IslandPath Analysis: Bordetella petrii DSM 12804



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.59   STD DEV: 4.54
Bordetella petrii DSM 12804, complete genome - 1..5287950
5027 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.79	0	1..1437	+	478	163854305	dnaA	Bpet0001	-	chromosomal replication initiation protein
2	 62.61	0	1440..2549	+	369	163854306	dnaN	Bpet0002	-	DNA polymerase III subunit beta
3	 64.87	0	2640..5093	+	817	163854307	gyrB	Bpet0003	-	DNA gyrase subunit B
4	 64.03	0	5240..5542	+	100	163854308	-	Bpet0004	-	putative DNA-binding protein
5	 63.39	0	5542..6885	+	447	163854309	-	Bpet0005	-	HipA protein
6	 62.20	0	6999..7625	-	208	163854310	ycaC	Bpet0006	-	isochorismatase superfamily hydrolase
7	 68.43	0	7712..8506	-	264	163854311	-	Bpet0007	-	hypothetical protein
8	 68.95	0	8723..9640	+	305	163854312	-	Bpet0008	-	LysR family transcriptional regulator
9	 70.23	+1	9585..10370	-	261	163854313	bioD	Bpet0009	-	hypothetical protein
10	 71.79	+1	10363..11553	-	396	163854314	bioF	Bpet0010	-	8-amino-7-oxononanoate synthase
11	 70.62	+1	11555..12895	-	446	163854315	bioA	Bpet0011	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
12	 67.47	0	13423..13920	-	165	163854316	-	Bpet0012	-	putative thioesterase
13	 67.37	0	13930..14214	-	94	163854317	-	Bpet0013	-	putative acylphosphatase
14	 67.52	0	14294..15460	+	388	163854318	-	Bpet0014	-	L-lactate dehydrogenase
15	 63.95	0	15602..16375	+	257	163854319	GAF	Bpet0015	-	intracellular signaling protein
16	 66.58	0	16512..17657	+	381	163854320	ampH	Bpet0016	-	beta-lactamase/D-alanine carboxypeptidase
17	 64.66	0	17667..18860	+	397	163854321	-	Bpet0017	-	hypothetical protein
18	 66.10	0	18868..20457	+	529	163854322	-	Bpet0018	-	putative secreted protein
19	 68.11	0	20586..21416	+	276	163854323	-	Bpet0019	-	AraC family transcription regulator
20	 66.86	0	21454..22482	-	342	163854324	-	Bpet0020	-	hypothetical protein
21	 69.78	0	22655..23584	+	309	163854325	-	Bpet0021	-	2-dehydropantoate 2-reductase
22	 70.10	0	23673..24284	+	203	163854326	-	Bpet0022	-	hypothetical protein
23	 67.99	0	24301..24828	+	175	163854327	-	Bpet0023	-	hypothetical protein
24	 70.37	+1	25499..26200	-	233	163854328	ribB1	Bpet0024	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
25	 64.39	0	26543..27025	-	160	163854329	-	Bpet0025	-	hypothetical protein
26	 59.58	-1	27107..27727	-	206	163854331	-	Bpet0026	-	AsnC family transcriptional regulator
27	 69.26	0	27683..29494	+	603	163854330	ilvG1	Bpet0027	-	acetolactate synthase large subunit
28	 66.84	0	29605..30774	+	389	163854332	-	Bpet0028	-	putative acyl-CoA transferase/carnitine dehydratase
29	 66.67	0	30857..31834	+	325	163854333	bug1	Bpet0029	-	putative secreted protein
30	 67.92	0	31842..32636	+	264	163854334	-	Bpet0030	-	enoyl-CoA hydratase
31	 66.57	0	32643..33644	+	333	163854335	-	Bpet0031	-	LysR family transcriptional regulator
32	 69.10	0	34159..35595	-	478	163854336	-	Bpet0032	-	putative aldehyde dehydrogenase
33	 71.21	+1	35666..36457	-	263	163854337	idnO	Bpet0033	-	gluconate 5-dehydrogenase
