IslandPath Analysis: Pelodictyon luteolum DSM 273



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.61   STD DEV: 3.94
Pelodictyon luteolum DSM 273, complete genome - 1..2364842
2083 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.13	-1	284..1420	+	378	78185893	-	Plut_0001	-	DNA-directed DNA polymerase
2	 51.26	-1	1555..2664	+	369	78185894	-	Plut_0002	-	RecF protein
3	 53.40	-1	2667..2960	+	97	78185895	-	Plut_0003	-	hypothetical protein
4	 48.94	-2	3098..4321	-	407	78185896	-	Plut_0004	-	rubredoxin:oxygen oxidoreductase, putative
5	 49.81	-1	4402..6780	-	792	78185897	-	Plut_0005	-	DNA-directed DNA polymerase B
6	 54.83	0	6887..8770	-	627	78185898	-	Plut_0006	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
7	 55.37	0	8986..10773	+	595	78185899	secD	Plut_0007	-	preprotein translocase subunit SecD
8	 54.27	0	10796..11731	+	311	78185900	secF	Plut_0008	-	preprotein translocase subunit SecF
9	 55.30	0	11785..13104	+	439	78185901	-	Plut_0009	-	peptidyl-prolyl cis-trans isomerase SurA
10	 55.97	0	13263..15197	-	644	78185902	-	Plut_0010	-	DNA gyrase, B subunit
11	 61.56	+1	15317..15943	-	208	78185903	-	Plut_0011	-	ribonuclease H
12	 58.20	0	16195..17907	+	570	78185904	-	Plut_0012	-	ribonuclease E and G
13	 62.04	+1	17924..18787	+	287	78185905	dapD	Plut_0013	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
14	 61.18	0	18792..20486	+	564	78185906	-	Plut_0014	-	peptidase S41A, C-terminal protease
15	 58.19	0	20476..21171	-	231	78185907	-	Plut_0015	-	hypothetical protein
16	 57.92	0	21172..22314	-	380	78185908	-	Plut_0016	-	geranylgeranyl reductase
17	 58.64	0	22335..23804	-	489	78185909	-	Plut_0017	-	glycyl-tRNA synthetase
18	 55.45	0	23865..24194	-	109	78185910	-	Plut_0018	-	hypothetical protein
19	 60.46	0	24249..25199	-	316	78185911	-	Plut_0019	-	muramoyltetrapeptide carboxypeptidase
20	 50.56	-1	25266..25532	-	88	78185912	-	Plut_0020	-	ATP synthase F1, epsilon subunit
21	 58.25	0	25546..26994	-	482	78185913	-	Plut_0021	-	F0F1 ATP synthase subunit beta
22	 56.25	0	27264..27791	+	175	78185914	-	Plut_0022	-	thiol:disulfide interchange protein, thioredoxin family protein
23	 60.02	0	27941..29806	+	621	78185915	-	Plut_0023	-	phosphoenolpyruvate carboxykinase
24	 54.33	0	29961..31346	+	461	78185916	-	Plut_0024	-	toluene transport protein, putative
25	 55.91	0	31450..31728	-	92	78185917	-	Plut_0025	-	hypothetical protein
26	 60.56	0	31996..33567	+	523	78185918	-	Plut_0026	-	Fe-S-cluster-containing hydrogenase components 1-like
27	 59.87	0	33587..36454	+	955	78185919	-	Plut_0027	-	molybdenum enzyme related to thiosulfate reductase and polysulfide reductase, large subunit
28	 56.64	0	37506..37934	+	142	78185920	-	Plut_0030	-	hypothetical protein
29	 54.90	0	38093..38602	+	169	78185921	-	Plut_0031	-	hypothetical protein
30	 61.18	0	38626..39099	+	157	78185922	-	Plut_0032	-	rhodanese-like protein
31	 56.96	0	39148..39384	+	78	78185923	-	Plut_0033	-	hypothetical protein
