Yersinia pseudotuberculosis IP 32953, complete genome Human, Animal Gastroenteritis Multiple 3901 48.01 4.97 48.26 4.82 41.63 19.05
Acidovorax avenae subsp. citrulli AAC00-1, complete genome Fruit Bacterial fruit blotch Multiple 4709 68.56 4.93 68.71 4.87 48.76 19.30
Xylella fastidiosa Temecula1, complete genome Plant Black rot and citrus canker Host-associated 2034 52.22 5.17 52.50 4.88 49.62 22.11
Yersinia pseudotuberculosis PB1/+, complete genome Human Gastroenteritis Multiple 4150 47.60 5.37 48.21 4.89 42.93 19.98
Mycoplasma pneumoniae M129, complete genome Human Atypical pneumonia in older children and young adults Host-associated 689 40.26 4.85 40.29 4.89 49.59 20.39
Bacteroides vulgatus ATCC 8482, complete genome Mammal Opportunistic peritoneal diseases Host-associated 4065 42.76 4.99 42.95 4.89 42.18 18.31
Salmonella enterica subsp. enterica serovar Newport str. SL254, complete genome Human, Animal Gastroenteritis Multiple 4612 51.87 6.14 52.97 4.94 45.14 21.49
Bacteroides thetaiotaomicron VPI-5482, complete genome Mammal Opportunistic peritoneal diseases Host-associated 4778 43.33 5.15 43.60 4.95 44.90 19.64
Salmonella enterica subsp. enterica serovar Schwarzengrund str CVM19633, complete genome Human, Animal Gastroenteritis Multiple 4500 51.77 6.10 52.91 4.97 46.60 24.41
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, complete genome Human Typhoid-like disease Host-associated 5592 50.59 6.97 52.78 4.99 49.84 25.41
Salmonella enterica subsp. enterica serovar Dublin str CT_02021853, complete genome Human, Animal Bacteremia, gastroenteritis Multiple 4514 51.79 6.18 52.93 5.01 46.07 22.62
Escherichia coli O157:H7 str. EC4115, complete genome Human Hemorrhagic colitis Multiple 5315 50.32 5.97 51.40 5.02 48.84 22.02
Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Plant Soft rot disease of potatoes Multiple 4472 51.14 5.41 51.61 5.04 42.48 19.47
Burkholderia vietnamiensis G4 chromosome 3, complete sequence Human Necrotizing pneumonia and chroninc infections Multiple 1114 66.18 5.21 66.48 5.07 60.74 23.36
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91, complete genome Poultry Fowl typhoid Multiple 3965 52.55 5.27 52.90 5.08 43.23 21.97
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, complete genome Human, Animal Gastroenteritis Multiple 4650 51.70 6.20 52.82 5.09 46.66 23.43
Salmonella enterica subsp. enterica serovar Choleraesuis str SC-B67, complete genome Human, Animal Salmonellosis and swine paratyphoid Host-associated 4413 52.01 5.72 52.68 5.09 44.96 22.09
Salmonella enterica subsp. enterica serovar Paratyphi A str AKU_12601, complete genome Human Paratyphoid fever Multiple 4078 52.30 5.52 52.83 5.14 44.67 23.07
Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Human Typhoid fever Host-associated 4318 52.24 5.57 52.77 5.16 47.66 26.08
Salmonella typhimurium LT2, complete genome Human Gastroenteritis and food poisoning Host-associated 4423 52.44 5.35 52.80 5.16 44.53 21.26
Salmonella enterica subsp. enterica serovar Enteritidis str P125109, complete genome Human, Animals Salmonellosis Specialized 4206 52.44 5.35 52.78 5.18 43.70 21.71
Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete genome Human Typhoid fever Host-associated 4395 52.17 5.59 52.72 5.18 48.21 26.25
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, complete genome Human Paratyphoid fever Host-associated 4093 52.30 5.58 52.84 5.19 44.60 23.10
Salmonella enterica subsp. enterica serovar Agona str. SL483, complete genome Human, Animal Gastroenteritis Multiple 4562 51.63 6.48 52.82 5.21 45.21 22.39
Aeromonas salmonicida subsp. salmonicida A449, complete genome Fish Furunculosis Aquatic 4086 58.96 5.32 59.30 5.21 47.96 20.52
Salmonella enterica enterica sv Newport str. SL254, complete sequence Human, Animal Gastroenteritis Multiple 190 52.95 5.39 53.21 5.21 59.42 21.63
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome Animal Gastroenteritis, septicemia, and others Multiple 4122 62.23 5.38 62.53 5.25 49.77 21.07
Burkholderia vietnamiensis G4 chromosome 1, complete sequence Human Necrotizing pneumonia and chroninc infections Multiple 3274 66.40 5.53 66.75 5.27 61.80 34.61
Parabacteroides distasonis ATCC 8503, complete genome Mammal Opportunistic peritoneal diseases Host-associated 3850 45.44 5.37 45.65 5.27 46.86 23.51
Bacteroides fragilis YCH46, complete genome Human Severe infection, diarrhea, and abcesses 4578 43.19 5.60 43.79 5.27 43.86 18.55
Microcystis aeruginosa NIES-843, complete genome Animal, Human Cyanobacterial hepatotoxicosis, gastroenteritis, skin irritation Aquatic 6312 42.55 5.41 42.77 5.29 57.12 24.94
Escherichia coli O157:H7 str. Sakai, complete genome Human Hemorrhagic colitis Host-associated 5230 50.61 5.56 51.14 5.29 48.75 22.52
Treponema denticola ATCC 35405, complete genome Human Periodontal disease, gum inflamation Host-associated 2767 37.25 5.76 37.80 5.31 55.64 26.51
Escherichia coli O157:H7 EDL933, complete genome Human Hemorrhagic colitis Host-associated 5312 50.38 5.88 51.02 5.33 50.92 23.03
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genome Human, Animal Gastroenteritis Host-associated 4498 51.15 6.23 52.12 5.35 48.67 25.86
Bacteroides fragilis NCTC 9343, complete genome Human Severe infection, diarrhea, and abcesses Host-associated 4184 43.41 5.62 43.83 5.38 42.79 18.23
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome Human, Animal Pneumonia and urinary tract infections Multiple 4776 57.88 5.81 58.38 5.40 43.20 18.40
Xylella fastidiosa 9a5c, complete genome Plant Citrus variegated chlorosis Host-associated 2766 52.19 6.22 53.41 5.41 54.23 23.96
Enterobacter sakazakii ATCC BAA-894, complete genome Human Meningitis, septicemia, necrotizing enterocolitis Host-associated 4255 56.42 6.28 57.39 5.46 46.12 24.96
Chromobacterium violaceum ATCC 12472, complete genome Human Diarrhea and occasionally septicemia Multiple 4407 64.93 6.18 65.52 5.47 51.63 20.01
Neisseria gonorrhoeae NCCP11945, complete genome Human Gonorrhea Host-associated 2662 51.65 6.98 53.38 5.72 54.24 27.55
Photorhabdus luminescens subsp. laumondii TTO1, complete genome Insect Toxemia and septicemia Host-associated 4683 43.10 5.83 43.19 5.78 48.00 19.82
Neisseria gonorrhoeae FA 1090, complete genome Human Gonorrhea Host-associated 2002 52.66 6.57 53.49 5.96 48.79 24.13
Neisseria meningitidis 053442, complete genome Human Meningitis and septicemia Host-associated 2020 51.53 7.05 52.62 6.29 50.41 28.57
