IslandPath Analysis: Archaeoglobus fulgidus DSM 4304



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 3.95
Archaeoglobus fulgidus DSM 4304, complete genome - 1..2178400
2420 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.78	-1	406..786	-	126	11497622	-	AF0001	-	hypothetical protein
2	 41.48	-1	3222..3749	-	175	11497623	-	AF0002	-	hypothetical protein
3	 42.42	-1	4290..4784	+	164	11497624	-	AF0003	-	hypothetical protein
4	 53.04	+1	5051..6811	+	586	11497625	-	AF0004	-	putative ATPase RIL
5	 48.99	0	6850..7443	+	197	11497626	-	AF0005	-	hypothetical protein
6	 51.50	0	7548..8180	+	210	11497627	mtaC-1	AF0006	-	corrinoid methyltransferase protein (mtaC-1)
7	 52.79	+1	8181..9434	+	417	11497628	-	AF0007	-	hypothetical protein
8	 52.26	0	9508..10770	+	420	11497629	oxlT-1	AF0008	-	oxalate/formate antiporter (oxlT-1)
9	 52.35	0	10739..11611	+	290	161511074	mtr	AF0009	-	tetrahydromethanopterin S-methyltransferase subunit H
10	 52.51	0	11613..13406	+	597	11497631	-	AF0010	-	hypothetical protein
11	 48.75	0	13406..14125	+	239	11497632	mtaC-2	AF0011	-	corrinoid methyltransferase protein (mtaC-2)
12	 52.68	0	14126..15376	+	416	11497633	-	AF0012	-	hypothetical protein
13	 53.58	+1	15396..16595	+	399	11497634	exuT	AF0013	-	hexuronate transporter (exuT)
14	 52.17	0	16691..17104	+	137	11497635	-	AF0014	-	hypothetical protein
15	 54.34	+1	17106..18581	+	491	11497636	putP-1	AF0015	-	proline permease (putP-1)
16	 53.40	+1	18636..19283	+	215	11497637	-	AF0016	-	hypothetical protein
17	 52.47	0	19287..21272	+	661	11497638	hbd-1	AF0017	-	3-hydroxyacyl-CoA dehydrogenase (hbd-1)
18	 55.53	+1	21295..22470	+	391	11497639	acaB-1	AF0018	-	3-ketoacyl-CoA thiolase (acaB-1)
19	 52.59	0	22475..22957	+	160	11497640	-	AF0019	-	hypothetical protein
20	 52.97	+1	22960..24222	+	420	11497641	caiB-1	AF0020	-	L-carnitine dehydratase (caiB-1)
21	 49.07	0	24261..25232	+	323	11497642	-	AF0021	-	signal-transducing histidine kinase
22	 49.28	0	25221..25496	-	91	11497643	-	AF0022	-	hypothetical protein
23	 54.13	+1	25503..27281	-	592	11497644	aor-1	AF0023	-	aldehyde ferredoxin oxidoreductase (aor-1)
24	 53.08	+1	27284..28534	-	416	11497645	-	AF0024	-	alcohol dehydrogenase, iron-containing
25	 56.09	+1	28539..29720	-	393	11497646	cynX	AF0025	-	cyanate transport protein (cynX)
26	 44.85	0	30082..30732	+	216	11497647	-	AF0026	-	hypothetical protein
27	 48.87	0	30788..31096	+	102	11497648	-	AF0027	-	hypothetical protein
28	 50.99	0	31091..32206	-	371	11497649	-	AF0028	-	Sep-tRNA:Cys-tRNA synthetase
29	 51.59	0	32238..32582	-	114	11497650	-	AF0029	-	hypothetical protein
30	 38.67	-2	32924..33073	+	49	11497651	-	AF0030	-	hypothetical protein
31	 52.94	+1	33137..34156	+	339	11497652	-	AF0031	-	hypothetical protein
32	 48.51	0	34153..34857	-	234	11497653	-	AF0032	-	hypothetical protein