34	 65.36	0	36469..39075	-	868	163854338	topB1	Bpet0034	-	DNA topoisomerase III
35	 71.69	+1	39138..41744	+	868	163854339	-	Bpet0035	-	hypothetical protein
36	 66.77	0	42051..43034	-	327	163854340	-	Bpet0036	-	IS1663 transposase
37	 73.06	+1	43321..44196	-	291	163854341	-	Bpet0037	-	aminoacyl-tRNA synthetase
38	 63.18	0	44200..44658	-	152	163854342	-	Bpet0038	-	hypothetical protein
39	 65.63	0	44854..46878	-	674	163854343	-	Bpet0039	-	TRAP transporter, 4TM/12TM fusion protein
40	 64.90	0	47122..48081	-	319	163854344	-	Bpet0040	-	TRAP transporter solute receptor TAXI family protein
41	 72.72	+1	48260..49399	+	379	163854345	-	Bpet0041	-	putative amino acid aldolase or racemase
42	 66.50	0	49497..50690	+	397	163854346	argM1	Bpet0042	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
43	 68.60	0	50942..52600	-	552	163854347	-	Bpet0043	-	AMP-dependent synthetase and ligase family protein
44	 72.69	+1	52597..53676	-	359	163854348	-	Bpet0044	-	putative aminoglycoside phosphotransferase
45	 67.32	0	53673..54899	-	408	163854349	acd1	Bpet0045	-	acyl-CoA dehydrogenase
46	 70.47	+1	54949..55710	-	253	163854350	kduD1	Bpet0046	-	2-deoxy-D-gluconate 3-dehydrogenase
47	 63.11	0	55729..56094	-	121	163854351	-	Bpet0047	-	hypothetical protein
48	 69.17	0	56130..57488	-	452	163854352	-	Bpet0048	-	hypothetical protein
49	 71.17	+1	57518..58495	-	325	163854353	bug2	Bpet0049	-	putative secreted protein
50	 72.20	+1	58521..60635	-	704	163854354	-	Bpet0050	-	Acyl-CoA synthetase
51	 68.11	0	60675..61646	-	323	163854355	bug3	Bpet0051	-	putative secreted protein
52	 70.73	+1	61717..62085	-	122	163854356	-	Bpet0052	-	hypothetical protein
53	 71.86	+1	62082..63236	-	384	163854357	-	Bpet0053	-	putative thiolase
54	 69.26	0	63229..63999	-	256	163854358	-	Bpet0054	-	IclR family transcriptional regulator
55	 70.11	0	64163..66196	-	677	163854359	accA1	Bpet0055	-	putative biotin carboxylase subunit of methylcrotonyl-CoA carboxylase
56	 67.97	0	66218..67825	-	535	163854360	accB1	Bpet0056	-	putative methylcrotonyl-CoA carboxylase subunit
57	 68.19	0	68009..69190	-	393	163854361	fadA1	Bpet0057	-	beta-ketoadipyl CoA thiolase
58	 66.29	0	69224..71062	-	612	163854362	aceK	Bpet0058	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
59	 64.38	0	71084..72262	-	392	163854363	ivd	Bpet0059	-	putative isovaleryl-CoA dehydrogenase
60	 67.60	0	72520..73698	+	392	163854364	-	Bpet0060	-	putative hydrolase
61	 68.58	0	73775..74767	+	330	163854365	bug4	Bpet0061	-	putative secreted protein
62	 71.17	+1	74778..75110	-	110	163854366	-	Bpet0062	-	hypothetical protein
63	 66.40	0	75146..75523	-	125	163854367	-	Bpet0063	-	MerR family transcriptional regulator
64	 66.58	0	75556..76656	+	366	163854368	-	Bpet0064	-	metallo-beta-lactamase family protein
65	 70.32	+1	76679..77335	-	218	163854369	-	Bpet0065	-	putative efflux protein
66	 67.09	0	77479..78669	+	396	163854370	metC1	Bpet0066	-	cystathionine beta-lyase
67	 65.40	0	78732..79361	-	209	163854371	dsbA	Bpet0067	-	thiol:disulfide interchange protein DsbA precursor