Neisseria meningitidis FAM18, complete genome Human Meningitis and septicemia Host-associated 1917 51.80 7.07 52.56 6.35 50.51 29.77
Neisseria meningitidis Z2491, complete genome Human Meningitis and septicemia Host-associated 2049 51.77 7.09 52.75 6.41 50.70 27.77
Neisseria meningitidis MC58, complete genome Human Meningitis and septicemia Host-associated 2063 51.38 7.55 52.42 6.86 54.12 31.12

 


Bacteria that are primarily non-pathogenic

Organism Habitat No. of protein coding ORFs %G+C Mean (all ORFs) %G+C S.D. (all ORFs)

%G+C Mean (ORFs >300bp)

 %G+C S.D. (ORFs >300bp) Genome Dinucleotide Bias Mean Genome Dinucleotide Bias S.D. Graphical analysis
Rhodopirellula baltica SH 1, complete genome Aquatic 7325 54.91 2.96 55.41 2.32 42.49 18.95
Thermotoga lettingae TMO, complete genome Specialized 2040 38.58 2.46 38.61 2.39 36.50 13.68
Polynucleobacter necessarius STIR1, complete genome Host-associated 1508 45.58 2.84 45.89 2.42 0.00 0.00
Coprothermobacter proteolyticus DSM 5265, complete genome Specialized 1482 44.58 2.77 44.76 2.46 42.79 18.47
Arthrobacter aurescens TC1, complete genome Terrestrial 4041 62.44 2.70 62.59 2.53 36.27 13.42
Acidobacteria bacterium Ellin345, complete genome 4777 58.57 2.67 58.68 2.57 37.83 13.55
Sinorhizobium medicae WSM419, complete genome Multiple 3529 61.69 2.82 61.93 2.58 39.11 16.62
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Host-associated 805 34.55 2.88 34.84 2.63 37.04 16.62
Wolbachia pipientis, complete genome Host-associated 1275 34.35 2.87 34.48 2.65 41.12 16.22
Polynucleobacter sp. QLW-P1DMWA-1, complete genome Aquatic 2077 45.00 2.74 45.06 2.69 42.47 19.06
Candidatus Amoebophilus asiaticus 5a2, complete genome Host-associated 1283 35.54 3.18 35.89 2.69 43.41 16.23
Wolbachia endosymbiont of Drosophila melanogaster, complete genome Host-associated 1195 35.43 3.58 35.09 2.70 43.70 17.21
Acholeplasma laidlawii PG-8A, complete genome Specialized 1380 31.96 2.88 31.95 2.72 46.11 19.30
Sinorhizobium meliloti 1021, complete genome Multiple 3360 63.01 2.98 63.26 2.77 39.67 16.54
Alteromonas macleodii 'Deep ecotype', complete genome Aquatic 4072 44.90 3.40 45.43 2.82 46.00 20.44
Colwellia psychrerythraea 34H, complete genome Specialized 4910 38.03 3.50 38.61 2.83 43.76 17.72
Dictyoglomus thermophilum H-6-12, complete genome Aquatic 1912 33.57 3.14 33.68 2.88 45.08 18.00
Leuconostoc citreum KM20, complete genome 1702 39.15 3.06 39.30 2.89 0.00 0.00
Rhodococcus sp. RHA1, complete genome Terrestrial 7211 67.46 3.09 67.67 2.89 42.01 17.36
Saccharopolyspora erythraea NRRL 2338, complete genome Terrestrial 7197 71.31 3.11 71.55 2.89 44.85 16.60
Ralstonia eutropha JMP134 chromosome 2, complete sequence Multiple 2407 65.27 3.11 65.46 2.93 41.76 15.32
Stenotrophomonas maltophilia R551-3, complete genome Multiple 4039 66.50 3.05 66.64 2.93 46.83 20.05
Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome 610 31.96 3.14 31.98 2.95 38.84 16.15
Pseudoalteromonas haloplanktis TAC125 chromosome I, complete genome Aquatic 2939 40.39 3.39 40.78 2.96 48.43 21.74
Vibrio fischeri MJ11 chromosome I, complete sequence Multiple 2590 39.17 3.20 39.30 2.97 44.39 18.71
Vibrio fischeri ES114 chromosome I, complete sequence Multiple 2586 39.21 3.17 39.31 2.98 44.50 19.81
Mycobacterium vanbaalenii PYR-1, complete genome 5979 67.94 3.09 68.06 2.99 39.97 16.00
Candidatus Vesicomyosocius okutanii HA, complete genome Host-associated 937 32.44 3.07 32.52 2.99 39.81 14.84
Rhodopseudomonas palustris CGA009, complete genome Multiple 4813 65.23 3.17 65.44 2.99 40.29 16.07
Shewanella frigidimarina NCIMB 400, complete genome Multiple 4029 42.09 3.12 42.21 3.00 41.99 17.97
Lactobacillus johnsonii NCC 533, complete genome Host-associated 1821 34.52 3.16 34.59 3.00 48.78 20.50
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), complete genome 976 34.92 3.10 35.06 3.02 39.32 18.13
Bradyrhizobium sp. ORS278, complete genome Host-associated 6717 65.78 3.31 66.05 3.02 42.49 18.98
Thermus thermophilus HB8, complete genome Specialized 1973 69.33 3.26 69.61 3.03 54.63 26.44
Silicibacter sp. TM1040, complete genome Multiple 3030 60.41 3.16 60.59 3.03 38.50 15.78
Oceanobacillus iheyensis HTE831, complete genome Multiple 3500 35.61 3.24 35.77 3.05 43.79 18.97
Roseobacter denitrificans OCh 114, complete genome Multiple 3946 58.98 3.48 59.34 3.05 38.75 15.58
Mycobacterium gilvum PYR-GCK, complete genome 5241 68.01 3.16 68.14 3.05 42.17 18.06
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome Multiple 1970 37.86 3.35 38.06 3.06 44.15 19.65
Novosphingobium aromaticivorans DSM 12444, complete genome Multiple 3324 65.30 3.21 65.45 3.06 40.87 17.76
Lactobacillus gasseri ATCC 33323, complete genome Host-associated 1755 35.09 3.27 35.22 3.06 48.98 19.51
Pseudoalteromonas haloplanktis TAC125 chromosome II, complete sequence Aquatic 546 39.89 3.43 40.21 3.06 46.05 20.23
Rhizobium etli CFN 42, complete genome Host-associated 4035 61.61 3.19 61.76 3.07 40.20 16.24
Clostridium acetobutylicum ATCC 824, complete genome Multiple 3672 31.08 3.28 31.23 3.07 46.88 18.43
Rhizobium leguminosarum bv. viciae 3841, complete genome Host-associated 4694 61.51 3.25 61.72 3.07 41.83 17.05
Arthrobacter sp. FB24 chromosome 1, complete sequence 4146 65.58 3.19 65.73 3.07 37.32 13.96
Mesorhizobium sp. BNC1, complete genome Multiple 4064 61.13 3.22 61.26 3.08 43.90 18.47
Caulobacter crescentus CB15, complete genome Aquatic 3737 67.28 3.33 67.53 3.08 40.79 15.63
Myxococcus xanthus DK 1622, complete genome Terrestrial 7331 68.63 3.29 68.83 3.08 45.84 18.13
Lactobacillus salivarius UCC118, complete genome Host-associated 1717 32.80 3.30 33.01 3.09 50.63 22.38
Lactobacillus reuteri F275, complete genome Host-associated 1820 39.15 3.24 39.23 3.10 43.69 18.59
Thermotoga maritima MSB8, complete genome Specialized 1858 46.09 3.37 46.27 3.10 42.21 19.19
Mycobacterium sp. MCS, complete genome 5391 68.58 3.21 68.70 3.11 41.17 16.81
Ralstonia pickettii 12J chromosome 2, complete sequence Multiple 1153 64.67 3.41 64.92 3.11 42.68 16.78
Thermus thermophilus HB27, complete genome Specialized 1982 69.36 3.27 69.57 3.12 53.77 25.15
Mycobacterium sp. KMS, complete genome Multiple 5460 68.56 3.23 68.70 3.12 41.61 17.26
Idiomarina loihiensis L2TR, complete genome Specialized 2628 47.04 3.23 47.21 3.12 40.41 18.04
Candidatus Blochmannia floridanus, complete genome Specialized 583 28.77 3.26 28.79 3.12 43.09 16.92
