IslandPath Analysis: Rickettsia rickettsii str. 'Sheila Smith'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.02   STD DEV: 4.40
Rickettsia rickettsii str. 'Sheila Smith', complete genome - 1..1257710
1345 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.59	0	1..822	+	273	157827863	-	A1G_00005	-	hypothetical protein
2	 29.56	0	1082..1399	+	105	157827864	-	A1G_00010	-	thioredoxin
3	 29.60	0	1409..2158	+	249	157827865	-	A1G_00015	-	O-antigen export system ATP-binding protein RfbE
4	 29.09	0	2159..2935	+	258	157827866	-	A1G_00020	-	O-antigen export system permease protein RfbA
5	 32.50	0	2932..6033	+	1033	157827867	-	A1G_00025	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 32.50	0	6077..6316	-	79	157827868	-	A1G_00030	-	hypothetical protein
7	 36.98	+1	6443..7237	-	264	157827869	-	A1G_00035	-	UDP-N-acetylglucosamine acyltransferase
8	 36.07	0	7244..7681	-	145	157827870	fabZ	A1G_00040	-	(3R)-hydroxymyristoyl-ACP dehydratase
9	 35.26	0	7877..8914	-	345	157827871	lpxD	A1G_00045	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
10	 38.25	+1	9243..9425	+	60	157827872	-	A1G_00050	-	hypothetical protein
11	 33.89	0	9627..9986	+	119	157827873	-	A1G_00055	-	esterase of the alpha-beta hydrolase superfamily protein
12	 31.17	0	9965..10195	+	76	157827874	-	A1G_00060	-	esterase of the alpha-beta hydrolase superfamily protein
13	 26.67	-1	11497..11646	-	49	157827875	-	A1G_00065	-	ankyrin repeat-containing protein
14	 32.21	0	11702..11968	-	88	157827876	-	A1G_00070	-	ankyrin repeat-containing protein
15	 27.37	-1	12022..12474	-	150	157827877	-	A1G_00075	-	ankyrin repeat-containing protein
16	 40.16	+1	12813..13808	+	331	157827878	-	A1G_00080	-	nifR3-like protein
17	 28.68	0	13826..14749	+	307	157827879	-	A1G_00085	-	hypothetical protein
18	 24.36	-1	14835..14990	+	51	157827880	-	A1G_00090	-	hypothetical protein
19	 29.36	0	14998..15525	-	175	157827881	-	A1G_00095	-	hypothetical protein
20	 26.52	-1	15513..16217	-	234	157827882	-	A1G_00100	-	zinc/manganese ABC transporter substrate binding protein
21	 31.12	0	16463..17773	-	436	157827883	-	A1G_00105	-	poly(A) polymerase
22	 32.44	0	18263..18487	-	74	157827884	-	A1G_00110	-	hypothetical protein
23	 32.37	0	18572..19300	-	242	157827885	-	A1G_00115	-	hypothetical protein
24	 27.89	0	19321..19467	-	48	157827886	-	A1G_00120	-	hypothetical protein
25	 29.91	0	19665..19781	+	38	157827887	-	A1G_00125	-	hypothetical protein
26	 33.82	0	20197..25797	+	1866	157827888	-	A1G_00130	-	cell surface antigen
27	 31.78	0	26053..26181	+	42	157827889	-	A1G_00135	-	hypothetical protein
28	 26.19	-1	26543..26668	+	41	157827890	-	A1G_00140	-	hypothetical protein
29	 26.05	-1	27113..27853	+	246	157827891	-	A1G_00145	-	hypothetical protein
30	 26.92	-1	27820..28053	+	77	157827892	-	A1G_00150	-	TPR repeat-containing protein
31	 22.95	-2	28194..28376	+	60	157827893	-	A1G_00155	-	hypothetical protein
32	 29.90	0	28708..29202	-	164	157827894	-	A1G_00160	-	F0F1 ATP synthase subunit B
33	 25.32	-1	29202..29675	-	157	157827895	-	A1G_00165	-	F0F1 ATP synthase subunit B'
34	 37.44	+1	29694..29912	-	72	157827896	-	A1G_00170	-	F0F1 ATP synthase subunit C
35	 30.32	0	30114..30842	-	242	157827897	-	A1G_00175	-	F0F1 ATP synthase subunit A
36	 28.62	0	30847..31143	-	98	157827898	-	A1G_00180	-	hypothetical protein
37	 31.18	0	31221..32054	-	277	157827899	-	A1G_00185	-	hypothetical protein
38	 35.44	0	32218..32739	+	173	157827900	-	A1G_00190	-	hypothetical protein
39	 32.02	0	32986..34590	-	534	157827901	-	A1G_00195	-	hypothetical protein
40	 34.29	0	34713..34922	+	69	157827902	recF	A1G_00200	-	recombination protein F
41	 31.12	0	35019..36101	-	360	157827903	-	A1G_00205	-	recombination protein F
42	 29.37	0	36125..36427	-	100	157827904	-	A1G_00210	-	hypothetical protein
43	 27.07	-1	36763..37257	-	164	157827905	-	A1G_00215	-	dihydrofolate reductase
44	 26.88	-1	37254..37346	-	30	157827906	-	A1G_00220	-	hypothetical protein
45	 29.68	0	37589..38545	-	318	157827907	-	A1G_00225	-	folate synthesis bifunctional protein
46	 30.61	0	39004..39663	-	219	157827908	-	A1G_00230	-	hypothetical protein
47	 26.00	-1	39745..40044	-	99	157827909	-	A1G_00235	-	hypothetical protein
48	 27.02	-1	40212..40607	-	131	157827910	-	A1G_00240	-	hypothetical protein
49	 23.81	-1	41031..41303	-	90	157827911	-	A1G_00245	-	hypothetical protein