68	 71.83	+1	79437..80075	-	212	163854372	-	Bpet0068	-	hypothetical protein
69	 67.67	0	80085..81770	-	561	163854373	argS	Bpet0069	-	arginyl-tRNA synthetase
70	 67.72	0	82094..82474	+	126	163854374	-	Bpet0070	-	hypothetical protein
71	 69.18	0	82574..82891	+	105	163854375	-	Bpet0071	-	hypothetical protein
72	 64.92	0	82928..83728	-	266	163854376	ugpE1	Bpet0072	-	glycerol-3-phosphat transport system, permease component
73	 64.38	0	83725..84600	-	291	163854377	ugpA1	Bpet0073	-	glycerol-3-phosphat transport system, permease component
74	 64.35	0	84613..85908	-	431	163854378	ugpB1	Bpet0074	-	glycerol-3-phosphate-binding periplasmic protein, precursor
75	 69.18	0	85920..86993	-	357	163854379	-	Bpet0075	-	putative sugar ABC transporter, ATP-binding protein
76	 66.30	0	87098..87919	-	273	163854380	-	Bpet0076	-	putative cAMP phosphodiesterase
77	 70.69	+1	87982..89049	-	355	163854381	-	Bpet0077	-	ABC transporter, ATP-binding protein
78	 68.25	0	88986..89807	-	273	163854382	-	Bpet0078	-	ABC transporter, permease protein
79	 69.12	0	89821..90636	-	271	163854383	-	Bpet0079	-	binding-protein-dependent transport system, permease protein
80	 66.37	0	90667..91677	-	336	163854384	-	Bpet0080	-	ABC transporter periplasmic substrate-binding protein
81	 70.77	+1	91674..92720	-	348	163854385	-	Bpet0081	-	LacI family transcriptional regulator
82	 69.37	0	92970..94265	+	431	163854386	gatA1	Bpet0082	-	putative amidase
83	 65.03	0	94608..96314	-	568	163854387	leuA	Bpet0083	-	2-isopropylmalate synthase
84	 68.38	0	96684..97325	-	213	163854389	-	Bpet0084	-	hypothetical protein
85	 68.54	0	97324..98763	+	479	163854388	rpoN1	Bpet0085	-	RNA polymerase sigma-54 factor
86	 68.77	0	98862..99146	+	94	163854390	-	Bpet0086	-	putative bacterioferritin-associated ferredoxin
87	 56.39	-2	99508..99984	+	158	163854391	bfr	Bpet0087	-	bacterioferritin
88	 69.53	0	100070..100732	-	220	163854392	-	Bpet0088	-	hypothetical protein
89	 64.93	0	100765..102372	-	535	163854393	prfC	Bpet0089	-	peptide chain release factor 3
90	 66.98	0	102422..103051	-	209	163854394	rhtB1	Bpet0090	-	hypothetical protein
91	 78.73	+2	103103..103591	-	162	163854395	-	Bpet0091	-	putative ATP-dependent RNA helicase
92	 66.36	0	103609..104574	-	321	163854396	rhlE1	Bpet0092	-	putative ATP-dependent RNA helicase
93	 65.39	0	105128..105754	+	208	163854397	lemA	Bpet0093	-	LemA protein
94	 73.11	+1	105843..106649	+	268	163854398	-	Bpet0094	-	hypothetical protein
95	 69.04	0	106654..108042	-	462	163854399	-	Bpet0095	-	sensor histidine kinase
96	 66.67	0	108039..108701	-	220	163854400	-	Bpet0096	-	two-component response regulator
97	 66.17	0	108701..109105	-	134	163854401	-	Bpet0097	-	hypothetical protein
98	 68.27	0	109244..109555	+	103	163854402	-	Bpet0098	-	hypothetical protein
99	 69.73	0	109512..110981	+	489	163854403	-	Bpet0099	-	putative flavocytochrome
100	 69.25	0	110978..112216	-	412	163854404	-	Bpet0100	-	imidazolonepropionase
65.59	MEAN

4.54	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.