IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.95	0	318..1673	+	451	16802049	dnaA	lmo0001	-	chromosomal replication initiation protein
2	 34.38	-1	1867..3012	+	381	16802050	dnaN	lmo0002	-	DNA polymerase III subunit beta
3	 39.43	0	3121..4464	+	447	16802051	-	lmo0003	-	hypothetical protein
4	 39.64	0	4644..4865	+	73	16802052	-	lmo0004	-	hypothetical protein
5	 39.71	0	4869..5981	+	370	16802053	recF	lmo0005	-	recombination protein F
6	 40.24	0	6030..7970	+	646	16802054	gyrB	lmo0006	-	DNA gyrase subunit B
7	 39.90	0	8065..10593	+	842	16802055	gyrA	lmo0007	-	DNA gyrase subunit A
8	 38.94	0	10728..12242	+	504	16802056	-	lmo0008	-	hypothetical protein
9	 34.10	-1	12258..12776	+	172	16802057	-	lmo0009	-	hypothetical protein
10	 38.70	0	12918..13886	+	322	16802058	-	lmo0010	-	hypothetical protein
11	 40.02	0	13843..14814	+	323	16802059	-	lmo0011	-	hypothetical protein
12	 39.54	0	14795..15874	+	359	16802060	-	lmo0012	-	hypothetical protein
13	 38.39	0	16219..17325	+	368	16802061	qoxA	lmo0013	-	AA3-600 quinol oxidase subunit II
14	 40.71	0	17344..19323	+	659	16802062	qoxB	lmo0014	-	AA3-600 quinol oxidase subunit I
15	 38.40	0	19311..19922	+	203	16802063	qoxC	lmo0015	-	AA3-600 quinol oxidase subunit III
16	 37.84	0	19924..20256	+	110	16802064	qoxD	lmo0016	-	hypothetical protein
17	 35.84	0	20308..21426	-	372	16802065	-	lmo0017	-	hypothetical protein
18	 39.61	0	21652..23085	+	477	16802066	-	lmo0018	-	beta-glucosidase
19	 38.93	0	23132..23953	-	273	16802067	-	lmo0019	-	hypothetical protein
20	 31.85	-1	24194..24934	+	246	16802068	-	lmo0020	-	hypothetical protein
21	 39.80	0	24950..25351	+	133	16802069	-	lmo0021	-	hypothetical protein
22	 37.22	0	25351..25839	+	162	16802070	-	lmo0022	-	hypothetical protein
23	 41.67	+1	25862..26665	+	267	16802071	-	lmo0023	-	hypothetical protein
24	 38.77	0	26640..27467	+	275	16802072	-	lmo0024	-	hypothetical protein
25	 40.57	0	27495..28199	+	234	16802073	-	lmo0025	-	hypothetical protein
26	 38.63	0	28254..28895	+	213	16802074	-	lmo0026	-	hypothetical protein
27	 38.32	0	29100..31004	+	634	16802075	-	lmo0027	-	hypothetical protein
28	 36.42	0	31088..31963	+	291	16802076	-	lmo0028	-	hypothetical protein
29	 40.71	0	32197..32535	+	112	16802077	-	lmo0029	-	hypothetical protein
30	 36.42	0	32571..33380	-	269	16802078	-	lmo0030	-	hypothetical protein
31	 37.12	0	33397..34452	-	351	16802079	-	lmo0031	-	LacI family transcription regulator
32	 41.30	0	34654..35619	+	321	16802080	-	lmo0032	-	hypothetical protein
33	 40.99	0	35616..38018	+	800	16802081	-	lmo0033	-	hypothetical protein
34	 38.80	0	38031..39383	+	450	16802082	-	lmo0034	-	hypothetical protein
35	 38.77	0	39385..40470	+	361	16802083	-	lmo0035	-	hypothetical protein
36	 37.13	0	40705..41730	+	341	16802084	-	lmo0036	-	putrescine carbamoyltransferase
37	 37.09	0	41803..43188	+	461	16802085	-	lmo0037	-	hypothetical protein
38	 39.19	0	43175..44266	+	363	16802086	-	lmo0038	-	agmatine deiminase
39	 40.98	0	44282..45223	+	313	16802087	-	lmo0039	-	carbamate kinase
40	 39.01	0	45325..46434	+	369	16802088	-	lmo0040	-	agmatine deiminase
41	 33.08	-1	46451..47230	+	259	16802089	-	lmo0041	-	hypothetical protein
42	 33.48	-1	47335..47994	+	219	16802090	-	lmo0042	-	hypothetical protein
43	 38.44	0	48074..49306	+	410	16802091	-	lmo0043	-	arginine deiminase
44	 35.71	0	49585..49878	+	97	16802092	rpsF	lmo0044	-	30S ribosomal protein S6
45	 41.15	0	49934..50470	+	178	16802093	ssb	lmo0045	-	hypothetical protein
46	 39.58	0	50514..50753	+	79	16802094	rpsR	lmo0046	-	30S ribosomal protein S18
47	 32.03	-1	50907..51518	+	203	16802095	-	lmo0047	-	hypothetical protein
48	 35.61	0	51775..52389	+	204	16802096	-	lmo0048	-	putative accessory gene regulator protein
49	 29.01	-2	52373..52534	+	53	16802097	-	lmo0049	-	hypothetical protein
50	 32.10	-1	52630..53925	+	431	16802098	-	lmo0050	-	hypothetical protein
