IslandPath Analysis: Tropheryma whipplei TW08/27



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.60   STD DEV: 3.15
Tropheryma whipplei TW08/27, complete genome - 1..925938
783 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.83	-2	1..1437	+	478	28572176	dnaA	TW001	-	chromosomal replication initiator protein DnaA
2	 37.74	-2	1767..2900	+	377	28572177	dnaN	TW002	-	DNA polymerase III subunit beta
3	 38.92	-2	2890..3981	+	363	28572178	recF	TW003	-	DNA replication and repair protein recF
4	 39.77	-2	4011..4445	+	144	28572179	-	TW004	-	hypothetical protein
5	 47.59	0	4485..6434	+	649	28572180	gyrB	TW005	-	DNA gyrase subunit B
6	 49.27	0	6438..8897	+	819	28572181	gyrA1	TW006	-	DNA gyrase subunit A
7	 45.14	0	8894..9274	+	126	28572182	-	TW007	-	integral membrane protein
8	 49.21	0	9640..10332	-	230	28572183	-	TW008	-	hypothetical protein
9	 50.48	+1	10472..11095	+	207	28572184	-	TW009	-	integral membrane protein
10	 50.48	+1	11133..11342	-	69	28572185	-	TW010	-	putative septation inhibitor protein
11	 50.70	+1	11399..12037	+	212	28572186	-	TW011	-	glutamine amidotransferase
12	 49.56	0	12143..12715	+	190	28572187	-	TW012	-	hypothetical protein
13	 49.32	0	12752..13627	+	291	28572188	-	TW013	-	integral membrane heat shock protease
14	 48.12	0	13628..13999	+	123	28572189	-	TW014	-	integral membrane protein
15	 51.17	+1	14121..15404	+	427	28572190	-	TW015	-	WiSP family protein
16	 48.53	0	15432..16280	+	282	28572191	dkgA	TW016	-	2,5-diketo-D-gluconic acid reductase A
17	 48.76	0	16396..18048	-	550	28572192	-	TW017	-	phosphomannomutase
18	 50.12	+1	18061..18894	-	277	28572193	punA	TW018	-	purine nucleoside phosphorylase
19	 48.71	0	18975..20372	+	465	28572194	-	TW019	-	flavoprotein disulfide reductase
20	 46.11	0	20441..22216	-	591	28572195	-	TW020	-	acyl-CoA carboxylase complex A subunit
21	 47.86	0	22333..22752	-	139	28572196	-	TW021	-	hypothetical protein
22	 44.98	0	22844..23152	+	102	28572197	-	TW022	-	hypothetical protein
23	 45.45	0	23168..23563	+	131	28572198	-	TW023	-	integral membrane protein
24	 44.93	0	23661..23798	+	45	28572199	-	TW024	-	integral membrane protein
25	 46.64	0	24099..25676	-	525	28572200	pccB	TW025	-	propionyl-CoA carboxylase beta chain
26	 44.18	0	25738..26484	+	248	28572201	-	TW026	-	protein ligase
27	 46.85	0	26537..26869	-	110	28572202	-	TW027	-	integral membrane protein
28	 48.96	0	26979..28232	+	417	28572203	purK	TW028	-	phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
29	 48.07	0	28311..28853	+	180	28572204	purE	TW029	-	phosphoribosylaminoimidazole carboxylase catalytic subunit PurE
30	 46.37	0	29078..29476	-	132	28572205	-	TW030	-	integral membrane protein
31	 48.84	0	29804..30667	-	287	28572206	-	TW032	-	polysaccharide biosynthesis protein
32	 45.63	0	30664..31647	-	327	28572207	-	TW033	-	dehydratase
33	 50.16	+1	31892..32515	+	207	28572208	-	TW035	-	epimerase
34	 45.05	0	32571..33449	+	292	28572209	-	TW036	-	nucleotidyl transferase
35	 45.11	0	33457..34305	-	282	28572210	-	TW037	-	glycosyl transferase
36	 42.26	-1	34302..35108	-	268	28572211	-	TW038	-	ABC transport ATP-binding subunit
37	 43.76	0	35160..36041	-	293	28572212	-	TW039	-	ABC transport integral membrane subunit
38	 45.99	0	36116..37087	+	323	28572213	-	TW040	-	glycosyl transferase
39	 42.02	-1	37195..37551	-	118	28572214	-	TW041	-	integral membrane protein
40	 48.42	0	37548..38276	-	242	28572215	-	TW042	-	glycosyl transferase
41	 49.67	0	38634..40475	+	613	28572216	-	TW043	-	large integral membrane protein
42	 50.00	+1	40712..40825	+	37	28572217	-	TW044	-	hypothetical protein
43	 44.44	0	40845..40934	+	29	28572218	-	TW045	-	small membrane protein
44	 47.25	0	41326..41835	+	169	28572219	-	TW046	-	integral membrane protein
45	 48.37	0	42189..42587	+	132	28572220	-	TW048	-	secreted protein
46	 47.12	0	42584..42982	+	132	28572221	-	TW049	-	integral membrane protein
47	 42.31	-1	43109..43420	+	103	28572222	-	TW051	-	integral membrane protein
48	 47.45	0	43784..44215	+	143	28572223	-	TW052	-	secreted protein
49	 46.41	0	44219..44608	+	129	28572224	-	TW053	-	integral membrane protein
50	 44.76	0	44860..46251	-	463	28572225	-	TW054	-	two component system sensor kinase
