IslandPath Analysis: Sulfolobus tokodaii str. 7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.39   STD DEV: 4.35
Sulfolobus tokodaii str. 7, complete genome - 1..2694756
2825 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.68	0	526..1632	-	368	15920164	-	ST0001	-	hypothetical protein
2	 36.08	0	1883..2173	-	96	15920165	-	STS001	-	hypothetical protein
3	 34.19	0	2263..2496	+	77	15920166	-	STS002	-	hypothetical protein
4	 32.96	0	2268..2537	-	89	15920167	-	STS003	-	hypothetical protein
5	 35.19	0	2722..2937	-	71	15920168	-	STS004	-	hypothetical protein
6	 36.05	0	3144..3401	+	85	15920169	-	STS005	-	hypothetical protein
7	 37.25	0	3247..3399	-	50	15920170	-	STS006	-	hypothetical protein
8	 38.33	+1	3744..5483	+	579	15920171	-	ST0002	-	prolyl endopeptidase
9	 38.67	+1	5970..8819	-	949	15920172	-	ST0003	-	hypothetical protein
10	 35.12	0	9382..9549	+	55	15920173	-	STS007	-	cytochrome b
11	 31.07	0	9819..10127	-	102	15920174	-	ST0004	-	hypothetical protein
12	 36.28	0	10108..10650	-	180	15920175	-	ST0005	-	hypothetical protein
13	 36.12	0	10825..11469	-	214	15920176	-	ST0006	-	hypothetical protein
14	 31.76	0	12210..12716	+	168	15920177	-	ST0007	-	hypothetical protein
15	 35.12	0	12718..13446	+	242	15920178	-	ST0008	-	hypothetical protein
16	 37.50	0	13440..14279	+	279	15920179	-	ST0009	-	hypothetical protein
17	 35.37	0	14027..14419	-	130	15920180	-	ST0010	-	hypothetical protein
18	 37.74	0	14251..15045	+	264	15920181	-	ST0011	-	hypothetical protein
19	 35.32	0	15202..17868	+	888	15920182	-	ST0012	-	hypothetical protein
20	 35.46	0	17868..18479	+	203	15920183	-	ST0013	-	hypothetical protein
21	 35.76	0	18472..19419	+	315	15920184	-	ST0014	-	hypothetical protein
22	 38.07	+1	19416..20111	+	231	15920185	-	ST0015	-	hypothetical protein
23	 34.51	0	20860..21369	+	169	15920186	-	ST0016	-	hypothetical protein
24	 34.62	0	21509..21742	+	77	15920187	-	STS008	-	hypothetical protein
25	 34.62	0	21769..22158	+	129	15920188	-	ST0017	-	hypothetical protein
26	 35.66	0	21861..22247	-	128	15920189	-	ST0018	-	hypothetical protein
27	 35.57	0	22408..23790	+	460	15920190	-	ST0019	-	hypothetical protein
28	 39.04	+1	24046..25131	-	361	15920191	-	ST0020	-	hypothetical protein
29	 38.27	+1	27369..27692	+	107	15920192	-	ST0021	-	hypothetical protein
30	 37.37	0	29207..29404	-	65	15920193	-	STS009	-	hypothetical protein
31	 39.64	+1	31149..31703	+	184	15920194	-	ST0022	-	hypothetical protein
32	 36.97	0	31700..32386	-	228	15920195	-	ST0023	-	hypothetical protein
33	 34.94	0	35879..36190	-	103	15920196	-	ST0024	-	hypothetical protein
34	 33.91	0	37869..38042	-	57	15920197	-	STS010	-	hypothetical protein
35	 39.05	+1	39953..40267	-	104	15920198	-	ST0025	-	hypothetical protein
36	 39.46	+1	40239..41135	-	298	15920199	-	ST0026	-	hypothetical protein
37	 39.33	+1	41179..42045	+	288	15920200	-	ST0027	-	hypothetical protein
38	 35.42	0	42077..42556	+	159	15920201	-	ST0028	-	hypothetical protein
39	 37.51	0	42549..43505	+	318	15920202	-	ST0029	-	hypothetical protein
40	 38.31	+1	43502..44284	+	260	15920203	-	ST0030	-	hypothetical protein
41	 33.63	0	44272..45282	+	336	15920204	-	ST0031	-	hypothetical protein
42	 33.33	0	45312..46946	+	544	15920205	-	ST0032	-	hypothetical protein
43	 32.39	0	46943..47581	+	212	15920206	-	ST0033	-	hypothetical protein
44	 36.59	0	47578..48345	+	255	15920207	-	ST0034	-	hypothetical protein
45	 34.26	0	49463..50755	+	430	15920208	-	ST0035	-	hypothetical protein
46	 32.82	0	51475..51861	-	128	15920209	-	ST0036	-	hypothetical protein
47	 34.90	0	51854..52108	-	84	15920210	-	STS011	-	hypothetical protein
48	 34.60	0	52272..52745	+	157	15920211	-	ST0037	-	hypothetical protein
49	 39.19	+1	52708..52980	-	90	15920212	-	STS012	-	hypothetical protein
50	 36.72	0	53500..53676	+	58	15920213	-	STS013	-	hypothetical protein
