IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.46	-1	1..1116	-	371	53717640	-	BPSL0001	-	carboxylate-amine ligase
2	 66.17	0	1161..2375	-	404	53717641	-	BPSL0002	-	hypothetical protein
3	 71.66	0	3114..5096	-	660	161723216	mnmC	BPSL0003	-	5-methylaminomethyl-2-thiouridine methyltransferase
4	 62.01	-1	5488..5766	+	92	53717643	hupA	BPSL0004	-	DNA-binding protein HU-alpha
5	 67.71	0	5869..7209	-	446	53717644	-	BPSL0005	-	putative cobalamin synthesis protein/P47K
6	 61.73	-1	7528..8013	-	161	53717645	-	BPSL0006	-	hypothetical protein
7	 66.80	0	8395..10668	+	757	53717646	gspD	BPSL0007	-	general secretory pathway protein D
8	 69.61	0	10665..12158	+	497	53717647	gspE	BPSL0008	-	general secretory pathway protein E
9	 68.88	0	12163..13380	+	405	53717648	gspF	BPSL0009	-	general secretory pathway protein F
10	 71.53	0	13452..13862	-	136	53717649	gspC	BPSL0010	-	putative general secretory pathway protein
11	 62.47	-1	14010..14462	+	150	53717650	gspG	BPSL0011	-	general secretory pathway protein G
12	 72.71	+1	14617..15096	+	159	53717651	gspH	BPSL0012	-	general secretory pathway protein H
13	 72.10	0	15099..15503	+	134	53717652	gspI	BPSL0013	-	general secretory pathway protein I
14	 72.02	0	15481..16209	+	242	53717653	gspJ	BPSL0014	-	general secretory pathway protein J
15	 69.37	0	16391..17461	+	356	53717654	gspK	BPSL0015	-	general secretory pathway protein K
16	 73.31	+1	17486..18916	+	476	53717655	gspL	BPSL0016	-	general secretory pathway protein L
17	 71.01	0	18913..19419	+	168	53717656	gspM	BPSL0017	-	general secretory pathway protein M
18	 70.96	0	19458..20249	+	263	53717657	gspN	BPSL0018	-	general secretory pathway protein N
19	 74.21	+1	20480..22135	-	551	53717658	-	BPSL0019	-	outer membrane efflux lipoprotein
20	 73.63	+1	22357..22629	-	90	53717659	-	BPSL0020	-	hypothetical protein
21	 69.72	0	22828..23319	+	163	53717660	-	BPSL0021	-	MarR family protein
22	 66.86	0	23466..25028	+	520	53717661	-	BPSL0022	-	putative transporter protein
23	 70.56	0	25088..26011	-	307	53717662	-	BPSL0023	-	LysR family transcriptional regulator
24	 74.69	+1	26223..26621	+	132	53717663	-	BPSL0024	-	LrgA family protein
25	 68.74	0	26690..27412	+	240	53717664	-	BPSL0025	-	hypothetical protein
26	 65.75	0	28205..28747	+	180	161723215	fliL	BPSL0026	-	flagellar basal body-associated protein FliL
27	 63.26	0	28770..29768	+	332	53717666	fliM	BPSL0027	-	flagellar motor switch protein FliM
28	 68.07	0	29761..30258	+	165	53717667	fliN	BPSL0028	-	flagellar motor switch protein
29	 75.15	+1	30426..30920	+	164	53717668	fliO	BPSL0029	-	flagellar protein
30	 66.01	0	30991..31752	+	253	53717669	fliP	BPSL0030	-	flagellar biosynthesis protein FliP
31	 67.77	0	31778..32050	+	90	53717670	fliQ	BPSL0031	-	flagellar biosynthesis protein FliQ
32	 67.69	0	32169..32951	+	260	53717671	fliR	BPSL0032	-	flagellar biosynthetic protein