32	 57.90	0	39388..40824	+	478	78185924	-	Plut_0034	-	cobyrinic acid a,c-diamide synthase CbiA
33	 55.06	0	41104..41439	+	111	78185925	-	Plut_0035	-	sulfite reductase, dissimilatory-type, gamma subunit
34	 58.85	0	41498..42751	+	417	78185926	-	Plut_0036	-	sulfite reductase, dissimilatory-type alpha subunit
35	 61.30	0	42893..43972	+	359	78185927	-	Plut_0037	-	sulfite reductase, dissimilatory-type beta subunit
36	 61.89	+1	43990..45726	+	578	78185928	-	Plut_0038	-	putative glutamate synthase (NADPH) small subunit
37	 61.26	0	45713..46156	+	147	78185929	-	Plut_0039	-	hypothetical protein
38	 59.17	0	46203..46562	+	119	78185930	-	Plut_0040	-	DsrE protein
39	 55.01	0	46569..46937	+	122	78185931	-	Plut_0041	-	DsrF protein
40	 60.54	0	46995..47288	+	97	78185932	-	Plut_0042	-	DsrH protein
41	 63.29	+1	47315..47758	+	147	78185933	-	Plut_0043	-	hypothetical protein
42	 56.63	0	47755..48750	+	331	78185934	-	Plut_0044	-	DsrM protein
43	 60.00	0	48753..50402	+	549	78185935	-	Plut_0045	-	DsrK protein
44	 57.22	0	50392..50772	+	126	78185936	-	Plut_0046	-	hypothetical protein
45	 63.11	+1	50796..51527	+	243	78185937	-	Plut_0047	-	polysulfide reductase, subunit B, putative
46	 63.10	+1	51561..52736	+	391	78185938	-	Plut_0048	-	polysulfide reductase, subunit C, putative
47	 58.55	0	52733..53200	+	155	78185939	-	Plut_0049	-	porphyrin biosynthesis protein, putative
48	 60.04	0	53176..54579	+	467	78185940	-	Plut_0050	-	uroporphyrin-III C-methyltransferase-like
49	 62.50	+1	54569..54832	+	87	78185941	-	Plut_0051	-	hypothetical protein
50	 58.93	0	55086..55667	+	193	78185942	-	Plut_0052	-	uridine kinase-like
51	 57.95	0	55654..56949	+	431	78185943	-	Plut_0053	-	transporter, putative
52	 60.62	0	56993..58612	-	539	78185944	-	Plut_0054	-	EmrB/QacA family drug resistance transporter
53	 58.06	0	58625..59623	-	332	78185945	-	Plut_0055	-	multidrug resistance protein A
54	 57.59	0	59631..60104	-	157	78185946	-	Plut_0056	-	universal stress protein
55	 60.37	0	60101..61513	-	470	78185947	-	Plut_0057	-	outer membrane protein, putative
56	 60.76	0	61643..63742	+	699	78185948	-	Plut_0058	-	Fis family transcriptional regulator
57	 60.10	0	63849..64655	+	268	78185949	-	Plut_0059	-	hypothetical protein
58	 58.08	0	64659..65543	-	294	78185950	-	Plut_0060	-	hypothetical protein
59	 55.74	0	65604..66152	+	182	78185951	-	Plut_0061	-	hypothetical protein
60	 58.22	0	66171..66608	-	145	78185952	-	Plut_0062	-	protein tyrosine phosphatase
61	 52.14	-1	66945..67412	+	155	78185953	-	Plut_0063	-	hypothetical protein
62	 58.79	0	67435..68628	-	397	78185954	-	Plut_0064	-	aminotransferase, class I
63	 58.74	0	68647..69075	-	142	78185955	-	Plut_0065	-	hypothetical protein
64	 59.28	0	69092..70390	-	432	78185956	-	Plut_0066	-	phenylacetate--CoA ligase
65	 64.56	+1	70387..71004	-	205	78185957	-	Plut_0067	-	indolepyruvate oxidoreductase subunit B
66	 62.66	+1	71001..72599	-	532	78185958	-	Plut_0068	-	ferredoxin oxidoreductase, alpha subunit