Thermosynechococcus elongatus BP-1, complete genome Specialized 2476 54.12 3.23 54.34 3.12 35.28 14.60
Rhizobium leguminosarum bv. trifolii WSM2304, complete genome Host-associated 4325 61.87 3.32 62.13 3.13 41.27 19.12
Ralstonia eutropha JMP134 chromosome 1, complete sequence Multiple 3439 64.83 3.27 64.98 3.13 42.15 16.54
Thermotoga petrophila RKU-1, complete genome Aquatic 1785 46.02 3.27 46.15 3.13 42.16 18.77
Rhizobium etli CIAT 652, complete genome Host-associated 4343 61.82 3.47 62.16 3.13 41.19 17.14
Gramella forsetii KT0803, complete genome Multiple 3584 36.46 3.62 36.79 3.13 44.45 19.59
Clostridium beijerinckii NCIMB 8052, complete genome 5020 30.63 3.23 30.68 3.14 47.35 18.28
Opitutus terrae PB90-1, complete genome Aquatic 4612 65.02 3.28 65.19 3.14 0.00 0.00
Lactobacillus sakei subsp. sakei 23K, complete genome Multiple 1879 41.46 3.39 41.79 3.15 45.09 20.17
Streptomyces avermitilis MA-4680, complete genome Multiple 7580 70.70 3.30 70.88 3.15 46.72 18.36
Listeria innocua Clip11262, complete genome Multiple 2968 37.44 3.31 37.60 3.17 46.14 18.78
Mycobacterium sp. JLS, complete genome Multiple 5739 68.46 3.26 68.58 3.17 42.50 18.40
Bradyrhizobium sp. BTAi1, complete genome Host-associated 7394 65.09 3.41 65.35 3.17 45.52 21.39
Pediococcus pentosaceus ATCC 25745, complete genome Multiple 1755 37.46 3.43 37.65 3.18 48.31 23.11
Lactobacillus reuteri F275, complete genome 1900 38.98 3.35 39.16 3.18 44.68 19.46
Lactobacillus casei ATCC 334, complete genome Multiple 2751 46.68 3.62 47.09 3.18 41.20 17.74
Thermotoga sp. RQ2, complete genome Specialized 1819 46.10 3.27 46.19 3.19 0.00 0.00
Shewanella pealeana ATCC 700345, complete genome 4241 45.18 3.28 45.35 3.19 42.38 15.87
Psychrobacter cryohalolentis K5, complete genome Multiple 2467 43.76 3.25 43.87 3.19 42.75 19.30
Petrotoga mobilis SJ95, complete genome Specialized 1898 33.98 3.25 34.02 3.19 40.17 15.18
Fervidobacterium nodosum Rt17-B1, complete genome Specialized 1750 35.13 3.24 35.16 3.20 40.92 14.73
Psychrobacter arcticus 273-4, complete genome Specialized 2120 44.09 3.30 44.24 3.20 43.39 19.52
Rhodopseudomonas palustris TIE-1, complete genome 5246 65.08 3.42 65.33 3.20 43.09 18.12
Oligotropha carboxidovorans OM5, complete genome Multiple 3722 62.38 3.90 63.01 3.20 44.69 18.11
Burkholderia phymatum STM815 chromosome 1, complete sequence Host-associated 3072 63.22 3.39 63.45 3.21 41.95 17.76
Erythrobacter litoralis HTCC2594, complete genome Aquatic 3011 63.05 3.61 63.43 3.21 39.96 16.05
Azorhizobium caulinodans ORS 571, complete genome Host-associated 4717 67.41 3.33 67.55 3.22 41.07 17.98
Francisella tularensis subsp. novicida U112, complete genome Multiple 1719 32.83 3.29 32.92 3.22 43.40 16.19
Listeria welshimeri serovar 6b str. SLCC5334, complete genome Multiple 2774 36.29 3.56 36.50 3.23 44.81 20.54
Sulfurimonas denitrificans DSM 1251, complete genome 2096 34.46 3.28 34.56 3.23 44.36 21.13
Psychrobacter sp. PRwf-1, complete genome Aquatic 2370 45.93 3.38 46.14 3.23 42.91 21.10
Photobacterium profundum SS9 chromosome 1, complete sequence Multiple 3416 42.37 3.35 42.47 3.23 44.24 18.32
Thiomicrospira crunogena XCL-2, complete genome Aquatic 2196 43.52 3.38 43.72 3.24 44.21 22.01
Maricaulis maris MCS10, complete genome Aquatic 3063 62.87 3.31 62.98 3.24 41.19 16.59
Solibacter usitatus Ellin6076, complete genome Terrestrial 7826 61.86 3.38 62.04 3.24 40.14 14.57
Salinispora tropica CNB-440, complete genome Aquatic 4536 69.44 3.32 69.60 3.24 43.01 16.86
Bacillus pumilus SAFR-032, complete genome Terrestrial 3681 41.07 3.65 41.55 3.25 41.37 19.58
Lactobacillus brevis ATCC 367, complete genome Multiple 2185 46.63 3.60 47.01 3.25 40.85 16.56
Lactobacillus casei, complete genome Specialized 3044 46.51 3.59 46.77 3.26 44.12 19.86
Hydrogenobaculum sp. Y04AAS1, complete genome Aquatic 1629 34.89 3.42 34.89 3.27 42.43 17.12
Mesorhizobium loti MAFF303099, complete genome Multiple 6743 62.95 3.53 63.26 3.27 42.28 16.31
Clostridium phytofermentans ISDg, complete genome Terrestrial 3902 35.95 3.36 35.99 3.27 42.72 17.21
Lactococcus lactis subsp. cremoris MG1363, complete genome Multiple 2434 35.99 3.62 36.27 3.29 53.24 23.47
Shewanella halifaxensis HAW-EB4, complete genome 4278 45.20 3.38 45.36 3.29 42.63 16.48
Lactococcus lactis subsp. lactis Il1403, complete genome Multiple 2321 35.64 3.56 35.80 3.29 53.25 23.33
Shewanella woodyi ATCC 51908, complete genome Multiple 4880 43.99 3.39 44.16 3.29 0.00 0.00
Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Host-associated 595 34.06 3.47 34.14 3.29 41.16 17.16
Lactococcus lactis subsp. cremoris SK11, complete genome Multiple 2384 36.12 3.69 36.47 3.29 51.83 22.27
Rhodopseudomonas palustris BisB5, complete genome Multiple 4397 64.98 3.46 65.25 3.30 42.75 17.97
Jannaschia sp. CCS1, complete genome Aquatic 4212 62.35 3.42 62.52 3.30 38.20 15.26
Lactobacillus acidophilus NCFM, complete genome Multiple 1862 34.79 3.54 34.91 3.30 47.34 19.37
Marinomonas sp. MWYL1, complete genome Aquatic 4439 43.05 3.35 43.11 3.31 42.96 17.28
Rhodobacter sphaeroides ATCC 17025, complete genome Multiple 3111 68.34 3.47 68.54 3.32 41.72 16.36
Prosthecochloris vibrioformis DSM 265, complete genome Aquatic 1753 53.25 3.40 53.39 3.32 37.76 15.03
Acidothermus cellulolyticus 11B, complete genome Aquatic 2157 66.74 3.40 66.83 3.32 41.72 16.99
Helicobacter pylori G27, complete genome Host-associated 1493 39.14 3.74 39.49 3.33 43.64 19.67
Sulfurihydrogenibium sp. YO3AOP1, complete genome Specialized 1721 31.73 3.45 31.80 3.33 43.54 17.83
Dehalococcoides sp. BAV1, complete genome 1371 47.53 3.61 47.81 3.34 39.11 20.06
Ralstonia metallidurans CH34 chromosome 2, complete sequence Specialized 2313 63.77 3.52 64.00 3.35 44.10 18.02
Clostridium botulinum B str. Eklund 17B, complete genome Multiple 3473 27.99 3.63 28.14 3.35 50.36 19.86
Clostridium novyi NT, complete genome Terrestrial 2315 28.96 3.46 29.01 3.36 49.15 19.58
Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome Host-associated 504 26.92 3.44 26.87 3.36 43.92 16.57
Elusimicrobium minutum Pei191, complete genome Host-associated 1529 40.07 3.57 40.28 3.36 48.93 30.02
Dehalococcoides sp. CBDB1, complete genome Multiple 1458 47.26 3.75 47.67 3.36 38.03 17.54
Bacillus halodurans C-125, complete genome Multiple 4066 43.66 3.70 44.03 3.37 39.33 16.73
Nitrosospira multiformis ATCC 25196 chromosome 1, complete sequence Terrestrial 2757 54.24 3.57 54.45 3.39 37.70 13.85