33	 72.96	+1	33271..33699	-	142	53717672	-	BPSL0033	-	MerR family transcriptional regulator
34	 72.15	0	33781..34656	+	291	53717673	-	BPSL0034	-	hypothetical protein
35	 76.63	+1	34649..35170	+	173	53717674	-	BPSL0035	-	hypothetical protein
36	 66.77	0	35328..36341	+	337	53717675	-	BPSL0036	-	putative transport protein
37	 66.04	0	36425..37222	+	265	53717676	-	BPSL0037	-	putative ATP-binding ABC transporter protein
38	 67.37	0	37241..38098	+	285	53717677	-	BPSL0038	-	binding-protein-dependent transport systems inner membrane component
39	 71.45	0	38176..39555	+	459	53717678	-	BPSL0039	-	sensor kinase protein
40	 67.40	0	39566..40243	+	225	53717679	-	BPSL0040	-	response regulator protein
41	 65.43	0	40566..41693	+	375	53717680	-	BPSL0041	-	outer membrane porin lipoprotein precursor
42	 68.41	0	42169..44181	+	670	53717681	-	BPSL0042	-	type III restriction-modification system methylase
43	 68.12	0	44222..47251	+	1009	53717682	-	BPSL0043	-	type III restriction system endonuclease
44	 66.39	0	47789..48889	+	366	53717683	-	BPSL0044	-	putative outer membrane porin protein
45	 66.35	0	49289..50248	+	319	53717684	-	BPSL0045	-	AraC family transcription regulator
46	 71.17	0	50371..51102	-	243	53717685	-	BPSL0046	-	ABC transport system ATP-binding protein
47	 70.40	0	51475..52197	-	240	53717686	-	BPSL0047	-	ABC transport system ATP-binding protein
48	 73.43	+1	52194..53243	-	349	53717687	-	BPSL0048	-	hypothetical protein
49	 72.70	+1	53240..54118	-	292	53717688	-	BPSL0049	-	putative branched-chain amino acid transport system permease protein
50	 67.78	0	54123..55382	-	419	53717689	-	BPSL0050	-	hypothetical protein
51	 70.52	0	55599..57104	-	501	53717690	-	BPSL0051	-	putative phenylacetaldehyde dehydrogenase
52	 67.43	0	57160..57552	-	130	53717691	-	BPSL0052	-	hypothetical protein
53	 67.65	0	57563..58372	-	269	53717692	-	BPSL0053	-	hypothetical protein
54	 73.06	+1	58418..59215	-	265	53717693	-	BPSL0054	-	putative short chain dehydrogenase
55	 69.96	0	59300..60970	-	556	53717694	-	BPSL0055	-	glucose-methanol-choline (GMC) oxidoreductase family protein
56	 65.20	0	61697..62038	+	113	53717695	-	BPSL0056	-	PadR-like family transcriptional regulator
57	 70.20	0	62035..63222	+	395	53717696	-	BPSL0057	-	hypothetical protein
58	 70.21	0	63895..64881	-	328	53717697	-	BPSL0058	-	fatty acid desaturase
59	 72.04	0	64911..65747	-	278	53717698	-	BPSL0059	-	hypothetical protein
60	 73.33	+1	66187..67281	-	364	53717699	-	BPSL0060	-	AraC family transcription regulator
61	 67.19	0	67394..68530	+	378	53717700	-	BPSL0061	-	putative acyl-CoA dehydrogenase
62	 70.98	0	69196..70401	+	401	53717701	-	BPSL0062	-	acetyl-CoA acetyltransferase
63	 70.86	0	70414..72537	+	707	53717702	-	BPSL0063	-	putative fatty oxidation complex alpha subunit
64	 72.13	0	72925..74058	+	377	53717703	-	BPSL0064	-	alpha-methylacyl-CoA racemase
65	 68.25	0	74135..74701	-	188	53717704	-	BPSL0065	-	putative lipoprotein
