IslandPathversion 1.0

IslandPath Analysis: Xanthomonas campestris pv. campestris str. ATCC 33913



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.33 STD DEV: 4.08
Xanthomonas campestris pv. campestris str. ATCC 33913, complete genome - 1..5076188
4181 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.91	0	42..1370	+	442	21229479	dnaA	XCC0001	-	chromosomal replication initiation protein
2	 64.58	0	1646..2746	+	366	21229480	dnaN	XCC0002	-	DNA polymerase III subunit beta
3	 65.49	0	3633..4739	+	368	21229481	recF	XCC0003	-	recombination protein F
4	 64.99	0	4853..7297	+	814	21229482	gyrB	XCC0004	-	DNA gyrase subunit B
5	 67.85	0	7359..8201	+	280	21229483	-	XCC0005	-	hypothetical protein
6	 65.92	0	8264..9070	+	268	21229484	-	XCC0006	-	hypothetical protein
7	 62.32	0	9209..10405	+	398	21229485	-	XCC0007	-	hypothetical protein
8	 63.69	0	10559..11230	+	223	21229486	tonB	XCC0008	-	TonB protein
9	 63.78	0	11315..12076	+	253	21229487	exbB	XCC0009	-	biopolymer transport ExbB protein
10	 60.28	-1	12123..12545	+	140	21229488	exbD1	XCC0010	-	biopolymer transport ExbD1 protein
11	 60.34	-1	12549..12959	+	136	21229489	exbD2	XCC0011	-	biopolymer transport ExbD2 protein
12	 67.32	0	14113..14883	-	256	21229490	pdxJ	XCC0012	-	pyridoxal phosphate biosynthetic protein PdxJ
13	 67.78	0	14891..15160	-	89	21229491	-	XCC0013	-	hypothetical protein
14	 66.26	0	15235..16695	-	486	21229492	cls	XCC0014	-	cardiolipin synthetase
15	 68.68	0	16981..18075	+	364	21229493	-	XCC0015	-	hypothetical protein
16	 65.95	0	18170..18871	-	233	77747724	-	XCC0016	-	hypothetical protein
17	 66.82	0	19513..20853	-	446	21229495	ompP1	XCC0017	-	outer membrane protein
18	 67.68	0	21074..21766	+	230	21229496	-	XCC0018	-	hypothetical protein
19	 61.37	0	21795..22115	+	106	21229497	-	XCC0019	-	hypothetical protein
20	 69.30	0	22115..23101	+	328	21229498	serA	XCC0020	-	D-3-phosphoglycerate dehydrogenase
21	 67.87	0	24036..25616	-	526	21229499	ctp	XCC0021	-	carboxyl-terminal protease
22	 68.72	0	25781..26998	-	405	21229500	-	XCC0022	-	hypothetical protein
23	 65.30	0	27169..27825	+	218	21229501	-	XCC0023	-	hypothetical protein
24	 68.40	0	27884..29668	+	594	21229502	-	XCC0024	-	hypothetical protein
25	 62.04	0	30029..30460	-	143	21229503	-	XCC0025	-	hypothetical protein
26	 59.90	-1	30893..31942	-	349	21229504	egl	XCC0026	-	cellulase
27	 61.25	0	32351..33403	-	350	21229505	egl	XCC0027	-	cellulase
28	 63.38	0	34034..35098	-	354	21229506	egl	XCC0028	-	cellulase
29	 64.21	0	35412..36470	+	352	21229507	yahK	XCC0029	-	alcohol dehydrogenase
30	 50.49	-2	37451..37957	-	168	21229508	-	XCC0030	-	hypothetical protein
31	 68.49	0	38002..39483	-	493	21229509	gltD	XCC0031	-	glutamate synthase subunit beta
32	 67.18	0	39605..44077	-	1490	21229510	gltB	XCC0032	-	glutamate synthase subunit alpha
33	 65.48	0	44280..44702	-	140	21229511	-	XCC0033	-	hypothetical protein
34	 66.75	0	44888..46072	+	394	21229512	-	XCC0034	-	hypothetical protein
35	 62.87	0	46188..46766	-	192	21229513	-	XCC0035	-	phospholipid N-methyltransferase
36	 69.00	0	47691..48161	-	156	21229514	-	XCC0036	-	hypothetical protein
37	 71.58	+1	48632..49465	+	277	21229515	-	XCC0037	-	pirin
38	 67.08	0	49684..50403	+	239	21229516	-	XCC0038	-	putative acyl-carrier phosphodiesterase-like protein
39	 65.40	0	49700..50014	+	104	21229517	-	XCC0039	-	acyl-carrier phosphodiesterase-like protein
40	 67.77	0	50748..51650	-	300	21229518	-	XCC0040	-	LysR family transcriptional regulator
41	 68.30	0	51941..52246	-	101	21229519	-	XCC0041	-	hypothetical protein
42	 67.40	0	52243..52920	-	225	21229520	nonF	XCC0042	-	NonF-related protein
43	 68.13	0	53055..53945	+	296	21229521	-	XCC0043	-	transcriptional regulator
44	 64.21	0	53983..54552	-	189	21229522	-	XCC0044	-	transcriptional regulator
45	 67.18	0	54813..55199	+	128	21229523	mecI	XCC0045	-	methicillin resistance protein
46	 68.30	0	55203..56915	+	570	21229524	-	XCC0046	-	ankyrin-like protein
47	 68.31	0	57442..58293	+	283	21229525	-	XCC0047	-	hypothetical protein
48	 67.73	0	58535..59665	+	376	21229526	-	XCC0048	-	hypothetical protein
49	 67.30	0	60084..60872	-	262	21229527	-	XCC0049	-	hypothetical protein
50	 68.77	0	60883..63447	-	854	77747725	cirA	XCC0050	-	TonB-dependent receptor
51	 70.38	+1	63652..64809	+	385	21229529	xylR	XCC0051	-	xylose repressor-like protein
52	 67.83	0	64948..67104	+	718