Rhodopseudomonas palustris HaA2, complete genome Multiple 4683 66.14 3.54 66.37 3.39 42.68 18.39
Wolinella succinogenes DSM 1740, complete genome Host-associated 2042 48.63 3.50 48.78 3.39 43.11 18.40
Nitrobacter winogradskyi Nb-255, complete genome Terrestrial 3122 62.44 3.62 62.72 3.39 43.25 17.44
Ralstonia metallidurans CH34 chromosome 1, complete sequence Specialized 3601 63.96 3.54 64.12 3.40 44.65 18.56
Vibrio fischeri MJ11 chromosome II, complete sequence Multiple 1254 37.27 3.71 37.60 3.40 41.97 15.98
Thermosipho melanesiensis BI429, complete genome 1879 31.05 3.59 31.09 3.41 46.41 17.53
Burkholderia phytofirmans PsJN chromosome 1, complete sequence Terrestrial 3922 62.82 3.61 63.07 3.41 44.58 20.08
Streptomyces coelicolor A3(2), complete genome Multiple 7769 72.07 3.61 72.27 3.42 46.51 16.74
Salinispora arenicola CNS-205, complete genome Aquatic 4917 69.55 3.52 69.69 3.42 45.17 19.72
Silicibacter pomeroyi DSS-3, complete genome Aquatic 3810 64.59 3.55 64.74 3.43 40.88 18.57
Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence Multiple 2973 68.89 3.66 69.10 3.45 41.88 17.61
Streptomyces griseus subsp. griseus NBRC 13350, complete genome Multiple 7136 71.98 3.60 72.16 3.46 0.00 0.00
Burkholderia phytofirmans PsJN chromosome 2, complete sequence Terrestrial 3152 62.43 3.63 62.64 3.46 44.55 17.76
Ralstonia pickettii 12J chromosome 1, complete sequence Multiple 3709 63.57 3.68 63.82 3.46 46.06 18.53
Thermodesulfovibrio yellowstonii DSM 11347, complete genome Specialized 2033 33.86 3.63 33.89 3.47 42.49 20.23
Nocardioides sp. JS614, complete genome Terrestrial 4645 71.76 3.53 71.89 3.47 46.16 17.25
Parvibaculum lavamentivorans DS-1, complete genome Multiple 3636 62.59 3.59 62.70 3.50 47.25 21.45
Hyphomonas neptunium ATCC 15444, complete genome Aquatic 3505 62.10 3.66 62.32 3.50 41.71 15.15
Methylococcus capsulatus str. Bath, complete genome Multiple 2956 63.47 3.81 63.75 3.51 40.53 16.05
Marinobacter aquaeolei VT8, complete genome Aquatic 3858 57.44 3.61 57.65 3.51 40.87 16.13
Corynebacterium glutamicum R, complete genome Multiple 3052 54.72 3.72 54.93 3.51 45.15 20.85
Frankia sp. CcI3, complete genome Multiple 4499 69.98 3.62 70.18 3.51 46.90 18.78
Photobacterium profundum SS9 chromosome 2, complete sequence Multiple 2006 41.70 3.63 41.84 3.52 44.99 16.89
Shewanella sediminis HAW-EB3, complete genome Aquatic 4497 46.69 3.68 46.92 3.53 41.93 16.79
Bradyrhizobium japonicum USDA 110, complete genome Host-associated 8317 64.12 3.75 64.40 3.53 46.64 19.75
Dehalococcoides ethenogenes 195, complete genome Multiple 1580 48.76 4.21 49.46 3.53 46.93 28.82
Saccharophagus degradans 2-40, complete genome Aquatic 4008 46.18 3.60 46.26 3.55 52.51 24.61
Burkholderia cenocepacia HI2424 chromosome 3, complete sequence 918 67.28 3.76 67.52 3.55 47.62 19.46
Deinococcus geothermalis DSM 11300, complete genome Aquatic 2335 66.82 3.70 66.95 3.56 40.56 14.11
Natranaerobius thermophilus JW/NM-WN-LF, complete genome Specialized 2882 36.34 3.75 36.54 3.56 40.54 16.27
Shewanella baltica OS155, complete genome Aquatic 4307 46.84 3.64 47.01 3.57 40.60 15.82
Streptococcus thermophilus LMG 18311, complete genome Multiple 1889 39.42 3.75 39.70 3.57 47.38 22.56
Rickettsia massiliae MTU5, complete genome Host-associated 968 32.29 3.64 32.44 3.58 44.91 20.59
Kocuria rhizophila DC2201, complete genome Multiple 2357 70.94 3.83 71.12 3.59 45.96 20.07
Caldicellulosiruptor saccharolyticus DSM 8903, complete genome Specialized 2679 35.37 3.64 35.39 3.60 47.57 20.06
Sphingopyxis alaskensis RB2256, complete genome Aquatic 3165 65.57 3.76 65.74 3.60 44.53 18.06
Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete genome Host-associated 564 27.33 3.70 27.26 3.62 44.55 18.70
Shewanella sp. MR-4, complete genome Multiple 3924 48.43 3.72 48.64 3.62 41.37 17.33
Alcanivorax borkumensis SK2, complete genome Aquatic 2755 54.83 3.73 55.01 3.62 39.20 15.19
Chloroflexus aurantiacus J-10-fl, complete genome Specialized 3853 56.76 3.69 56.85 3.63 36.23 15.23
Gluconobacter oxydans 621H, complete genome Multiple 2432 61.46 3.86 61.61 3.65 40.79 15.66
Shewanella sp. MR-7, complete genome Aquatic 4006 48.37 3.75 48.57 3.65 42.53 18.53
Vibrio fischeri ES114 chromosome II, complete sequence Multiple 1175 37.27 3.84 37.52 3.65 42.88 17.00
Anaeromyxobacter sp. Fw109-5, complete genome Terrestrial 4466 73.23 3.77 73.41 3.65 45.99 18.39
Streptococcus thermophilus LMD-9, complete genome Multiple 1710 39.31 4.08 39.83 3.67 47.98 23.29
Frankia alni ACN14a, complete genome Host-associated 6711 72.11 4.30 72.70 3.67 47.86 20.81
Rhodopseudomonas palustris BisB18, complete genome Multiple 4886 65.03 3.87 65.31 3.67 43.06 16.52
Rhodospirillum centenum SW, complete genome Aquatic 4002 70.48 3.92 70.69 3.67 44.76 17.58
Streptococcus thermophilus CNRZ1066, complete genome Multiple 1915 39.34 3.89 39.65 3.68 47.97 22.97
Caulobacter sp. K31, complete genome 5061 67.78 3.85 68.02 3.68 44.42 17.20
Pseudomonas putida F1, complete genome Multiple 5252 61.99 3.83 62.23 3.68 46.64 20.23
Prochlorococcus marinus str. MIT 9211, complete genome Aquatic 1855 38.50 3.88 38.46 3.69 48.44 22.29
Syntrophobacter fumaroxidans MPOB, complete genome Aquatic 4064 59.71 3.83 59.88 3.69 38.51 15.76
Burkholderia phymatum STM815 chromosome 2, complete sequence Host-associated 2349 62.69 3.82 62.87 3.69 48.21 21.55
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome Aquatic 1883 37.01 3.99 37.02 3.70 46.85 18.30
Corynebacterium glutamicum ATCC 13032, complete genome Multiple 2993 54.31 3.83 54.52 3.70 46.62 21.25
Aquifex aeolicus VF5, complete genome Specialized 1529 43.45 3.70 43.46 3.71 39.02 17.68
Cupriavidus taiwanensis, complete genome Host-associated 3135 67.52 3.97 67.80 3.72 45.11 17.60
Sphingomonas wittichii RW1, complete genome Aquatic 4850 68.70 3.86 68.87 3.72 45.74 17.85
Corynebacterium efficiens YS-314, complete genome Multiple 2950 63.03 4.20 63.53 3.72 48.10 23.91
Oenococcus oeni PSU-1, complete genome Multiple 1691 37.95 4.38 38.51 3.74 45.63 21.23
Corynebacterium glutamicum ATCC 13032, complete genome Multiple 3057 54.23 3.92 54.49 3.75 46.56 21.16
Chlorobium phaeobacteroides BS1, complete genome Aquatic 2469 48.93 4.12 49.41 3.75 37.73 15.43
Psychromonas ingrahamii 37, complete genome Aquatic 3545 40.65 3.86 40.86 3.75 44.58 18.94
Shewanella denitrificans OS217, complete genome Aquatic 3754 45.58 3.82 45.71 3.76 41.19 17.82