33	 52.85	+1	34894..36297	+	467	11497654	acaA-1	AF0033	-	acyl carrier protein synthase (acaA-1)
34	 54.55	+1	36200..37453	+	417	11497655	acaB-2	AF0034	-	acetyl-CoA acetyltransferase
35	 52.22	0	37450..38349	-	299	11497656	-	AF0035	-	mannosephosphate isomerase, putative
36	 47.93	0	38739..39389	+	216	11497657	pcm-1	AF0036	-	L-isoaspartyl protein carboxyl methyltransferase (pcm-1)
37	 50.25	0	39244..40041	+	265	11497658	cobS-1	AF0037	-	cobalamin (5'-phosphate) synthase (cobS-1)
38	 48.62	0	40111..41196	+	361	11497659	-	AF0038	-	hypothetical protein
39	 47.39	0	41153..42262	+	369	11497660	-	AF0039	-	dolichol-P-glucose synthetase, putative
40	 46.52	0	42263..44044	+	593	11497661	-	AF0040	-	hypothetical protein
41	 41.60	-1	44093..44806	-	237	11497662	rfbB-1	AF0041	-	polysaccharide ABC transporter, ATP-binding protein (rfbB-1)
42	 39.22	-2	44803..45567	-	254	11497663	rfbA-1	AF0042	-	polysaccharide ABC transporter, permease protein (rfbA-1)
43	 39.29	-2	45631..46722	+	363	11497664	wbaZ-1	AF0043	-	first mannosyl transferase (wbaZ-1)
44	 44.87	0	46731..47969	+	412	11500013	gmd-1	AF0044m	-	GDP-D-mannose dehydratase (gmd-1)
45	 41.95	-1	47966..51607	+	1213	11497665	mtfA	AF0045	-	mannosyltransferase A (mtfA)
46	 37.13	-2	51610..53031	-	473	11497666	-	AF0046	-	hypothetical protein
47	 43.68	-1	53358..53792	+	144	11497667	-	AF0047	-	hypothetical protein
48	 50.72	0	54242..55483	-	413	11497668	-	AF0048	-	hypothetical protein
49	 51.90	0	55526..56764	-	412	11497669	-	AF0049	-	hypothetical protein
50	 51.08	0	56863..58062	+	399	11497670	-	AF0050	-	S-adenosylmethionine synthetase
51	 51.26	0	58049..59158	-	369	11497671	dapE-1	AF0051	-	succinyl-diaminopimelate desuccinylase (dapE-1)
52	 49.90	0	59291..59767	+	158	11497672	-	AF0052	-	hypothetical protein
53	 51.13	0	59760..60467	-	235	11497673	-	AF0053	-	hypothetical protein
54	 48.42	0	60485..60769	-	94	11497674	-	AF0054	-	hypothetical protein
55	 49.37	0	60772..61170	-	132	11497675	-	AF0055	-	hypothetical protein
56	 48.23	0	61191..61331	-	46	11497676	-	AF0056	-	hypothetical protein
57	 51.98	0	61335..61586	-	83	11497677	rpl37ae	AF0057	-	50S ribosomal protein L37Ae
58	 48.19	0	61625..62149	-	174	11497678	-	AF0058	-	hypothetical protein
59	 48.64	0	62116..62520	-	134	11497679	-	AF0059	-	hypothetical protein
60	 50.00	0	62618..62899	+	93	11497680	-	AF0060	-	hypothetical protein
61	 47.38	0	62899..63489	+	196	11497681	tmk	AF0061	-	thymidylate kinase (tmk)
62	 45.34	0	63463..64353	-	296	11497682	-	AF0062	-	hypothetical protein
63	 43.55	-1	64406..64591	-	61	11497683	-	AF0063	-	hypothetical protein
64	 46.15	0	64619..65281	+	220	11497684	-	AF0064	-	hypothetical protein
65	 42.51	-1	65075..65488	-	137	11497685	-	AF0065	-	hypothetical protein
66	 43.92	-1	65485..65673	-	62	11497686	-	AF0066	-	hypothetical protein
67	 38.28	-2	65799..66485	-	228	11497687	-	AF0067	-	hypothetical protein
