IslandPath Analysis: Alkalilimnicola ehrlichei MLHE-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.38   STD DEV: 4.14
Alkalilimnicola ehrlichei MLHE-1, complete genome - 1..3275944
2865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.27	0	75..1430	+	451	114319167	-	Mlg_0001	-	chromosomal replication initiator protein DnaA
2	 64.31	0	1651..2751	+	366	114319168	-	Mlg_0002	-	DNA polymerase III, beta subunit
3	 67.98	0	2816..3880	+	354	114319169	-	Mlg_0003	-	DNA replication and repair protein RecF
4	 63.19	-1	3952..6369	+	805	114319170	-	Mlg_0004	-	DNA gyrase subunit B
5	 70.41	0	6397..7170	+	257	114319171	-	Mlg_0005	-	HAD family hydrolase
6	 64.88	0	7163..8950	+	595	114319172	-	Mlg_0006	-	glycoside hydrolase 15-related
7	 66.31	0	9005..10393	+	462	114319173	-	Mlg_0007	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
8	 70.70	0	10399..11340	+	313	114319174	-	Mlg_0008	-	glucokinase
9	 69.03	0	11353..12114	-	253	114319175	-	Mlg_0009	-	phospholipid/glycerol acyltransferase
10	 70.64	0	12111..12689	-	192	114319176	-	Mlg_0010	-	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase
11	 70.03	0	12664..14745	-	693	114319177	-	Mlg_0011	-	glycine--tRNA ligase
12	 65.62	0	14738..15691	-	317	114319178	glyQ	Mlg_0012	-	glycyl-tRNA synthetase subunit alpha
13	 63.28	0	16030..17445	+	471	114319179	-	Mlg_0013	-	L-glutamine synthetase
14	 66.29	0	17555..18082	+	175	114319180	-	Mlg_0014	-	hypothetical protein
15	 66.57	0	18231..19283	+	350	114319181	-	Mlg_0015	-	signal transduction histidine kinase, nitrogen specific, NtrB
16	 67.66	0	19280..20686	+	468	114319182	-	Mlg_0016	-	nitrogen metabolism transcriptional regulator NtrC
17	 70.00	0	20902..21531	-	209	114319183	-	Mlg_0017	-	radical SAM domain-containing protein
18	 70.66	0	21528..22703	-	391	114319184	-	Mlg_0018	-	hypothetical protein
19	 66.06	0	22813..24474	-	553	114319185	-	Mlg_0019	-	chaperonin GroEL
20	 63.89	0	24517..24804	-	95	114319186	groES	Mlg_0020	-	co-chaperonin GroES
21	 65.87	0	25024..25398	+	124	114319187	-	Mlg_0021	-	CutA1 divalent ion tolerance protein
22	 68.94	0	25408..27252	+	614	114319188	-	Mlg_0022	-	cytochrome c biogenesis protein, transmembrane region
23	 66.27	0	27249..27752	+	167	114319189	-	Mlg_0023	-	redoxin domain-containing protein
24	 66.23	0	27880..28338	+	152	114319190	-	Mlg_0024	-	3-dehydroquinate dehydratase
25	 68.60	0	28338..28802	+	154	114319191	-	Mlg_0025	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
26	 66.29	0	28822..30165	+	447	114319192	-	Mlg_0026	-	acetyl-CoA carboxylase, biotin carboxylase
27	 67.53	0	30213..30788	+	191	114319193	-	Mlg_0027	-	YfaZ family protein
28	 71.11	0	30819..31628	-	269	114319194	-	Mlg_0028	-	hypothetical protein
29	 69.06	0	31748..32710	+	320	114319195	-	Mlg_0029	-	NAD-dependent epimerase/dehydratase
30	 72.22	+1	32714..33955	+	413	114319196	-	Mlg_0030	-	metal dependent phosphohydrolase
31	 74.03	+1	33968..35407	-	479	114319197	-	Mlg_0031	-	hypothetical protein