51	 35.25	0	53944..54672	+	242	16802099	-	lmo0051	-	hypothetical protein
52	 42.50	+1	54839..56812	+	657	16802100	-	lmo0052	-	hypothetical protein
53	 35.12	0	56815..57261	+	148	16802101	rplI	lmo0053	-	50S ribosomal protein L9
54	 42.79	+1	57286..58638	+	450	16802102	dnaC	lmo0054	-	replicative DNA helicase
55	 39.29	0	58897..60189	+	430	16802103	purA	lmo0055	-	adenylosuccinate synthetase
56	 38.10	0	60506..60799	+	97	16802104	-	lmo0056	-	hypothetical protein
57	 36.33	0	60948..64154	+	1068	16802105	-	lmo0057	-	hypothetical protein
58	 38.18	0	64144..64659	+	171	16802106	-	lmo0058	-	hypothetical protein
59	 33.33	-1	64677..64928	+	83	16802107	-	lmo0059	-	hypothetical protein
60	 35.42	0	64950..66146	+	398	16802108	-	lmo0060	-	hypothetical protein
61	 40.00	0	66160..70656	+	1498	16802109	-	lmo0061	-	hypothetical protein
62	 34.60	-1	70676..71071	+	131	16802110	-	lmo0062	-	hypothetical protein
63	 36.00	0	71064..71363	+	99	16802111	-	lmo0063	-	hypothetical protein
64	 35.33	0	71360..72061	+	233	16802112	-	lmo0064	-	hypothetical protein
65	 37.24	0	72062..72394	+	110	16802113	-	lmo0065	-	hypothetical protein
66	 41.98	+1	72408..74222	+	604	16802114	-	lmo0066	-	hypothetical protein
67	 32.53	-1	74239..75228	+	329	16802115	-	lmo0067	-	hypothetical protein
68	 32.10	-1	75342..75665	+	107	16802116	-	lmo0068	-	hypothetical protein
69	 37.07	0	75832..76125	+	97	16802117	-	lmo0069	-	hypothetical protein
70	 27.39	-2	76262..76984	+	240	16802118	-	lmo0070	-	hypothetical protein
71	 36.05	0	77149..77406	+	85	16802119	-	lmo0071	-	hypothetical protein
72	 34.80	0	77863..78066	+	67	16802120	-	lmo0072	-	hypothetical protein
73	 30.18	-2	78090..78374	+	94	16802121	-	lmo0073	-	hypothetical protein
74	 26.44	-2	78362..78811	+	149	16802122	-	lmo0074	-	hypothetical protein
75	 46.25	+2	79047..79820	+	257	16802123	-	lmo0075	-	hypothetical protein
76	 41.31	0	79817..80869	+	350	16802124	-	lmo0076	-	hypothetical protein
77	 38.03	0	80892..81530	-	212	16802125	-	lmo0077	-	hypothetical protein
78	 44.31	+1	81661..82617	+	318	16802126	-	lmo0078	-	hypothetical protein
79	 37.12	0	82959..84437	+	492	16802127	-	lmo0079	-	hypothetical protein
80	 32.83	-1	84451..84849	+	132	16802128	-	lmo0080	-	hypothetical protein
81	 28.52	-2	85025..85627	+	200	16802129	-	lmo0081	-	hypothetical protein
82	 31.80	-1	85902..86228	+	108	16802130	-	lmo0082	-	hypothetical protein
83	 40.65	0	86323..86691	-	122	16802131	-	lmo0083	-	hypothetical protein
84	 42.28	+1	86747..87730	-	327	16802132	-	lmo0084	-	hypothetical protein
85	 31.16	-2	88121..88810	+	229	16802133	-	lmo0085	-	hypothetical protein
86	 34.86	0	88888..94767	+	1959	16802134	-	lmo0086	-	hypothetical protein
87	 35.50	0	94764..97070	+	768	16802135	-	lmo0087	-	hypothetical protein
88	 42.39	+1	97127..97369	+	80	16802136	-	lmo0088	-	hypothetical protein
89	 34.98	0	97381..98412	+	343	16802137	-	lmo0089	-	hypothetical protein
90	 39.14	0	98409..99905	+	498	16802138	-	lmo0090	-	F0F1 ATP synthase subunit alpha
91	 38.16	0	99902..100771	+	289	16802139	-	lmo0091	-	hypothetical protein
92	 39.97	0	100772..102142	+	456	16802140	-	lmo0092	-	F0F1 ATP synthase subunit beta
93	 38.58	0	102155..102478	+	107	16802141	-	lmo0093	-	hypothetical protein
94	 34.94	0	102468..103028	+	186	16802142	-	lmo0094	-	hypothetical protein
95	 34.91	0	103204..103836	+	210	16802143	-	lmo0095	-	hypothetical protein
96	 40.37	0	104134..105099	+	321	16802144	-	lmo0096	-	hypothetical protein
97	 43.00	+1	105123..105929	+	268	16802145	-	lmo0097	-	hypothetical protein
98	 40.57	0	105951..106862	+	303	16802146	-	lmo0098	-	hypothetical protein
99	 38.46	0	106988..107377	+	129	16802147	-	lmo0099	-	hypothetical protein
100	 35.61	0	107499..107849	+	116	16802148	-	lmo0100	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.