IslandPathversion 1.0

IslandPath Analysis: Bordetella parapertussis 12822



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.05 STD DEV: 4.08
Bordetella parapertussis 12822, complete genome - 1..4773551
4185 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.50	-1	1..1920	+	639	33594724	gidA	BPP0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 66.52	0	1917..2609	+	230	33594725	gidB	BPP0002	-	glucose inhibited division protein B
3	 62.16	-1	2606..3403	+	265	33594726	parA	BPP0003	-	ParA family protein
4	 68.03	0	3410..4216	+	268	33594727	-	BPP0004	-	GNAT family acetyltransferase
5	 68.08	0	4260..5177	+	305	33594728	parB	BPP0005	-	chromosome partitioning protein ParB
6	 71.36	0	5170..6171	+	333	33594729	ansB	BPP0006	-	L-asparaginase II precursor
7	 62.55	-1	6767..7957	+	396	33594730	tuf	BPP0007	-	elongation factor Tu
8	 58.79	-2	8196..8576	+	126	33594731	secE	BPP0008	-	preprotein translocase subunit SecE
9	 54.49	-2	8586..9119	+	177	33594732	nusG	BPP0009	-	transcription antitermination protein NusG
10	 63.43	-1	9183..9614	+	143	33594733	rplK	BPP0010	-	50S ribosomal protein L11
11	 64.38	0	9617..10315	+	232	33594734	rplA	BPP0011	-	50S ribosomal protein L1
12	 61.33	-1	10558..11082	+	174	33594735	rplJ	BPP0012	-	50S ribosomal protein L10
13	 62.50	-1	11164..11547	+	127	33594736	rplL	BPP0013	-	50S ribosomal protein L7/L12
14	 63.23	-1	11683..15819	+	1378	33594737	rpoB	BPP0014	-	DNA-directed RNA polymerase subunit beta
15	 64.12	0	15819..20063	+	1414	33594738	rpoC	BPP0015	-	DNA-directed RNA polymerase subunit beta'
16	 65.43	0	20172..20576	-	134	33594739	-	BPP0016	-	putative lipoprotein
17	 71.56	0	20817..22043	+	408	33594740	-	BPP0017	-	hypothetical protein
18	 68.38	0	24353..25459	-	368	33594741	-	BPP0019	-	putative peptidoglycan binding protein
19	 62.86	-1	25477..26211	-	244	33594742	-	BPP0020	-	two-component response regulator
20	 68.63	0	26469..27281	+	270	33594743	-	BPP0021	-	two-component response regulator
21	 66.35	0	27311..28246	-	311	33594744	-	BPP0022	-	putative metal transporter
22	 63.77	-1	28252..28527	-	91	33594745	-	BPP0023	-	hypothetical protein
23	 61.11	-1	29104..29481	+	125	33594746	rpsL	BPP0024	-	30S ribosomal protein S12
24	 59.87	-2	29645..30115	+	156	33594747	rpsG	BPP0025	-	30S ribosomal protein S7
25	 62.58	-1	30133..32235	+	700	33594748	fusA	BPP0026	-	elongation factor G
26	 62.55	-1	32312..33502	+	396	33594749	tuf	BPP0027	-	elongation factor Tu
27	 59.62	-2	33566..33877	+	103	33594750	rpsJ	BPP0028	-	30S ribosomal protein S10
28	 65.51	0	34229..34918	+	229	161610405	rplC	BPP0029	-	50S ribosomal protein L3
29	 61.49	-1	34923..35540	+	205	33594752	rplD	BPP0030	-	50S ribosomal protein L4
30	 56.90	-2	35537..35833	+	98	33594753	rplW	BPP0031	-	50S ribosomal protein L23
31	 64.86	0	35834..36661	+	275	33594754	rplB	BPP0032	-	50S ribosomal protein L2
32	 57.61	-2	36674..36949	+	91	33594755	rpsS	BPP0033	-	30S ribosomal protein S19
33	 57.27	-2	36953..37282	+	109	33594756	rplV	BPP0034	-	50S ribosomal protein L22
34	 63.51	-1	37292..38083	+	263	33594757	rpsC	BPP0035	-	30S ribosomal protein S3
35	 63.31	-1	38086..38502	+	138	33594758	rplP	BPP0036	-	50S ribosomal protein L16
36	 60.42	-1	38513..38704	+	63	33594759	rpmC	BPP0037	-	50S ribosomal protein L29
37	 57.80	-2	38706..38987	+	93	33594760	rpsQ	BPP0038	-	30S ribosomal protein S17
38	 66.32	0	40103..41530	-	475	33594761	-	BPP0040	-	putative aldehyde dehydrogenase
39	 60.43	-1	42425..42793	+	122	33594762	rplN	BPP0041	-	50S ribosomal protein L14
40	 62.93	-1	42804..43124	+	106	33594763	rplX	BPP0042	-	50S ribosomal protein L24
41	 57.96	-2	43137..43676	+	179	33594764	rplE	BPP0043	-	50S ribosomal protein L5
42	 59.15	-2	43689..43994	+	101	33594765	rpsN	BPP0044	-	30S ribosomal protein S14
43	 61.11	-1	44005..44400	+	131	33594766	rpsH	BPP0045	-	30S ribosomal protein S8
44	 60.11	-1	44411..44944	+	177	33594767	rplF	BPP0046	-	50S ribosomal protein L6
45	 64.19	0	44966..45328	+	120	33594768	rplR	BPP0047	-	50S ribosomal protein L18
46	 61.90	-1	45344..45868	+	174	33594769	rpsE	BPP0048	-	30S ribosomal protein S5
47	 62.37	-1	45872..46057	+	61	33594770	rpmD	BPP00