66	 67.96	0	75037..75501	-	154	53717705	-	BPSL0066	-	hypothetical protein
67	 66.89	0	76057..76497	+	146	53717706	-	BPSL0067	-	hypothetical protein
68	 68.83	0	76484..76852	+	122	53717707	-	BPSL0068	-	putative lipoprotein
69	 74.44	+1	77520..78278	-	252	53717708	-	BPSL0069	-	putative transmembrane regulator
70	 69.19	0	78275..78790	-	171	53717709	-	BPSL0070	-	putative RNA polymerase sigma factor
71	 70.53	0	78951..80036	+	361	53717710	-	BPSL0071	-	putative catalase
72	 64.58	0	80033..80560	+	175	53717711	-	BPSL0072	-	putative type-b cytochrome
73	 64.24	0	81428..83896	-	822	53717712	gyrB	BPSL0073	-	DNA gyrase subunit B
74	 63.59	0	84085..85188	-	367	53717713	dnaN	BPSL0074	-	DNA polymerase III subunit beta
75	 65.67	0	85351..86952	-	533	53717714	dnaA	BPSL0075	-	chromosomal replication initiation protein
76	 65.93	0	87398..87532	+	44	53717715	rpmH	BPSL0075a	-	50S ribosomal protein L34
77	 68.37	0	87606..88016	+	136	53717716	rnpA	BPSL0076	-	ribonuclease P protein component
78	 64.07	0	88096..88365	+	89	53717717	-	BPSL0077	-	hypothetical protein
79	 64.16	0	88374..90050	+	558	53717718	-	BPSL0078	-	putative inner membrane protein translocase component YidC
80	 60.61	-1	90207..90668	-	153	53717719	-	BPSL0079	-	hypothetical protein
81	 69.02	0	90964..92367	+	467	53717720	trmE	BPSL0080	-	tRNA modification GTPase TrmE
82	 59.84	-1	92536..93765	+	409	53717721	intA	BPSL0081	-	putative phage integrase
83	 66.81	0	94413..97280	-	955	53717722	-	BPSL0082	-	hypothetical protein
84	 64.33	0	97405..97746	-	113	53717723	-	BPSL0083	-	hypothetical protein
85	 61.63	-1	97743..98000	-	85	53717724	-	BPSL0084	-	hypothetical protein
86	 69.49	0	97993..98169	-	58	53717725	-	BPSL0085	-	hypothetical protein
87	 67.50	0	98537..99016	-	159	53717726	-	BPSL0086	-	hypothetical protein
88	 54.98	-2	99409..99930	-	173	53717727	-	BPSL0087	-	putative DNA-binding protein
89	 61.33	-1	100338..101255	-	305	53717728	-	BPSL0088	-	hypothetical protein
90	 57.68	-2	101248..102249	-	333	53717729	-	BPSL0089	-	hypothetical protein
91	 61.61	-1	102609..103439	-	276	53717730	-	BPSL0090	-	putative transposase protein
92	 56.82	-2	103466..103729	-	87	53717731	-	BPSL0091	-	putative transposase protein
93	 58.90	-1	104028..104915	-	295	53717732	-	BPSL0092	-	putative lipoprotein
94	 65.80	0	105283..106440	+	385	53717733	-	BPSL0093	-	putative lipoprotein
95	 61.54	-1	106503..106658	+	51	53717734	-	BPSL0094	-	putative lipoprotein
96	 60.90	-1	107005..107316	+	103	53717735	-	BPSL0095	-	hypothetical protein
97	 57.04	-2	107334..107894	+	186	53717736	speG	BPSL0096	-	spermidine n(1)-acetyltransferase
98	 59.71	-1	108383..108727	+	114	53717737	-	BPSL0097	-	hypothetical protein
99	 67.57	0	108943..109497	+	184	53717738	-	BPSL0098	-	hypothetical protein
100	 67.39	0	109682..110098	-	138	53717739	-	BPSL0099	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.