IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.77	0	52..525	+	157	37519570	-	glr0001	-	hypothetical protein
2	 63.96	0	595..927	+	110	37519571	-	glr0002	-	transcription regulator ArsR
3	 67.77	+1	977..1792	+	271	37519572	-	glr0003	-	channel protein
4	 62.59	0	1799..2215	+	138	37519573	-	glr0004	-	arsenate reductase ArsC-like protein
5	 60.55	0	2212..2898	+	228	37519574	-	glr0005	-	arsenical resistance protein ArsH-like protein
6	 60.85	0	2933..3379	+	148	37519575	-	glr0006	-	hypothetical protein
7	 61.56	0	3492..3824	+	110	37519576	-	glr0007	-	transcription regulator ArsR
8	 59.53	0	4005..5027	+	340	37519577	-	glr0008	-	phosphate ABC transporter periplasmic phosphate-binding protein
9	 64.99	0	5096..6052	+	318	37519578	-	glr0009	-	phosphate ABC transporter permease protein
10	 61.75	0	6052..6966	+	304	37519579	-	glr0010	-	phosphate ABC transporter permease protein
11	 60.67	0	6960..7760	+	266	37519580	-	glr0011	-	phosphate ABC transporter ATP binding protein
12	 60.45	0	7984..8997	+	337	37519581	-	glr0012	-	phosphate ABC transporter periplasmic phosphate-binding protein
13	 60.47	0	9349..10380	+	343	37519582	-	glr0013	-	phosphate ABC transporter periplasmic phosphate-binding protein
14	 58.63	0	10503..11510	+	335	37519583	-	glr0014	-	phosphate ABC transporter periplasmic phosphate-binding protein
15	 60.87	0	11611..12627	+	338	37519584	-	glr0015	-	phosphate ABC transporter periplasmic phosphate-binding protein
16	 64.69	0	12781..13944	+	387	37519585	-	glr0016	-	phosphate ABC transporter periplasmic phosphate-binding protein
17	 58.91	0	14329..14934	+	201	37519586	-	glr0017	-	hypothetical protein
18	 64.39	0	14939..15508	-	189	37519587	-	gll0018	-	hypothetical protein
19	 66.16	0	15608..16990	-	460	37519588	-	gll0019	-	hypothetical protein
20	 66.01	0	17120..18490	-	456	37519589	-	gll0020	-	hypothetical protein
21	 62.65	0	18536..20353	-	605	37519590	-	gll0021	-	HlyB/MsbA family ABC transporter
22	 63.53	0	20457..21125	-	222	37519591	-	gll0022	-	two-component response regulator
23	 65.36	0	21151..22677	-	508	37519592	-	gll0023	-	two-component sensor histidine kinase
24	 68.82	+1	23077..23634	+	185	37519593	-	glr0024	-	hypothetical protein
25	 67.82	+1	23846..26275	-	809	37519594	-	gll0025	-	primosome assembly protein PriA
26	 68.09	+1	26350..26910	-	186	37519595	-	gll0026	-	hypothetical protein
27	 66.20	0	26907..27989	-	360	37519596	-	gll0027	-	hypothetical protein
28	 61.87	0	28214..28672	+	152	37519597	-	glr0028	-	hypothetical protein
29	 60.37	0	28697..29236	+	179	37519598	-	glr0029	-	hypothetical protein
30	 65.51	0	29214..29906	-	230	37519599	rpiA	gvip001	-	ribose 5-phosphate isomerase
31	 59.49	0	29929..30165	-	78	37519600	-	gsl0031	-	hypothetical protein
32	 58.46	0	30219..31022	-	267	37519601	-	gll0032	-	hypothetical protein
33	 61.71	0	31169..33247	+	692	37519602	-	glr0033	-	two-component hybrid sensor and regulator
34	 61.08	0	33259..35388	-	709	37519603	-	gll0034	-	replicative DNA helicase
35	 67.94	+1	35538..36401	+	287	37519604	-	glr0035	-	L-asparaginase
36	 59.06	0	36493..37110	-	205	37519605	-	gll0036	-	hypothetical protein
37	 65.41	0	37107..38303	-	398	37519606	-	gll0037	-	hypothetical protein
38	 63.71	0	38379..38750	-	123	37519607	-	gll0038	-	hypothetical protein
39	 65.06	0	38784..39467	-	227	37519608	-	gll0039	-	hypothetical protein
40	 56.61	-1	39755..39943	+	62	37519609	-	gsr0040	-	hypothetical protein
41	 66.62	0	40091..42412	+	773	37519610	recJ	gvip002	-	single-strand-DNA-specific exonuclease
42	 61.29	0	42391..42669	-	92	37519611	-	gsl0042	-	hypothetical protein
43	 63.27	0	43042..44337	+	431	37519612	purB	gvip003	-	adenylosuccinate lyase
44	 63.75	0	44494..44904	-	136	37519613	-	gll0044	-	hypothetical protein
45	 57.05	-1	45175..45621	+	148	37519614	-	glr0045	-	hypothetical protein
46	 62.68	0	45641..47422	-	593	37519615	-	gll0046	-	hypothetical protein
47	 61.49	0	47532..49289	-	585	37519616	-	gll0047	-	hypothetical protein
48	 63.89	0	49484..49807	+	107	37519617	-	glr0048	-	hypothetical protein
49	 59.88	0	49883..50044	-	53	37519618	-	gsl0049	-	hypothetical protein