Roseiflexus castenholzii DSM 13941, complete genome Aquatic 4330 60.37 3.89 60.53 3.76 39.14 18.06
Acaryochloris marina MBIC11017, complete genome Aquatic 6254 47.38 4.45 48.17 3.76 41.53 16.50
Shewanella amazonensis SB2B, complete genome Multiple 3645 53.89 3.86 54.07 3.77 40.32 18.55
Rhodopseudomonas palustris BisA53, complete genome Multiple 4878 64.57 3.96 64.89 3.77 44.27 16.89
Methylibium petroleiphilum PM1, complete genome Aquatic 3819 69.05 3.88 69.20 3.77 47.76 18.76
Kineococcus radiotolerans SRS30216, complete genome Multiple 4480 74.20 3.88 74.39 3.77 55.13 20.95
Lactobacillus plantarum WCFS1, complete genome Host-associated 3007 45.07 4.00 45.38 3.78 42.76 18.99
Shewanella baltica OS185, complete genome Aquatic 4323 46.95 3.86 47.11 3.78 41.43 17.19
Thermoanaerobacter tengcongensis MB4, complete genome Specialized 2588 37.40 4.04 37.64 3.78 46.26 19.64
Pelodictyon luteolum DSM 273, complete genome Multiple 2083 57.61 3.94 57.86 3.78 40.34 17.11
Nitratiruptor sp. SB155-2, complete genome Specialized 1843 39.50 3.88 39.62 3.79 43.55 18.34
Synechococcus sp. JA-2-3B'a(2-13), complete genome Specialized 2862 58.48 4.07 58.96 3.81 39.68 14.94
Alkaliphilus metalliredigens QYMF, complete genome 4625 36.81 3.99 37.08 3.81 49.04 20.33
Shewanella baltica OS195, complete genome Aquatic 4499 46.87 3.90 47.04 3.81 42.21 17.39
Lactobacillus helveticus DPC 4571, complete genome Multiple 1610 37.40 3.87 37.51 3.81 47.76 20.17
Ralstonia eutropha H16 chromosome 2, complete sequence Specialized 2555 66.96 3.95 67.14 3.81 48.51 19.26
Rickettsia bellii RML369-C, complete genome Host-associated 1429 31.34 3.91 31.43 3.82 45.61 17.89
Pseudomonas putida KT2440, complete genome Multiple 5350 61.83 4.04 62.13 3.82 47.22 20.01
Alkaliphilus oremlandii OhILAs, complete genome Aquatic 2836 36.54 3.90 36.73 3.82 46.44 20.58
Thermoanaerobacter sp. X514, complete genome 2349 34.39 3.95 34.49 3.83 47.03 17.43
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II, complete sequence Multiple 266 39.21 3.79 39.26 3.84 41.14 13.44
Mannheimia succiniciproducens MBEL55E, complete genome Host-associated 2369 42.00 5.13 43.16 3.85 46.55 23.37
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome II, complete sequence Multiple 276 39.17 3.87 39.26 3.85 42.16 14.79
Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome Host-associated 546 26.26 3.97 26.15 3.86 45.09 17.00
Xanthobacter autotrophicus Py2, complete genome Multiple 4746 67.51 3.97 67.71 3.86 46.82 20.33
Rickettsia bellii OSU 85-389, complete genome 1476 31.14 4.18 31.47 3.86 47.22 17.72
Shewanella sp. ANA-3 chromosome 1, complete sequence Multiple 4111 48.59 4.01 48.79 3.86 42.82 19.08
Pseudomonas putida GB-1, complete genome Multiple 5409 62.19 4.01 62.44 3.87 47.13 20.94
Ralstonia eutropha H16 chromosome 1, complete sequence Specialized 3651 66.66 4.02 66.87 3.87 46.30 18.69
Cytophaga hutchinsonii ATCC 33406, complete genome Multiple 3785 38.69 4.14 39.02 3.87 46.07 20.57
Cupriavidus taiwanensis, complete genome Host-associated 2243 67.90 4.11 68.22 3.88 47.44 20.71
Methylobacterium populi BJ001, complete genome 5314 69.70 4.03 69.93 3.88 46.72 19.56
Prosthecochloris aestuarii DSM 271, complete genome Aquatic 2263 50.15 4.10 50.49 3.88 38.80 18.05
Zymomonas mobilis subsp. mobilis ZM4, complete genome Multiple 1998 46.43 5.31 47.64 3.89 45.25 19.83
Flavobacterium johnsoniae UW101, complete genome Multiple 5017 34.45 3.97 34.49 3.89 52.95 21.63
Nitrobacter hamburgensis X14, complete genome Terrestrial 3804 62.04 4.09 62.38 3.89 46.27 18.51
Pseudomonas stutzeri A1501, complete genome Host-associated 4128 63.79 4.21 64.14 3.89 45.76 18.52
Thermoanaerobacter pseudethanolicus ATCC 33223, complete genome Aquatic 2243 34.32 4.01 34.44 3.89 46.82 17.97
Burkholderia cepacia AMMD chromosome 2, complete sequence Multiple 2346 66.96 4.07 67.21 3.89 47.74 20.86
Pseudomonas putida W619, complete genome Multiple 5182 61.60 4.02 61.85 3.90 0.00 0.00
Pseudomonas fluorescens Pf-5, complete genome Multiple 6138 63.52 4.07 63.77 3.90 45.57 18.75
Pseudomonas fluorescens Pf0-1, complete genome Multiple 5736 60.63 4.15 60.92 3.91 42.08 19.08
Anabaena variabilis ATCC 29413, complete genome Multiple 5043 42.19 4.00 42.31 3.92 39.77 15.24
Frankia sp. EAN1pec, complete genome Multiple 7191 70.93 4.05 71.16 3.92 47.21 17.46
Herpetosiphon aurantiacus ATCC 23779, complete genome Multiple 4976 50.64 4.00 50.73 3.92 44.65 21.57
Bacillus clausii KSM-K16, complete genome 4096 44.68 4.04 44.89 3.93 44.23 24.39
Leptothrix cholodnii SP-6, complete genome Aquatic 4363 68.81 4.05 69.00 3.93 0.00 0.00
Magnetospirillum magneticum AMB-1, complete genome Aquatic 4559 65.55 4.21 65.86 3.94 45.31 22.53
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence Multiple 3391 38.82 4.08 38.91 3.94 43.94 20.80
Azoarcus sp. BH72, complete genome Host-associated 3989 67.83 4.13 68.03 3.95 46.42 18.05
Salinibacter ruber DSM 13855, complete genome Specialized 2801 66.46 4.24 66.77 3.95 43.17 16.38
Dinoroseobacter shibae DFL 12, complete genome 3577 66.00 4.10 66.22 3.96 42.14 15.83
Polaromonas sp. JS666, complete genome Multiple 4817 62.60 4.16 62.83 3.96 48.26 19.82
Halorhodospira halophila SL1, complete genome 2407 67.91 4.09 68.13 3.96 48.23 21.29
Nostoc sp. PCC 7120, complete genome Multiple 5366 42.00 4.11 42.18 3.96 40.75 16.05
Paracoccus denitrificans PD1222 chromosome 2, complete sequence Multiple 1662 66.77 4.14 67.02 3.97 43.52 17.09
Azoarcus sp. EbN1, complete genome Terrestrial 4133 64.74 4.42 65.23 3.97 54.93 22.21
Alkalilimnicola ehrlichei MLHE-1, complete genome Aquatic 2865 67.38 4.14 67.59 3.98 44.37 18.10
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome I, complete sequence Multiple 3277 38.89 4.02 38.89 3.98 43.59 20.87
Methylobacterium radiotolerans JCM 2831, complete genome Host-associated 5686 71.63 4.10 71.79 3.99 0.00 0.00
Thiobacillus denitrificans ATCC 25259, complete genome Multiple 2827 65.88 4.18 66.15 3.99 47.79 22.17
Methylobacterium extorquens PA1, complete genome Multiple 4829 68.64 4.16 68.91 3.99 46.30 22.12
Burkholderia cenocepacia HI2424 chromosome 2, complete sequence 2686 66.92 4.27 67.22 4.01 48.03 21.28
Sorangium cellulosum 'So ce 56', complete genome Terrestrial 9384 71.02 4.11 71.16 4.01 49.57 20.12
Symbiobacterium thermophilum IAM 14863, complete genome Terrestrial 3338 68.88 4.16 69.17 4.01 44.58 16.70
