IslandPath Analysis: Xanthomonas campestris pv. campestris str. ATCC 33913



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.33   STD DEV: 4.08
Xanthomonas campestris pv. campestris str. ATCC 33913, complete genome - 1..5076188
4181 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.91	0	42..1370	+	442	21229479	dnaA	XCC0001	-	chromosomal replication initiation protein
2	 64.58	0	1646..2746	+	366	21229480	dnaN	XCC0002	-	DNA polymerase III subunit beta
3	 65.49	0	3633..4739	+	368	21229481	recF	XCC0003	-	recombination protein F
4	 64.99	0	4853..7297	+	814	21229482	gyrB	XCC0004	-	DNA gyrase subunit B
5	 67.85	0	7359..8201	+	280	21229483	-	XCC0005	-	hypothetical protein
6	 65.92	0	8264..9070	+	268	21229484	-	XCC0006	-	hypothetical protein
7	 62.32	0	9209..10405	+	398	21229485	-	XCC0007	-	hypothetical protein
8	 63.69	0	10559..11230	+	223	21229486	tonB	XCC0008	-	TonB protein
9	 63.78	0	11315..12076	+	253	21229487	exbB	XCC0009	-	biopolymer transport ExbB protein
10	 60.28	-1	12123..12545	+	140	21229488	exbD1	XCC0010	-	biopolymer transport ExbD1 protein
11	 60.34	-1	12549..12959	+	136	21229489	exbD2	XCC0011	-	biopolymer transport ExbD2 protein
12	 67.32	0	14113..14883	-	256	21229490	pdxJ	XCC0012	-	pyridoxal phosphate biosynthetic protein PdxJ
13	 67.78	0	14891..15160	-	89	21229491	-	XCC0013	-	hypothetical protein
14	 66.26	0	15235..16695	-	486	21229492	cls	XCC0014	-	cardiolipin synthetase
15	 68.68	0	16981..18075	+	364	21229493	-	XCC0015	-	hypothetical protein
16	 65.95	0	18170..18871	-	233	77747724	-	XCC0016	-	hypothetical protein
17	 66.82	0	19513..20853	-	446	21229495	ompP1	XCC0017	-	outer membrane protein
18	 67.68	0	21074..21766	+	230	21229496	-	XCC0018	-	hypothetical protein
19	 61.37	0	21795..22115	+	106	21229497	-	XCC0019	-	hypothetical protein
20	 69.30	0	22115..23101	+	328	21229498	serA	XCC0020	-	D-3-phosphoglycerate dehydrogenase
21	 67.87	0	24036..25616	-	526	21229499	ctp	XCC0021	-	carboxyl-terminal protease
22	 68.72	0	25781..26998	-	405	21229500	-	XCC0022	-	hypothetical protein
23	 65.30	0	27169..27825	+	218	21229501	-	XCC0023	-	hypothetical protein
24	 68.40	0	27884..29668	+	594	21229502	-	XCC0024	-	hypothetical protein
25	 62.04	0	30029..30460	-	143	21229503	-	XCC0025	-	hypothetical protein
26	 59.90	-1	30893..31942	-	349	21229504	egl	XCC0026	-	cellulase
27	 61.25	0	32351..33403	-	350	21229505	egl	XCC0027	-	cellulase
28	 63.38	0	34034..35098	-	354	21229506	egl	XCC0028	-	cellulase
29	 64.21	0	35412..36470	+	352	21229507	yahK	XCC0029	-	alcohol dehydrogenase
30	 50.49	-2	37451..37957	-	168	21229508	-	XCC0030	-	hypothetical protein
31	 68.49	0	38002..39483	-	493	21229509	gltD	XCC0031	-	glutamate synthase subunit beta
32	 67.18	0	39605..44077	-	1490	21229510	gltB	XCC0032	-	glutamate synthase subunit alpha
33	 65.48	0	44280..44702	-	140	21229511	-	XCC0033	-	hypothetical protein
34	 66.75	0	44888..46072	+	394	21229512	-	XCC0034	-	hypothetical protein
35	 62.87	0	46188..46766	-	192	21229513	-	XCC0035	-	phospholipid N-methyltransferase
36	 69.00	0	47691..48161	-	156	21229514	-	XCC0036	-	hypothetical protein
37	 71.58	+1	48632..49465	+	277	21229515	-	XCC0037	-	pirin
38	 67.08	0	49684..50403	+	239	21229516	-	XCC0038	-	putative acyl-carrier phosphodiesterase-like protein
39	 65.40	0	49700..50014	+	104	21229517	-	XCC0039	-	acyl-carrier phosphodiesterase-like protein
40	 67.77	0	50748..51650	-	300	21229518	-	XCC0040	-	LysR family transcriptional regulator
41	 68.30	0	51941..52246	-	101	21229519	-	XCC0041	-	hypothetical protein
42	 67.40	0	52243..52920	-	225	21229520	nonF	XCC0042	-	NonF-related protein
43	 68.13	0	53055..53945	+	296	21229521	-	XCC0043	-	transcriptional regulator
44	 64.21	0	53983..54552	-	189	21229522	-	XCC0044	-	transcriptional regulator
45	 67.18	0	54813..55199	+	128	21229523	mecI	XCC0045	-	methicillin resistance protein
46	 68.30	0	55203..56915	+	570	21229524	-	XCC0046	-	ankyrin-like protein
47	 68.31	0	57442..58293	+	283	21229525	-	XCC0047	-	hypothetical protein