67	 57.46	0	72881..74107	+	408	78185959	-	Plut_0069	-	sulfide dehydrogenase, flavoprotein subunit, putative
68	 58.89	0	74132..75352	-	406	78185960	-	Plut_0070	-	anion-transporting ATPase
69	 58.97	0	75653..77107	+	484	78185961	-	Plut_0071	-	sulfide-quinone reductase, putative
70	 52.83	-1	77167..77325	+	52	78185962	-	Plut_0072	-	hypothetical protein
71	 57.73	0	77673..78209	-	178	78185963	-	Plut_0073	-	nitroreductase family protein
72	 53.10	-1	78206..78817	-	203	78185964	-	Plut_0074	-	hypothetical protein
73	 61.65	+1	78868..79944	-	358	78185965	prfA	Plut_0075	-	peptide chain release factor 1
74	 57.00	0	79962..81326	-	454	78185966	-	Plut_0076	-	peptidase M50, putative membrane-associated zinc metallopeptidase
75	 60.05	0	81413..82561	-	382	78185967	-	Plut_0077	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
76	 59.31	0	82869..84989	-	706	78185968	-	Plut_0078	-	peptidase M41, FtsH
77	 59.03	0	85228..86052	+	274	78185969	-	Plut_0079	-	orotidine 5'-phosphate decarboxylase subfamily protein
78	 58.43	0	86117..87961	+	614	78185970	-	Plut_0080	-	glucosamine-fructose-6-phosphate aminotransferase, isomerising
79	 58.93	0	88013..88387	+	124	78185971	-	Plut_0081	-	hypothetical protein
80	 56.04	0	88529..90043	+	504	78185972	-	Plut_0082	-	hypothetical protein
81	 53.65	-1	90046..90429	+	127	78185973	-	Plut_0083	-	hypothetical protein
82	 59.77	0	90451..91059	+	202	78185974	-	Plut_0084	-	hypothetical protein
83	 64.07	+1	91053..91322	+	89	78185975	-	Plut_0085	-	hypothetical protein
84	 60.17	0	91341..92648	+	435	78185976	-	Plut_0086	-	periplasmic protein
85	 58.70	0	92766..93707	+	313	78185977	-	Plut_0087	-	hypothetical protein
86	 52.33	-1	93825..94124	-	99	78185978	-	Plut_0088	-	RNA recognition motif-containing protein
87	 58.56	0	94422..95753	+	443	78185979	-	Plut_0089	-	ammonium transporter
88	 57.89	0	95770..96111	+	113	78185980	-	Plut_0090	-	nitrogen regulatory protein P-II (GlnB, GlnK)
89	 62.06	+1	96193..97104	+	303	78185981	-	Plut_0091	-	peptidase C1A, papain
90	 59.54	0	97111..97671	-	186	78185982	-	Plut_0092	-	TPR repeat-containing protein
91	 55.08	0	97897..98664	+	255	78185983	-	Plut_0093	-	putative segregation and condensation protein A
92	 61.25	0	98657..99931	+	424	78185984	-	Plut_0094	-	hypothetical protein
93	 60.09	0	99939..100379	+	146	78185985	-	Plut_0095	-	hypothetical protein
94	 63.69	+1	100376..101080	+	234	78185986	-	Plut_0096	-	protease, putative
95	 54.55	0	101145..101540	+	131	78185987	-	Plut_0097	-	Iojap-related protein
96	 58.17	0	101707..104154	+	815	78185988	-	Plut_0098	-	DNA gyrase, subunit A
97	 58.55	0	104208..104441	+	77	78185989	-	Plut_0099	-	Zn-finger, CDGSH type
98	 56.41	0	104478..106271	+	597	78185990	-	Plut_0100	-	CTP synthetase
99	 57.23	0	106313..107329	+	338	78185991	-	Plut_0101	-	putative AefA
100	 54.41	0	112974..114662	-	562	78185992	-	Plut_0102	-	hypothetical protein
57.61	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.