50	 25.35	-1	41679..41966	-	95	157827912	-	A1G_00250	-	hypothetical protein
51	 27.12	-1	42139..42315	-	58	157827913	-	A1G_00255	-	hypothetical protein
52	 21.15	-2	42305..42460	-	51	157827914	-	A1G_00260	-	hypothetical protein
53	 26.91	-1	42624..43199	+	191	157827915	-	A1G_00265	-	Sco2 protein precursor
54	 31.58	0	43210..43779	-	189	157827916	-	A1G_00270	-	hypothetical protein
55	 27.06	-1	43845..44513	+	222	157827917	-	A1G_00275	-	hypothetical protein
56	 34.26	0	44904..45227	-	107	157827918	-	A1G_00280	-	hypothetical protein
57	 32.93	0	45075..45572	+	165	157827919	-	A1G_00285	-	hypothetical protein
58	 34.52	0	45538..45873	+	111	157827920	-	A1G_00290	-	hypothetical protein
59	 36.55	+1	45976..46317	+	113	157827921	-	A1G_00295	-	cell surface antigen-like protein Sca10
60	 34.32	0	46551..47873	-	440	157827922	-	A1G_00300	-	hypothetical protein
61	 29.34	0	48035..48385	-	116	157827923	-	A1G_00305	-	hypothetical protein
62	 35.14	0	48367..48477	-	36	157827924	-	A1G_00310	-	hypothetical protein
63	 24.85	-1	48542..48706	-	54	157827925	-	A1G_00315	-	hypothetical protein
64	 31.31	0	49192..49389	-	65	157827926	-	A1G_00330	-	hypothetical protein
65	 33.33	0	49422..49628	-	68	157827927	-	A1G_00335	-	hypothetical protein
66	 27.54	-1	50702..50770	-	22	157827928	-	A1G_00350	-	hypothetical protein
67	 33.92	0	50842..51012	-	56	157827929	-	A1G_00355	-	hypothetical protein
68	 36.32	0	52570..55143	+	857	157827930	-	A1G_00380	-	clpB protein
69	 25.61	-1	55374..55865	-	163	157827931	-	A1G_00385	-	hypothetical protein
70	 34.01	0	55992..57026	-	344	157827932	-	A1G_00390	-	O-sialoglycoprotein endopeptidase
71	 31.49	0	57210..58403	-	397	157827933	-	A1G_00395	-	acyl-CoA desaturase 1
72	 27.22	-1	58682..58861	-	59	157827934	-	A1G_00400	-	hypothetical protein
73	 27.05	-1	59348..59713	+	121	157827935	rpsF	A1G_00405	-	30S ribosomal protein S6
74	 31.94	0	59738..60025	+	95	157827936	rpsR	A1G_00410	-	30S ribosomal protein S18
75	 30.04	0	60037..60552	+	171	157827937	rplI	A1G_00415	-	50S ribosomal protein L9
76	 30.90	0	60854..62290	+	478	157827938	-	A1G_00420	-	cell cycle protein MesJ
77	 37.51	+1	62390..64303	+	637	157827939	-	A1G_00425	-	cell division protein ftsH
78	 32.32	0	64387..64584	+	65	157827940	-	A1G_00430	-	site-specific DNA methylase
79	 22.46	-2	64572..64709	+	45	157827941	-	A1G_00435	-	site-specific DNA methylase
80	 36.64	+1	65116..65901	+	261	157827942	sdhB	A1G_00440	-	succinate dehydrogenase iron-sulfur subunit
81	 31.46	0	65976..66188	+	70	157827943	-	A1G_00445	-	hypothetical protein
82	 35.29	0	66185..66337	+	50	157827944	-	A1G_00450	-	hypothetical protein
83	 33.09	0	66462..67682	-	406	157827945	-	A1G_00455	-	hypothetical protein
84	 31.67	0	67661..68440	-	259	157827946	-	A1G_00460	-	prolipoprotein diacylglyceryl transferase
85	 24.04	-1	68499..68681	+	60	157827947	-	A1G_00465	-	hypothetical protein
86	 27.78	0	68697..69848	+	383	157827948	-	A1G_00470	-	hypothetical protein
87	 30.42	0	70040..71722	+	560	157827949	-	A1G_00475	-	putative inner membrane protein translocase component YidC
88	 30.04	0	71726..72271	+	181	157827950	-	A1G_00480	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
89	 29.59	0	72285..72845	+	186	157827951	-	A1G_00485	-	hypothetical protein
90	 30.99	0	73014..73397	-	127	157827952	-	A1G_00490	-	hypothetical protein
91	 35.19	0	74764..74871	+	35	157827953	-	A1G_00505	-	hypothetical protein
92	 30.07	0	74938..75612	-	224	157827954	-	A1G_00510	-	polypeptide deformylase
93	 31.60	0	75811..77307	+	498	157827955	-	A1G_00515	-	ADP,ATP carrier protein
94	 34.88	0	77503..78798	+	431	157827956	-	A1G_00520	-	glycerol-3-phosphate transporter
95	 32.86	0	78823..79245	+	140	157827957	ndk	A1G_00525	-	nucleoside diphosphate kinase
96	 32.74	0	79249..81117	+	622	157827958	-	A1G_00530	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
97	 25.35	-1	81101..81676	+	191	157827959	gidB	A1G_00535	-	glucose-inhibited division protein B
98	 28.26	0	81673..82440	+	255	157827960	-	A1G_00540	-	soj protein
99	 27.41	-1	82427..83287	+	286	157827961	-	A1G_00545	-	stage 0 sporulation protein J
100	 29.80	0	83521..85188	+	555	157827962	-	A1G_00550	-	putative ABC transporter ATP-binding protein
32.02	MEAN

4.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.