51	 30.50	0	53904..54185	+	93	15920214	-	STS014	-	hypothetical protein
52	 39.07	+1	56081..57004	-	307	15920215	-	ST0038	-	alcohol dehydrogenase
53	 33.94	0	56943..57107	-	54	15920216	-	STS015	-	alcohol dehydrogenase
54	 33.99	0	57094..57552	-	152	15920217	-	ST0040	-	hypothetical protein
55	 44.25	+2	57914..58957	-	347	15920218	-	ST0041	-	hypothetical protein
56	 42.20	+2	58899..59225	-	108	15920219	-	ST0042	-	hypothetical protein
57	 42.82	+2	59212..59622	-	136	15920220	-	ST0043	-	transposase
58	 38.38	+1	59664..60377	-	237	15920221	-	ST0044	-	hypothetical protein
59	 33.33	0	61168..61812	-	214	15920222	-	ST0045	-	dehydrogenase
60	 39.61	+1	61878..62864	-	328	15920223	-	ST0046	-	hypothetical protein
61	 34.34	0	62961..64643	-	560	15920224	-	ST0047	-	dehydrogenase
62	 34.90	0	64646..65410	-	254	15920225	-	ST0048	-	enoyl-CoA hydratase
63	 32.22	0	65055..65414	+	119	15920226	-	ST0049	-	hypothetical protein
64	 35.23	0	65478..67166	-	562	15920227	-	ST0050	-	acetyl-CoA synthetase
65	 27.92	-1	67643..68326	+	227	15920228	-	ST0051	-	hypothetical protein
66	 36.88	0	68421..69857	-	478	15920229	-	ST0052	-	hypothetical protein
67	 34.40	0	69875..70909	-	344	15920230	-	ST0053	-	alcohol dehydrogenase
68	 36.79	0	70906..72234	-	442	15920231	-	ST0054	-	transporter
69	 27.22	-1	72942..73121	-	59	15920232	-	STS016	-	NADH-ubiquinone oxidoreductase subunit 4L
70	 40.84	+1	73168..74220	+	350	15920233	-	ST0055	-	hypothetical protein
71	 26.67	-1	74316..74540	+	74	15920234	-	STS017	-	hypothetical protein
72	 33.65	0	75466..77064	-	532	15920235	-	ST0056	-	magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 66 kd subunit
73	 31.40	0	77331..78260	+	309	15920236	-	ST0057	-	hypothetical protein
74	 29.08	0	78556..79119	-	187	15920237	-	ST0058	-	hypothetical protein
75	 39.74	+1	79079..80467	-	462	15920238	-	ST0059	-	selenium-binding protein
76	 39.37	+1	79708..80022	+	104	15920239	-	ST0060	-	hypothetical protein
77	 34.53	0	80975..81391	+	138	15920240	-	ST0061	-	hypothetical protein
78	 35.68	0	81399..82931	-	510	15920241	-	ST0062	-	fatty acid--CoA ligase
79	 35.24	0	82984..84396	-	470	15920242	-	ST0063	-	hypothetical protein
80	 38.17	+1	84663..86069	+	468	15920243	-	ST0064	-	aldehyde dehydrogenase
81	 37.77	+1	86414..87811	-	465	15920244	-	ST0065	-	transporter
82	 34.27	0	88099..89268	+	389	15920245	-	ST0066	-	acyl-CoA dehydrogenase
83	 33.87	0	89412..90530	-	372	15920246	-	ST0067	-	alpha-methylacyl-CoA racemase
84	 36.55	0	90543..91040	-	165	15920247	-	ST0068	-	hypothetical protein
85	 35.58	0	91339..93297	+	652	15920248	-	ST0069	-	3-hydroxybutyryl-CoA dehydrogenase
86	 35.56	0	93329..94090	+	253	15920249	fabG	ST0070	-	3-ketoacyl-(acyl-carrier-protein) reductase
87	 34.10	0	94092..95003	-	303	15920250	-	ST0071	-	esterase
88	 31.79	0	95192..95776	+	194	15920251	-	ST0072	-	hypothetical protein
89	 38.74	+1	96111..96683	-	190	15920252	-	ST0073	-	hypothetical protein
90	 29.55	0	97074..97469	+	131	15920253	-	ST0074	-	hypothetical protein
91	 34.72	0	97632..98567	+	311	15920254	-	ST0075	-	NAD-dependent alcohol dehydrogenase
92	 39.40	+1	98607..99809	+	400	15920255	-	ST0076	-	acyl-CoA dehydrogenase
93	 35.38	0	99862..101472	+	536	15920256	-	ST0077	-	fatty acid--CoA ligase
94	 34.31	0	101106..101513	-	135	15920257	-	ST0078	-	hypothetical protein
95	 40.03	+1	101475..102668	+	397	15920258	-	ST0079	-	acetyl-CoA acetyltransferase
96	 31.83	0	102665..103195	+	176	15920259	-	ST0080	-	hypothetical protein
97	 35.69	0	103564..106485	+	973	15920260	-	ST0081	-	formate dehydrogenase subunit alpha
98	 32.49	0	106449..106805	+	118	15920261	-	ST0083	-	hypothetical protein
99	 35.16	0	106786..107553	+	255	15920262	-	ST0084	-	formate dehydrogenase subunit FdhD
100	 31.84	0	107596..108396	+	266	15920263	-	ST0085	-	hypothetical protein
33.39	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.