68	 40.57	-2	66497..67450	-	317	11497688	-	AF0068	-	hypothetical protein
69	 39.12	-2	67451..67813	-	120	11497689	-	AF0069	-	hypothetical protein
70	 40.30	-2	67800..68861	-	353	11497690	-	AF0070	-	hypothetical protein
71	 39.34	-2	68830..71109	-	759	11497691	-	AF0071	-	ATP-dependent RNA helicase, putative
72	 46.97	0	71266..71991	-	241	11497692	-	AF0072	-	hypothetical protein
73	 43.68	-1	73048..73134	-	28	11497693	-	AF0073	-	hypothetical protein
74	 51.00	0	73396..74295	+	299	11497694	birA	AF0074	-	biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA)
75	 51.05	0	74322..75563	+	413	11497695	-	AF0075	-	hypothetical protein
76	 53.04	+1	75544..75954	+	136	11497696	-	AF0076	-	iron-sulfur cluster binding protein
77	 52.33	0	75951..77687	+	578	11497697	aor-2	AF0077	-	aldehyde ferredoxin oxidoreductase (aor-2)
78	 49.39	0	77684..78424	-	246	11497698	-	AF0078	-	hypothetical protein
79	 50.85	0	78494..79789	+	431	11497699	-	AF0079	-	hypothetical protein
80	 51.51	0	79817..80944	+	375	11497700	argD-1	AF0080	-	acetylornithine aminotransferase (argD-1)
81	 48.20	0	81167..81637	-	156	11497701	-	AF0081	-	hypothetical protein
82	 44.41	-1	81853..82701	+	282	11497702	-	AF0082	-	hypothetical protein
83	 53.23	+1	82710..82895	-	61	11497703	-	AF0083	-	hypothetical protein
84	 48.03	0	82867..83322	-	151	11497704	-	AF0084	-	hypothetical protein
85	 48.36	0	83298..83723	+	141	11497705	-	AF0085	-	hypothetical protein
86	 50.07	0	83680..84414	-	244	11497706	nrtB-1	AF0086	-	nitrate ABC transporter, permease protein (nrtB-1)
87	 49.73	0	84378..85109	-	243	11497707	nrtC-1	AF0087	-	nitrate ABC transporter, ATP-binding protein (nrtC-1)
88	 50.28	0	85106..86008	-	300	11497708	-	AF0088	-	thiamine biosynthesis protein, putative
89	 46.72	0	86366..87994	+	542	11497709	fadD-1	AF0089	-	long-chain-fatty-acid--CoA ligase (fadD-1)
90	 50.45	0	88042..88923	+	293	11497710	-	AF0090	-	dehydrase
91	 52.00	0	88920..89894	+	324	11497711	hpcE-1	AF0091	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1)
92	 52.42	0	89891..90613	-	240	11497712	cysA	AF0092	-	sulfate ABC transporter, ATP-binding protein (cysA)
93	 50.76	0	90591..91376	-	261	11497713	cysT	AF0093	-	sulfate ABC transporter, permease protein (cysT)
94	 48.40	0	91373..92401	-	342	11497714	-	AF0094	-	hypothetical protein
95	 42.20	-1	93028..93354	-	108	11497715	-	AF0095	-	hypothetical protein
96	 50.48	0	93365..93679	-	104	11497716	-	AF0096	-	hypothetical protein
97	 40.07	-2	93981..94277	-	98	11497717	-	AF0097	-	hypothetical protein
98	 39.81	-2	94327..94650	-	107	11497718	-	AF0098	-	hypothetical protein
99	 41.72	-1	94932..95396	-	154	11497719	-	AF0099	-	hypothetical protein
100	 42.55	-1	95387..95668	-	93	11497720	-	AF0100	-	hypothetical protein
48.73	MEAN

3.95	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.