Prochlorococcus marinus subsp. pastoris str. CCMP1986, complete genome Aquatic 1717 31.44 4.23 31.42 4.02 45.65 17.84
Beijerinckia indica subsp. indica ATCC 9039, complete genome 3569 57.87 4.17 58.11 4.02 0.00 0.00
Synechococcus elongatus PCC 6301, complete genome Aquatic 2527 55.98 4.05 56.09 4.02 37.81 16.50
Exiguobacterium sibiricum 255-15, complete genome Specialized 3007 47.91 4.24 48.28 4.02 0.00 0.00
Candidatus Pelagibacter ubique HTCC1062, complete genome Aquatic 1354 29.30 4.13 29.33 4.02 48.21 17.55
Bifidobacterium longum DJO10A, complete genome Host-associated 1990 60.56 4.30 60.89 4.02 45.39 18.37
Methylacidiphilum infernorum V4, complete genome Specialized 2472 44.35 5.40 45.69 4.04 44.83 21.84
Roseiflexus sp. RS-1, complete genome Specialized 4517 60.36 4.18 60.56 4.04 40.79 19.15
Synechococcus sp. PCC 7002, complete genome Aquatic 2823 50.10 4.34 50.50 4.04 0.00 0.00
Burkholderia cepacia AMMD chromosome 1, complete sequence Multiple 3213 66.92 4.28 67.22 4.05 48.55 22.25
Magnetococcus sp. MC-1, complete genome Aquatic 3716 54.32 4.16 54.48 4.05 54.70 26.29
Prochlorococcus marinus str. MIT 9301, complete genome Aquatic 1907 31.59 4.38 31.93 4.05 46.76 18.59
Paracoccus denitrificans PD1222 chromosome 1, complete sequence Multiple 2799 66.57 4.21 66.87 4.06 45.89 20.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence Multiple 3022 68.78 4.15 68.95 4.06 43.75 20.55
Janthinobacterium sp. Marseille, complete genome Aquatic 3697 54.72 4.12 54.83 4.06 47.00 21.49
Rhodospirillum rubrum ATCC 11170, complete genome Multiple 3791 65.73 4.27 65.95 4.08 42.10 17.35
Burkholderia cepacia AMMD chromosome 3, complete sequence Multiple 1013 66.16 4.31 66.46 4.09 53.05 21.70
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, complete genome Host-associated 611 23.50 4.18 23.42 4.09 46.81 19.03
Prochlorococcus marinus str. MIT 9215, complete genome Aquatic 1983 31.47 4.41 31.76 4.09 47.44 19.25
Nostoc punctiforme PCC 73102, complete genome Multiple 6087 42.28 4.13 42.41 4.10 39.95 15.35
Clostridium thermocellum ATCC 27405, complete genome Multiple 3189 39.72 4.22 39.90 4.11 46.08 20.68
Prochlorococcus marinus str. AS9601, complete genome Aquatic 1921 31.48 4.43 31.81 4.11 48.12 20.17
Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome Multiple 2941 62.87 4.18 63.07 4.11 42.17 18.43
Rhodoferax ferrireducens T118, complete genome Multiple 4170 60.13 4.20 60.30 4.11 44.20 18.14
Herminiimonas arsenicoxydans, complete genome Aquatic 3325 54.41 4.55 54.97 4.12 49.65 21.99
Burkholderia cenocepacia HI2424 chromosome 1, complete sequence 3159 66.90 4.32 67.16 4.13 47.44 20.54
Trichodesmium erythraeum IMS101, complete genome Aquatic 4451 36.03 4.32 36.21 4.13 46.58 18.86
Burkholderia thailandensis E264 chromosome I, complete sequence Terrestrial 3276 67.31 4.35 67.46 4.15 49.99 24.03
Prochlorococcus marinus str. MIT 9515, complete genome Aquatic 1906 31.24 4.51 31.52 4.15 47.49 19.29
Nitrosomonas europaea ATCC 19718, complete genome Multiple 2461 50.82 4.40 51.08 4.15 43.77 19.03
Synechococcus sp. JA-3-3Ab, complete genome Specialized 2760 60.19 4.44 60.71 4.16 42.46 16.20
Synechococcus elongatus PCC 7942, complete genome Aquatic 2612 55.84 4.21 56.01 4.17 38.55 17.06
Prochlorococcus marinus str. NATL2A, complete genome Aquatic 2163 35.61 4.50 35.82 4.18 49.39 20.39
Candidatus Sulcia muelleri GWSS, complete genome 227 21.52 4.53 21.71 4.18 58.68 26.96
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Multiple 3379 62.04 5.68 63.22 4.18 45.51 19.92
Deinococcus radiodurans R1 chromosome 1, complete sequence Terrestrial 2629 67.25 4.30 67.42 4.19 41.84 16.98
Campylobacter hominis ATCC BAA-381, complete genome Host-associated 1682 31.82 5.24 32.88 4.20 66.80 40.31
Prochlorococcus marinus str. MIT 9312, complete genome Aquatic 1810 31.73 4.34 31.73 4.20 44.96 17.28
Burkholderia thailandensis E264 chromosome II, complete sequence Terrestrial 2358 67.58 4.44 67.81 4.21 51.28 22.98
Prochlorococcus marinus str. NATL1A, complete genome Aquatic 2193 35.54 4.51 35.68 4.21 49.76 21.44
Actinobacillus succinogenes 130Z, complete genome Host-associated 2079 45.47 4.33 45.67 4.22 45.16 24.90
Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence Multiple 1052 68.83 4.33 68.97 4.23 47.55 20.38
Methylobacillus flagellatus KT, complete genome Specialized 2753 55.83 4.40 56.09 4.24 42.87 18.77
Enterobacter sp. 638, complete genome 4115 53.36 4.36 53.65 4.24 41.21 18.32
Anaeromyxobacter sp. K, complete genome Terrestrial 4457 74.54 4.42 74.74 4.26 49.65 18.62
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence Multiple 835 68.89 4.45 69.07 4.27 46.09 21.69
Dechloromonas aromatica RCB, complete genome Multiple 4171 59.34 4.35 59.50 4.28 42.16 18.35
Desulfovibrio desulfuricans G20, complete genome Multiple 3775 57.05 5.42 57.92 4.28 50.20 25.91
Bifidobacterium longum NCC2705, complete genome Host-associated 1727 60.24 4.37 60.39 4.28 44.35 18.20
Bacillus subtilis subsp. subtilis str. 168, complete genome 4105 43.31 4.61 43.78 4.34 47.78 25.51
Xanthomonas campestris pv. campestris, complete genome 4467 64.83 4.61 65.18 4.35 52.69 24.92
Bordetella petrii DSM 12804, complete genome Aquatic 5027 65.59 4.54 65.83 4.38 51.49 21.17
Desulfotomaculum reducens MI-1, complete genome Aquatic 3276 42.74 4.54 42.85 4.42 43.59 19.01
Escherichia coli HS, complete genome Host-associated 4378 50.69 5.39 51.54 4.42 42.72 18.21
Anaeromyxobacter dehalogenans 2CP-C, complete genome Terrestrial 4346 74.55 4.53 74.72 4.44 50.47 19.22
Chlorobium phaeobacteroides DSM 266, complete genome Aquatic 2650 48.61 4.51 48.83 4.45 41.22 16.79
Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete genome Multiple 2504 45.10 4.54 45.34 4.46 43.96 17.92
Cyanothece sp. ATCC 51142 chromosome linear, complete sequence Aquatic 449 38.39 4.71 38.75 4.46 0.00 0.00
Bacillus amyloliquefaciens FZB42, complete genome Terrestrial 3693 46.32 4.77 46.81 4.46 45.01 24.22
Escherichia coli ATCC 8739, complete genome Host-associated 4200 51.29 4.70 51.62 4.48 41.62 17.24
Escherichia coli str. K-12 substr. DH10B, complete genome Host-associated 4126 51.13 4.76 51.48 4.51 42.10 17.98
Buchnera aphidicola str. Cc (Cinara cedri), complete genome Host-associated 357 21.40 4.64 21.32 4.51 60.28 28.22
Candidatus Carsonella ruddii PV, complete genome Specialized 182 14.94 4.68 15.24 4.51 73.03 28.24
Desulfotalea psychrophila LSv54, complete genome Specialized 3116 46.83 4.73 47.17 4.52 44.01 18.30