50	 63.08	0	50393..51367	+	324	37519619	-	glr0050	-	hypothetical protein
51	 63.66	0	51413..52609	-	398	37519620	-	gll0051	-	Na+ ABC transporter permease protein
52	 64.76	0	52606..53340	-	244	37519621	-	gll0052	-	Na+ ABC transporter ATP-binding protein
53	 65.92	0	53346..54809	-	487	37519622	-	gll0053	-	hypothetical protein
54	 64.52	0	54893..55915	-	340	37519623	-	gll0054	-	serine/threonine kinase
55	 61.40	0	55984..57918	-	644	37519624	-	gll0055	-	two-component sensor histidine kinase
56	 66.92	+1	57986..59155	+	389	37519625	-	glr0056	-	hypothetical protein
57	 61.16	0	59206..59895	+	229	37519626	-	glr0057	-	hypothetical protein
58	 63.38	0	60314..61408	+	364	37519627	-	glr0058	-	hypothetical protein
59	 66.21	0	61425..62516	+	363	37519628	-	glr0059	-	hypothetical protein
60	 64.64	0	62566..63699	+	377	37519629	-	glr0060	-	hypothetical protein
61	 65.35	0	63740..64879	-	379	37519630	-	gll0061	-	hypothetical protein
62	 66.81	0	64964..65668	-	234	37519631	-	gll0062	-	two-component response regulator
63	 68.46	+1	65718..66386	-	222	37519632	upp	gll0063	-	uracil phosphoribosyltransferase
64	 58.56	0	66396..66827	-	143	37519633	-	gll0064	-	hypothetical protein
65	 62.56	0	66796..67233	-	145	37519634	-	gll0065	-	hypothetical protein
66	 66.05	0	67312..68277	-	321	37519635	-	gll0066	-	DNA polymerase III subunit delta
67	 65.02	0	68283..69554	-	423	37519636	-	gll0067	-	carboxyl-terminal processing protease
68	 64.10	0	69600..69989	-	129	37519637	-	gll0068	-	hypothetical protein
69	 68.47	+1	70061..71170	-	369	37519638	proB	gvip004	-	gamma-glutamyl kinase
70	 63.39	0	71182..71517	-	111	37519639	-	gll0070	-	hypothetical protein
71	 66.67	0	71624..72922	+	432	37519640	hemL	gvip005	-	glutamate-1-semialdehyde aminotransferase
72	 64.75	0	72977..73498	+	173	37519641	lspA	glr0072	-	lipoprotein signal peptidase
73	 68.81	+1	73503..74435	+	310	37519642	-	glr0073	-	pseudouridine synthase
74	 62.47	0	74440..75273	-	277	37519643	-	gll0074	-	hypothetical protein
75	 55.04	-1	75452..76285	+	277	37519644	-	glr0075	-	sugar-non-specific nuclease NucA-like protein
76	 57.55	0	76474..76791	+	105	37519645	-	glr0076	-	putative transposase
77	 51.67	-2	76791..77657	+	288	37519646	-	glr0077	-	putative transposase
78	 62.79	0	78023..78409	+	128	37519647	-	glr0078	-	hypothetical protein
79	 58.73	0	78478..79044	+	188	37519648	ycf4	gvip006	-	photosystem I assembly protein Ycf4
80	 63.83	0	79162..82194	+	1010	37519649	-	glr0080	-	putative alpha-mannosidase
81	 63.13	0	82256..82849	+	197	37519650	-	glr0081	-	hypothetical protein
82	 61.88	0	82929..84077	-	382	37519651	-	gll0082	-	glycosyltransferase
83	 61.69	0	84082..85326	-	414	37519652	-	gll0083	-	hypothetical protein
84	 65.27	0	85344..86129	-	261	37519653	recO	gll0084	-	DNA repair protein RecO
85	 66.05	0	86307..86954	+	215	37519654	rplC	gvip007	-	50S ribosomal protein L3
86	 63.71	0	86987..87628	+	213	37519655	rplD	gvip008	-	50S ribosomal protein L4
87	 59.08	0	87625..87927	+	100	37519656	rplW	gvip009	-	50S ribosomal protein L23
88	 63.54	0	88105..88680	+	191	37519657	-	glr0088	-	hypothetical protein
89	 62.22	0	88677..89216	-	179	37519658	-	gll0089	-	hypothetical protein
90	 59.87	0	89381..89851	+	156	37519659	-	glr0090	-	hypothetical protein
91	 64.86	0	89856..90407	-	183	37519660	-	gll0091	-	hypothetical protein
92	 65.42	0	90488..90808	+	106	37519661	-	glr0092	-	hypothetical protein
93	 66.81	0	90820..92208	+	462	37519662	-	glr0093	-	aminopeptidase P
94	 60.05	0	92607..94766	+	719	37519663	-	glr0094	-	hypothetical protein
95	 56.67	-1	94907..95146	+	79	37519664	-	gsr0095	-	cell growth regulatory protein
96	 53.27	-1	95140..95475	+	111	37519665	-	glr0096	-	cell growth regulatory protein
97	 58.02	0	95612..96085	-	157	37519666	-	gll0097	-	hypothetical protein
98	 60.50	0	96173..97906	+	577	37519667	-	glr0098	-	ABC transporter ATP-binding protein
99	 67.73	+1	97911..100268	-	785	37519668	-	gll0099	-	two-component hybrid sensor and regulator
100	 58.65	0	100300..101559	-	419	37519669	-	gll0100	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.