48	 67.73	0	58535..59665	+	376	21229526	-	XCC0048	-	hypothetical protein
49	 67.30	0	60084..60872	-	262	21229527	-	XCC0049	-	hypothetical protein
50	 68.77	0	60883..63447	-	854	77747725	cirA	XCC0050	-	TonB-dependent receptor
51	 70.38	+1	63652..64809	+	385	21229529	xylR	XCC0051	-	xylose repressor-like protein
52	 67.83	0	64948..67104	+	718	21229530	avrBs2	XCC0052	-	avirulence protein
53	 70.76	+1	67289..68779	-	496	77747726	-	XCC0053	-	hypothetical protein
54	 67.41	0	68776..71184	-	802	21229532	-	XCC0054	-	ATP-dependent RNA helicase
55	 65.27	0	71494..72642	-	382	21229533	-	XCC0055	-	hypothetical protein
56	 67.58	0	72930..73586	+	218	77747727	-	XCC0056	-	hemolysin III
57	 62.58	0	73653..73970	-	105	21229535	-	XCC0057	-	hypothetical protein
58	 64.55	0	73967..74344	-	125	21229536	-	XCC0058	-	hypothetical protein
59	 62.87	0	74670..75380	-	236	21229537	-	XCC0059	-	hypothetical protein
60	 63.58	0	75552..76070	-	172	21229538	-	XCC0060	-	NAD(P)H oxidoreductase
61	 64.91	0	76037..76378	-	113	21229539	-	XCC0061	-	hypothetical protein
62	 65.24	0	76469..76819	+	116	21229540	-	XCC0062	-	hypothetical protein
63	 47.57	-2	77347..78435	+	362	21229541	-	XCC0063	-	regulatory protein cII
64	 64.91	0	79469..79639	+	56	21229542	-	XCC0064	-	hypothetical protein
65	 56.90	-2	79830..80669	-	279	21229543	-	XCC0065	-	hypothetical protein
66	 58.78	-1	81392..82798	-	468	77747728	-	XCC0066	-	hypothetical protein
67	 66.28	0	83614..83871	-	85	21229545	-	XCC0067	-	hypothetical protein
68	 64.58	0	84235..84474	-	79	21229546	-	XCC0068	-	hypothetical protein
69	 66.83	0	84761..85387	+	208	21229547	-	XCC0069	-	hypothetical protein
70	 62.43	0	85785..85973	-	62	21229548	-	XCC0070	-	hypothetical protein
71	 65.15	0	86108..86305	-	65	21229549	-	XCC0071	-	transcriptional regulator
72	 63.31	0	86816..87769	+	317	21229550	-	XCC0072	-	hypothetical protein
73	 72.88	+1	87913..88830	-	305	77747729	-	XCC0073	-	hypothetical protein
74	 66.89	0	89198..89638	+	146	77747730	-	XCC0074	-	hypothetical protein
75	 68.59	0	90514..90825	-	103	21229553	-	XCC0075	-	hypothetical protein
76	 69.08	0	90822..91898	-	358	21229554	-	XCC0076	-	metalloprotease
77	 70.02	+1	91998..92654	-	218	21229555	-	XCC0077	-	hypothetical protein
78	 67.13	0	92887..93321	+	144	21229556	-	XCC0078	-	MutT/nudix family protein
79	 67.34	0	93809..94849	+	346	21229557	-	XCC0079	-	hypothetical protein
80	 67.98	0	95194..96183	+	329	21229558	-	XCC0080	-	esterase
81	 63.41	0	96289..96687	+	132	21229559	atsE	XCC0081	-	AtsE
82	 66.07	0	96703..97035	+	110	21229560	trxA	XCC0082	-	thioredoxin
83	 65.33	0	97851..99341	+	496	21229561	proP	XCC0083	-	proline/betaine transporter
84	 69.59	+1	99357..99767	-	136	21229562	-	XCC0084	-	hypothetical protein
85	 70.44	+1	99987..100781	+	264	21229563	-	XCC0085	-	hypothetical protein
86	 67.29	0	100978..101616	+	212	21229564	-	XCC0086	-	hypothetical protein
87	 75.38	+2	101694..103448	-	584	21229565	-	XCC0087	-	hypothetical protein
88	 74.52	+2	103597..105939	-	780	21229566	-	XCC0088	-	hypothetical protein
89	 75.80	+2	105858..107039	-	393	21229567	-	XCC0089	-	hypothetical protein
90	 73.47	+1	107188..108084	-	298	21229568	-	XCC0090	-	hypothetical protein
91	 68.48	0	108098..109090	-	330	21229569	moxR	XCC0091	-	methanol dehydrogenase regulator
92	 61.07	-1	109377..110198	-	273	77747731	-	XCC0092	-	hypothetical protein
93	 63.22	0	110195..111529	-	444	21229571	tldD	XCC0093	-	TldD protein
94	 63.53	0	111544..113139	-	531	21229572	tldD	XCC0094	-	TldD protein
95	 64.64	0	114027..115607	-	526	21229573	tldD	XCC0095	-	TldD protein
96	 65.59	0	116645..117661	-	338	21229574	cbbFC	XCC0096	-	fructose-1,6-bisphosphatase
97	 67.33	0	117838..119040	-	400	21229575	tyrB	XCC0097	-	aromatic amino acid aminotransferase
98	 69.69	+1	119141..121324	+	727	21229576	yncD	XCC0098	-	iron transporter
99	 63.64	0	121492..121887	+	131	21229577	-	XCC0099	-	hypothetical protein
100	 67.09	0	122252..122728	+	158	21229578	-	XCC0100	-	hypothetical protein
65.33	MEAN

4.08	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.