Synechococcus sp. RCC307, complete genome Aquatic 2535 60.61 4.66 61.19 4.52 48.29 19.28
Gloeobacter violaceus PCC 7421, complete genome Terrestrial 4430 62.08 4.75 62.48 4.53 38.91 13.63
Nitrosococcus oceani ATCC 19707, complete genome Aquatic 2974 50.53 4.64 50.73 4.55 47.77 24.01
Geobacter bemidjiensis Bem, complete genome Terrestrial 4018 60.32 4.83 60.80 4.56 44.98 19.06
Chlorobium limicola DSM 245, complete genome Aquatic 2434 51.51 4.82 51.90 4.58 39.27 18.12
Pelodictyon phaeoclathratiforme BU-1, complete genome Multiple 2707 47.93 4.84 48.49 4.59 39.91 15.67
Acidovorax sp. JS42, complete genome Terrestrial 4007 66.47 4.71 66.68 4.60 57.39 24.12
Chloroherpeton thalassium ATCC 35110, complete genome Aquatic 2710 45.32 4.79 45.56 4.61 52.28 27.36
Chlorobium tepidum TLS, complete genome Specialized 2252 55.49 6.35 57.36 4.62 42.64 18.59
Chromohalobacter salexigens DSM 3043, complete genome Aquatic 3298 64.09 4.71 64.29 4.62 44.86 22.43
Escherichia coli str. K-12 substr. MG1655, complete genome Host-associated 4295 51.16 4.75 51.41 4.64 42.58 18.41
Akkermansia muciniphila ATCC BAA-835, complete genome Host-associated 2138 56.11 4.78 56.32 4.66 37.24 14.74
Nitrosomonas eutropha C91, complete genome Multiple 2444 48.91 4.81 49.06 4.66 43.79 18.54
Bifidobacterium adolescentis ATCC 15703, complete genome Host-associated 1631 59.51 4.77 59.66 4.67 48.33 21.18
Verminephrobacter eiseniae EF01-2, complete genome Host-associated 4908 65.13 4.82 65.34 4.70 55.60 22.39
Carboxydothermus hydrogenoformans Z-2901, complete genome Aquatic 2620 41.28 5.58 42.12 4.71 55.10 27.90
Escherichia coli SMS-3-5, complete genome Multiple 4743 50.50 5.49 51.30 4.73 43.85 19.10
Shewanella loihica PV-4, complete genome Multiple 3859 54.50 4.91 54.80 4.74 47.07 18.99
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome Multiple 1562 50.73 5.22 51.56 4.75 52.11 21.78
Desulfitobacterium hafniense Y51, complete genome Specialized 5060 47.73 4.89 47.92 4.76 45.26 17.78
Prochlorococcus marinus str. MIT 9313, complete genome Aquatic 2269 51.75 4.82 52.00 4.78 42.93 15.69
Escherichia coli SE11, complete genome Host-associated 4679 50.67 5.36 51.34 4.79 43.68 18.04
Rubrobacter xylanophilus DSM 9941, complete genome Specialized 3140 70.78 4.99 70.95 4.86 50.99 20.02
Synechococcus sp. WH 7803, complete genome Aquatic 2533 60.32 4.87 60.61 4.86 45.60 17.06
Geobacter lovleyi SZ, complete genome Multiple 3606 54.66 5.02 55.01 4.89 45.54 18.00
Acidiphilium cryptum JF-5, complete genome Multiple 3063 68.17 5.03 68.36 4.89 51.36 21.44
Pelobacter carbinolicus DSM 2380, complete genome Aquatic 3352 55.00 5.35 55.70 4.93 42.38 16.96
Acidithiobacillus ferrooxidans ATCC 53993, complete genome Specialized 2826 58.78 5.19 59.21 4.93 45.34 18.31
Synechocystis sp. PCC 6803, complete genome Aquatic 3172 48.22 4.98 48.35 4.93 39.50 19.51
Geobacter sulfurreducens PCA, complete genome Multiple 3446 60.71 5.38 61.23 4.94 45.08 17.84
Xylella fastidiosa M23, complete genome Host-associated 2161 52.03 5.42 52.53 4.95 0.00 0.00
Cyanothece sp. ATCC 51142 chromosome circular, complete sequence Aquatic 4762 37.82 5.20 38.33 4.97 0.00 0.00
Candidatus Desulforudis audaxviator MP104C, complete genome Specialized 2157 61.26 5.15 61.73 4.98 0.00 0.00
Delftia acidovorans SPH-1, complete genome Multiple 6040 66.62 5.21 66.88 4.99 54.41 24.46
Cellvibrio japonicus Ueda107, complete genome Terrestrial 3754 52.09 5.42 52.58 5.01 44.92 18.38
Gluconacetobacter diazotrophicus PAl 5, complete genome Host-associated 3778 66.22 5.80 66.95 5.03 53.17 21.89
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete genome Multiple 1721 50.44 5.59 51.28 5.05 53.10 22.62
Clostridium kluyveri DSM 555, complete genome Aquatic 3838 32.50 5.18 32.58 5.05 61.66 29.46
Hahella chejuensis KCTC 2396, complete genome Aquatic 6778 53.37 5.65 54.15 5.05 42.72 18.39
Deinococcus radiodurans R1 chromosome 2, complete sequence Terrestrial 368 66.98 5.06 66.99 5.10 44.63 24.13
Methylobacterium sp. 4-46, complete genome Multiple 6609 71.87 5.26 72.07 5.13 0.00 0.00
Chlorobium chlorochromatii CaD3, complete genome Aquatic 2002 44.16 5.32 44.58 5.18 49.65 21.15
Polaromonas naphthalenivorans CJ2, complete genome Aquatic 4084 62.80 5.38 63.08 5.23 46.97 18.52
Sulfurovum sp. NBC37-1, complete genome Specialized 2438 44.05 5.28 44.29 5.25 46.41 19.09
Heliobacterium modesticaldum Ice1, complete genome Multiple 3000 56.69 6.24 57.92 5.29 45.84 18.44
Sodalis glossinidius str. 'morsitans', complete genome Host-associated 2432 55.45 5.35 55.65 5.32 41.63 17.61
Chlorobaculum parvum NCIB 8327, complete genome Aquatic 2043 56.24 5.58 56.67 5.34 41.72 18.03
Synechococcus sp. CC9311, complete genome Aquatic 2892 52.51 5.59 53.41 5.35 45.43 17.42
Syntrophus aciditrophicus SB, complete genome Multiple 3168 50.97 5.94 51.97 5.39 45.22 19.74
Geobacillus thermodenitrificans NG80-2, complete genome Specialized 3392 49.23 5.50 49.57 5.43 53.01 30.21
Klebsiella pneumoniae 342, complete genome Host-associated 5425 57.01 6.61 58.14 5.47 44.44 18.04
Lactobacillus fermentum IFO 3956, complete genome Multiple 1843 52.54 5.45 52.74 5.50 47.57 23.95
Erwinia tasmaniensis, complete genome Host-associated 3427 54.04 5.84 54.52 5.51 42.16 18.26
Synechococcus sp. CC9902, complete genome Aquatic 2307 54.52 5.62 54.85 5.58 42.88 17.16
Prochlorococcus marinus str. MIT 9303, complete genome Aquatic 2997 50.51 5.74 51.48 5.58 50.84 20.02
Geobacter uraniireducens Rf4, complete genome Multiple 4357 54.31 5.82 54.71 5.69 46.01 19.50
Geobacter metallireducens GS-15, complete genome Aquatic 3519 59.54 5.81 59.83 5.72 49.34 20.24
Candidatus Desulfococcus oleovorans Hxd3, complete genome Aquatic 3265 56.47 5.93 56.84 5.74 43.29 18.15
Geobacillus kaustophilus HTA426, complete genome Aquatic 3498 52.20 5.97 52.70 5.79 54.11 29.13
Pelobacter propionicus DSM 2379, complete genome Multiple 3576 58.84 6.26 59.38 5.96 47.34 17.08
Moorella thermoacetica ATCC 39073, complete genome Aquatic 2465 56.01 6.30 56.47 6.10 42.63 16.07
Pelotomaculum thermopropionicum SI, complete genome Specialized 2920 53.79 6.39 54.31 6.11 45.71 18.37
Synechococcus sp. CC9605, complete genome Aquatic 2645 59.39 6.29 59.95 6.13 50.34 19.06
Synechococcus sp. WH 8102, complete genome Aquatic 2519 60.02 6.10 60.30 6.23 51.99 19.07


Archaea

Organism Habitat No. of protein coding ORFs %G+C Mean (all ORFs) %G+C S.D. (all ORFs) %G+C Mean 
(ORFs >300bp)		 %G+C S.D.