32	 67.24	0	35512..36552	-	346	114319198	-	Mlg_0032	-	aldo/keto reductase
33	 69.19	0	36586..37299	-	237	114319199	-	Mlg_0033	-	tRNA (guanine-N(7)-)-methyltransferase
34	 66.79	0	37301..38089	-	262	114319200	thiG	Mlg_0034	-	thiazole synthase
35	 68.02	0	38147..38368	-	73	114319201	-	Mlg_0035	-	thiamine biosynthesis protein ThiS
36	 63.85	0	39904..40293	-	129	114319202	-	Mlg_0037	-	hypothetical protein
37	 66.08	0	40293..41309	-	338	114319203	-	Mlg_0038	-	hypothetical protein
38	 69.38	0	41312..41827	-	171	114319204	-	Mlg_0039	-	hypothetical protein
39	 63.89	0	41926..43257	-	443	114319205	-	Mlg_0040	-	hypothetical protein
40	 66.67	0	43278..46577	-	1099	114319206	-	Mlg_0041	-	hypothetical protein
41	 66.56	0	46574..47473	-	299	114319207	-	Mlg_0042	-	hypothetical protein
42	 70.61	0	47470..48432	-	320	114319208	-	Mlg_0043	-	Rhs element Vgr protein
43	 65.88	0	49079..49588	+	169	114319209	-	Mlg_0045	-	hypothetical protein
44	 65.11	0	49623..51101	+	492	114319210	-	Mlg_0046	-	hypothetical protein
45	 68.07	0	51108..51536	+	142	114319211	-	Mlg_0047	-	hypothetical protein
46	 65.82	0	51556..53319	+	587	114319212	-	Mlg_0048	-	hypothetical protein
47	 67.27	0	53316..54302	+	328	114319213	-	Mlg_0049	-	hypothetical protein
48	 72.43	+1	54307..55017	+	236	114319214	-	Mlg_0050	-	FHA domain-containing protein
49	 66.49	0	55014..55586	+	190	114319215	-	Mlg_0051	-	hypothetical protein
50	 67.26	0	55586..56923	+	445	114319216	-	Mlg_0052	-	hypothetical protein
51	 67.89	0	56926..57741	+	271	114319217	-	Mlg_0053	-	hypothetical protein
52	 71.29	0	57738..59315	+	525	114319218	-	Mlg_0054	-	sigma-54 dependent trancsriptional regulator
53	 73.77	+1	59312..59959	+	215	114319219	-	Mlg_0055	-	hypothetical protein
54	 72.35	+1	59947..61389	+	480	114319220	-	Mlg_0056	-	ImpA domain-containing protein
55	 70.65	0	61425..65042	+	1205	114319221	-	Mlg_0057	-	ImcF domain-containing protein
56	 64.74	0	65285..65803	+	172	114319222	-	Mlg_0058	-	hypothetical protein
57	 71.33	0	65890..66189	+	99	114319223	-	Mlg_0059	-	PAAR repeat-containing protein
58	 58.83	-2	66332..66931	+	199	114319224	-	Mlg_0060	-	hypothetical protein
59	 69.76	0	67016..67855	+	279	114319225	-	Mlg_0061	-	diaminopimelate epimerase
60	 71.10	0	67913..68611	+	232	114319226	-	Mlg_0062	-	hypothetical protein
61	 72.02	+1	68618..69532	+	304	114319227	-	Mlg_0063	-	tyrosine recombinase XerC
62	 68.88	0	69593..70225	+	210	114319228	-	Mlg_0064	-	TetR family transcriptional regulator
63	 68.71	0	70272..71252	+	326	114319229	-	Mlg_0065	-	alcohol dehydrogenase
64	 67.57	0	71434..71985	+	183	114319230	-	Mlg_0066	-	ATP-dependent protease peptidase subunit
65	 66.44	0	72000..73322	+	440	114319231	hslU	Mlg_0067	-	ATP-dependent protease ATP-binding subunit
66	 68.01	0	73394..73765	+	123	114319232	-	Mlg_0068	-	hypothetical protein
67	 66.54	0	73769..74545	+	258	114319233	-	Mlg_0069	-	demethylmenaquinone methyltransferase