51	 47.66	0	46318..47001	-	227	28572226	-	TW055	-	two component system response regulator
52	 50.53	+1	47266..47643	+	125	28572227	-	TW057	-	cold shock protein B
53	 50.44	+1	47741..47968	+	75	28572228	-	TW058	-	hypothetical protein
54	 44.19	0	47971..48753	+	260	28572229	-	TW059	-	sporulation/chromosome partition protein
55	 46.35	0	48827..49963	+	378	28572230	-	TW060	-	prephenate dehydrogenase
56	 48.37	0	49945..52005	+	686	28572231	-	TW061	-	bifunctional cytidylate kinase/GTP-binding protein
57	 43.82	0	52002..53279	-	425	28572232	-	TW062	-	chorismate binding enzyme
58	 49.31	0	53375..54094	+	239	28572233	-	TW063	-	ubiquinone/menaquinone methyltransferase
59	 48.77	0	54106..55122	+	338	28572234	-	TW064	-	polyprenyl diphosphate synthase
60	 48.14	0	55141..56484	+	447	28572235	-	TW065	-	ferredoxin/ferredoxin-NADP reductase
61	 47.43	0	56824..57795	-	323	28572236	-	TW066	-	iron-siderophore binding lipoprotein
62	 47.19	0	57921..58916	-	331	28572237	-	TW067	-	iron-siderophore binding lipoprotein
63	 42.11	-1	59134..59919	-	261	28572238	-	TW068	-	iron-siderophore uptake system ATP-binding component
64	 45.51	0	59903..60937	-	344	28572239	-	TW069	-	iron-siderophore uptake system integral membrane component
65	 47.62	0	60943..61908	-	321	28572240	-	TW070	-	iron-siderophore uptake system integral membrane component
66	 40.82	-1	62354..62647	+	97	28572241	-	TW071	-	regulator
67	 45.48	0	62943..64580	-	545	28572242	lysK	TW072	-	lysyl-tRNA synthetase
68	 46.02	0	64669..65535	+	288	28572243	panC	TW073	-	pantoate--beta-alanine ligase
69	 43.62	0	65832..67328	+	498	28572244	-	TW074	-	phospholipase
70	 49.46	0	67380..69902	+	840	28572245	-	TW075	-	Clp-family ATP-binding protease/regulator
71	 49.05	0	70637..72220	+	527	28572246	menD	TW078	-	menaquinone biosynthesis protein MenD
72	 44.32	0	72230..72775	+	181	28572247	-	TW079	-	secreted protein
73	 47.26	0	72796..73707	+	303	28572248	menA	TW080	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
74	 50.46	+1	73945..77412	+	1155	28572249	rpoB	TW081	-	DNA-directed RNA polymerase subunit beta
75	 49.01	0	77472..81299	+	1275	28572250	rpoC	TW082	-	DNA-directed RNA polymerase subunit beta'
76	 47.21	0	81523..82884	-	453	28572251	-	TW083	-	hydrolase
77	 52.34	+1	82958..83341	+	127	28572252	groES	TW084	-	co-chaperonin GroES
78	 50.95	+1	83392..84867	+	491	28572253	guaB1	TW085	-	inosine-5'-monophosphate dehydrogenase
79	 50.18	+1	84872..85993	+	373	28572254	guaB2	TW086	-	inositol-5-monophosphate dehydrogenase
80	 47.06	0	85986..86699	+	237	28572255	-	TW087	-	hypothetical protein
81	 45.66	0	86765..87202	+	145	28572256	-	TW088	-	hypothetical protein
82	 46.36	0	87199..88710	+	503	28572257	guaA	TW089	-	bifunctional GMP synthase/glutamine amidotransferase protein
83	 44.80	0	88815..91046	+	743	28572258	-	TW090	-	ATP-dependent DNA helicase
84	 42.76	-1	91313..92797	+	494	28572259	-	TW092	-	integral membrane protein
85	 44.76	0	92799..93437	+	212	28572260	purN	TW093	-	phosphoribosylglycinamide formyltransferase
86	 47.08	0	93477..95105	+	542	28572261	purH	TW094	-	bifunctional purine biosynthesis protein PurH
87	 42.98	-1	95180..95521	-	113	28572262	-	TW095	-	integral membrane protein
88	 42.69	-1	95602..96681	+	359	28572263	-	TW096	-	integral membrane protein
89	 44.44	0	96582..97733	-	383	28572264	truB	TW097	-	tRNA pseudouridine synthase B
90	 43.91	0	97781..98905	+	374	28572265	-	TW098	-	metalloprotease
91	 46.79	0	98907..100013	-	368	28572266	dxr	TW099	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
92	 45.42	0	100065..100817	+	250	28572267	-	TW100	-	hypothetical protein
93	 45.42	0	100840..102411	-	523	28572268	-	TW101	-	hypothetical protein
94	 46.21	0	102673..102936	+	87	28572269	-	TW103	-	hypothetical protein
95	 43.10	-1	102921..103964	+	347	28572270	-	TW104	-	integral membrane protein
96	 43.80	0	103993..104355	+	120	28572271	-	TW105	-	integral membrane protein
97	 44.86	0	104352..105071	+	239	28572272	-	TW106	-	ABC transport ATP-binding subunit
98	 36.13	-2	105068..105424	+	118	28572273	-	TW107	-	integral membrane protein
99	 47.90	0	107600..108649	-	349	28572274	-	TW108	-	DNA recombinase
100	 48.93	0	110016..110624	-	202	28572275	-	TW109	-	NUDIX hydrolase
46.60	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.