(ORFs >300bp) 		 Genome Dinucleotide Bias Mean Genome Dinucleotide Bias S.D. Graphical analysis
Nanoarchaeum equitans Kin4-M, complete genome Host-associated 536 31.10 2.97 31.00 2.81 43.98 16.93
Candidatus Korarchaeum cryptofilum OPF8, complete genome 1602 49.45 2.95 49.46 2.89 0.00 0.00
Methanosaeta thermophila PT, complete genome 1696 54.56 3.23 54.70 3.12 42.42 19.93
Caldivirga maquilingensis IC-167, complete genome Specialized 1963 43.56 3.33 43.66 3.16 40.16 17.38
Methanocaldococcus jannaschii DSM 2661 extrachromosomal, complete genome Aquatic 45 29.26 3.43 29.30 3.26 43.29 16.22
Staphylothermus marinus F1, complete genome Specialized 1570 35.91 3.41 35.86 3.27 44.56 16.00
Methanocaldococcus jannaschii DSM 2661 extrachromosomal, complete genome Aquatic 12 28.48 3.24 28.27 3.29 28.02 4.95
Pyrococcus horikoshii OT3, complete genome Aquatic 1955 41.92 3.59 41.98 3.34 45.28 20.97
Thermoplasma volcanium GSS1, complete genome Specialized 1499 40.87 3.44 40.96 3.34 41.84 19.35
Methanobrevibacter smithii ATCC 35061, complete genome Multiple 1793 31.84 3.62 32.10 3.35 52.05 20.68
Sulfolobus acidocaldarius DSM 639, complete genome Specialized 2223 37.01 3.55 37.14 3.36 47.07 20.59
Nitrosopumilus maritimus SCM1, complete genome Aquatic 1795 34.31 3.47 34.32 3.38 49.40 21.60
Methanosphaera stadtmanae DSM 3091, complete genome Host-associated 1534 29.00 3.63 29.14 3.44 55.34 25.25
Pyrococcus abyssi GE5, complete genome Aquatic 1896 44.82 3.66 44.93 3.47 41.77 18.00
Pyrococcus furiosus DSM 3638, complete genome Aquatic 2125 40.88 3.74 40.89 3.52 44.86 18.65
Haloquadratum walsbyi DSM 16790, complete genome Aquatic 2610 48.79 3.84 48.72 3.53 49.29 26.28
Methanococcus maripaludis S2, complete genome Aquatic 1722 33.73 3.61 33.79 3.57 51.64 22.15
Haloarcula marismortui ATCC 43049 chromosome II, complete sequence Aquatic 281 57.96 3.96 58.50 3.57 45.39 19.21
Natronomonas pharaonis DSM 2160, complete genome Aquatic 2661 63.78 3.85 64.10 3.64 43.06 16.95
Methanocaldococcus jannaschii DSM 2661, complete genome Aquatic 1729 31.69 3.75 31.71 3.68 49.10 22.20
Methanococcus maripaludis C7, complete genome Aquatic 1788 33.95 3.74 34.02 3.71 53.24 23.12
Archaeoglobus fulgidus DSM 4304, complete genome Aquatic 2420 48.73 3.95 49.06 3.71 44.20 16.59
Methanococcus maripaludis C6, complete genome Aquatic 1826 33.95 3.79 34.06 3.71 55.14 24.12
Methanococcus maripaludis C5, complete genome Aquatic 1813 33.65 3.74 33.71 3.72 53.46 21.76
Methanococcus aeolicus Nankai-3, complete genome Aquatic 1490 31.15 3.81 31.17 3.74 51.50 24.35
Ignicoccus hospitalis KIN4/I, complete genome Aquatic 1434 56.26 4.01 56.42 3.81 43.59 16.42
Methanococcus vannielii SB, complete genome Aquatic 1678 32.06 3.89 32.08 3.82 49.90 23.67
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Aquatic 3131 62.75 4.09 63.17 3.87 41.54 18.06
Methanothermobacter thermautotrophicus str. Delta H, complete genome Specialized 1873 49.85 4.36 50.40 3.91 45.76 21.32
Metallosphaera sedula DSM 5348, complete genome Specialized 2256 46.47 4.15 46.74 3.96 42.23 17.87
Sulfolobus tokodaii str. 7, complete genome Specialized 2825 33.39 4.35 33.30 3.96 53.59 22.91
Thermoplasma acidophilum DSM 1728, complete genome Specialized 1482 46.71 4.01 46.88 3.97 42.33 17.51
Thermococcus kodakarensis KOD1, complete genome Specialized 2306 52.39 4.28 52.56 4.15 46.55 20.77
Picrophilus torridus DSM 9790, complete genome Specialized 1535 36.84 4.42 36.82 4.24 43.50 19.27
Sulfolobus solfataricus P2, complete genome Specialized 2977 36.39 4.50 36.33 4.43 49.65 20.26
Methanococcoides burtonii DSM 6242, complete genome Aquatic 2273 41.89 4.51 42.04 4.49 42.17 16.98
Hyperthermus butylicus DSM 5456, complete genome Aquatic 1602 53.72 4.53 53.84 4.52 40.08 15.02
Methanopyrus kandleri AV19, complete genome Specialized 1687 60.82 4.58 60.94 4.55 46.85 20.02
Methanocorpusculum labreanum Z, complete genome Aquatic 1739 50.85 4.60 51.01 4.63 50.90 22.87
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Multiple 3606 41.74 4.78 41.93 4.71 48.22 19.92
Pyrobaculum aerophilum str. IM2, complete genome Aquatic 2605 51.51 5.01 51.72 4.71 45.22 17.91
Methanosarcina mazei Go1, complete genome Multiple 3370 43.57 4.98 43.91 4.73 45.63 19.92
Candidatus Methanoregula boonei 6A8, complete genome Terrestrial 2450 55.15 4.87 55.46 4.80 46.06 17.41
Thermoproteus neutrophilus V24Sta, complete genome Specialized 1966 60.00 4.93 60.31 4.82 0.00 0.00
Halobacterium sp. NRC-1, complete genome Specialized 2075 67.88 5.16 68.47 4.85 50.26 22.05
Halobacterium salinarum R1, complete genome Specialized 2110 67.93 5.17 68.55 4.86 0.00 0.00
Methanospirillum hungatei JF-1, complete genome Multiple 3139 45.77 5.02 45.98 4.93 44.39 19.11
Methanoculleus marisnigri JR1, complete genome Aquatic 2489 62.37 5.33 62.89 5.01 50.54 21.62
Pyrobaculum arsenaticum DSM 13514, complete genome Aquatic 2299 55.13 5.40 55.45 5.16 43.45 15.95
Uncultured methanogenic archaeon RC-I, complete genome Host-associated 3085 55.81 5.27 56.11 5.17 45.78 18.45
Pyrobaculum calidifontis JCM 11548, complete genome Specialized 2149 57.17 5.24 57.45 5.18 44.15 16.09
Thermofilum pendens Hrk 5, complete genome Specialized 1824 57.76 5.29 58.00 5.20 48.60 19.08
Aeropyrum pernix K1, complete genome Specialized 1700 56.58 5.58 56.82 5.49 46.20 18.37
Methanosarcina acetivorans C2A, complete genome Aquatic 4540 44.25 5.60 44.61 5.49 51.23 21.77
Pyrobaculum islandicum DSM 4184, complete genome Specialized 1978 48.97 7.27 49.19 7.20 45.85 18.51

Last Updated: Dec-04-2008 (Note: All organisms results have been recomputed based on the new NCBI genome files)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.