68	 75.40	+1	74547..75176	+	209	114319234	-	Mlg_0070	-	hypothetical protein
69	 67.99	0	75173..76834	+	553	114319235	-	Mlg_0071	-	2-octaprenylphenol hydroxylase
70	 71.22	0	76866..78752	-	628	114319236	-	Mlg_0072	-	arginine decarboxylase
71	 68.87	0	78872..79732	+	286	114319237	-	Mlg_0073	-	spermidine synthase
72	 68.61	0	79807..82380	+	857	114319238	-	Mlg_0074	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
73	 68.46	0	82412..82969	+	185	114319239	-	Mlg_0075	-	RDD domain-containing protein
74	 68.27	0	82991..83800	-	269	114319240	-	Mlg_0076	-	hypothetical protein
75	 74.81	+1	83797..84447	-	216	114319241	-	Mlg_0077	-	ABC transporter related
76	 72.93	+1	84577..87321	+	914	114319242	-	Mlg_0078	-	transcriptional activator domain-containing protein
77	 65.31	0	87516..88766	-	416	114319243	-	Mlg_0079	-	ammonium transporter
78	 62.83	-1	88829..89167	-	112	114319244	-	Mlg_0080	-	nitrogen regulatory protein P-II
79	 69.21	0	89410..89724	+	104	114319245	-	Mlg_0081	-	hypothetical protein
80	 75.10	+1	89788..91305	+	505	114319246	-	Mlg_0082	-	Mg chelatase, subunit ChlI
81	 71.17	0	91329..91883	-	184	114319247	-	Mlg_0083	-	putative cytochrome c
82	 66.45	0	92052..92966	-	304	114319248	-	Mlg_0084	-	acetylglutamate kinase
83	 64.29	0	93252..93461	-	69	114319249	-	Mlg_0085	-	hypothetical protein
84	 66.82	0	93478..94143	-	221	114319250	-	Mlg_0086	-	ribose-5-phosphate isomerase A
85	 65.74	0	94226..95740	+	504	114319251	-	Mlg_0087	-	threonine dehydratase
86	 71.58	+1	95778..96449	+	223	114319252	-	Mlg_0088	-	TetR family transcriptional regulator
87	 69.44	0	96485..97528	+	347	114319253	-	Mlg_0089	-	membrane-bound metal-dependent hydrolase
88	 69.70	0	98663..100147	+	494	114319254	-	Mlg_0090	-	oxidoreductase FAD/NAD(P)-binding subunit
89	 70.41	0	100152..101567	-	471	114319255	-	Mlg_0091	-	major facilitator transporter
90	 67.84	0	101600..102112	-	170	114319256	-	Mlg_0092	-	hypothetical protein
91	 70.41	0	102228..102761	+	177	114319257	-	Mlg_0093	-	transcription antitermination protein nusG
92	 64.39	0	103174..103569	-	131	114319258	-	Mlg_0094	-	invasion gene expression up-regulator, SirB
93	 69.92	0	103675..104442	+	255	114319259	-	Mlg_0095	-	UBA/THIF-type NAD/FAD binding protein
94	 70.83	0	104452..106131	-	559	114319260	-	Mlg_0096	-	peptidoglycan binding domain-containing protein
95	 71.23	0	106241..107095	+	284	114319261	-	Mlg_0097	-	peptidase S1 and S6, chymotrypsin/Hap
96	 59.51	-1	107272..107970	+	232	114319262	-	Mlg_0098	-	PEP motif-containing protein
97	 60.84	-1	108329..109117	-	262	114319263	-	Mlg_0099	-	hypothetical protein
98	 69.79	0	109155..110594	-	479	114319264	-	Mlg_0100	-	mannose-1-phosphate guanylyltransferase (GDP)
99	 69.75	0	110648..111748	-	366	114319265	-	Mlg_0101	-	hypothetical protein
100	 70.53	0	111745..112650	-	301	114319266	-	Mlg_0102	-	HPr kinase
67.38	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.