IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.60	0	517..1878	+	453	82749778	dnaA	SAB0001	-	chromosomal replication initiation protein
2	 32.54	0	2156..3289	+	377	82749779	dnaN	SAB0002	-	DNA polymerase III subunit beta
3	 35.37	0	3670..3915	+	81	82749780	-	SAB0003	-	hypothetical protein
4	 33.69	0	3912..5024	+	370	82749781	recF	SAB0004	-	recombination protein F
5	 36.64	+1	5034..6968	+	644	82749782	gyrB	SAB0005	-	DNA gyrase subunit B
6	 36.90	+1	7005..9665	+	886	82749783	gyrA	SAB0006	-	DNA gyrase subunit A
7	 36.70	+1	9753..10583	-	276	82749784	-	SAB0007c	-	hypothetical protein
8	 37.10	+1	10890..12404	+	504	82749785	hutH	SAB0008	-	histidine ammonia-lyase
9	 34.42	0	12781..14067	+	428	82749786	serS	SAB0009	-	seryl-tRNA synthetase
10	 36.93	+1	14706..15401	+	231	82749787	-	SAB0010	-	hypothetical protein
11	 34.55	0	15398..15727	+	109	82749788	-	SAB0011	-	hypothetical protein
12	 35.40	0	16090..17058	+	322	82749789	-	SAB0012	-	homoserine-o-acetyltransferase
13	 32.32	0	17303..18289	+	328	82749790	-	SAB0013	-	hypothetical protein
14	 35.47	0	18304..20271	+	655	82749791	-	SAB0014	-	hypothetical protein
15	 31.10	0	20268..20714	+	148	82749792	rplI	SAB0015	-	50S ribosomal protein L9
16	 38.54	+1	20746..22146	+	466	82749793	dnaC	SAB0016	-	replicative DNA helicase
17	 36.37	+1	22426..23709	+	427	82749794	purA	SAB0017	-	adenylosuccinate synthetase
18	 36.30	0	25153..25860	+	235	82749795	yycF	SAB0018	-	two-component response regulator
19	 34.92	0	25873..27699	+	608	82749796	yycG	SAB0019	-	two-component sensor histidine kinase
20	 35.27	0	27683..29026	+	447	82749797	yycH	SAB0020	-	hypothetical protein
21	 32.70	0	29027..29815	+	262	82749798	yycI	SAB0021	-	hypothetical protein
22	 35.71	0	30204..31004	+	266	82749799	yycJ	SAB0022	-	hypothetical protein
23	 38.59	+1	31231..33549	+	772	82749800	-	SAB0023	-	5' nucleotidase
24	 40.00	+2	33918..34397	+	159	82749801	-	SAB0024	-	hypothetical protein
25	 23.67	-2	34735..35634	+	299	82749802	-	SAB0025	-	hypothetical protein
26	 29.49	-1	36930..37709	+	259	82749803	-	SAB0026	-	enterotoxin protein
27	 38.75	+1	37894..38373	-	159	82749804	-	SAB0027c	-	hypothetical protein
28	 31.48	0	38856..39611	-	251	82749805	-	SAB0028c	-	hypothetical protein
29	 31.46	0	39611..39877	-	88	82749806	-	SAB0029c	-	hypothetical protein
30	 31.93	0	40008..41075	+	355	82749807	-	SAB0030	-	hypothetical protein
31	 33.18	0	41106..42440	+	444	82749808	-	SAB0031	-	hydroxyacylglutathione hydrolase
32	 32.75	0	42459..43652	+	397	82749809	-	SAB0032	-	sulfide-quinone reductase
33	 39.11	+1	44316..45302	-	328	82749810	-	SAB0033c	-	hypothetical protein
34	 24.02	-2	45611..45814	+	67	82749811	-	SAB0034	-	hypothetical protein
35	 31.31	0	45864..46160	+	98	82749812	-	SAB0035	-	hypothetical protein
36	 34.70	0	46608..47339	+	243	82749813	-	SAB0036	-	hypothetical protein
37	 31.51	0	47495..48043	+	182	82749814	-	SAB0037	-	hypothetical protein
38	 33.64	0	48181..49167	+	328	82749815	plc	SAB0038	-	1-phosphatidylinositol phosphodiesterase
39	 29.05	-1	50209..50979	+	256	82749816	-	SAB0040	-	hypothetical protein
40	 33.07	0	51063..53300	+	745	82749817	-	SAB0041	-	transcriptional regulator
41	 37.07	+1	53451..54629	+	392	82749818	-	SAB0042	-	aminoacylase
42	 36.65	+1	54631..56019	+	462	82749819	-	SAB0043	-	antibiotic resistance-related transmembrane efflux protein
43	 35.73	0	56508..58175	-	555	82749820	-	SAB0044c	-	membrane transporter
44	 35.25	0	58494..60269	-	591	82749821	-	SAB0045c	-	myosin-crossreactive streptococcal antigen-like protein
45	 31.27	0	60443..61315	-	290	82749822	-	SAB0046c	-	membrane transporter
46	 29.83	0	61429..62826	+	465	82749823	-	SAB0047	-	transcriptional regulator
47	 29.96	0	63016..63489	+	157	82749824	-	SAB0048	-	hypothetical protein
48	 34.59	0	63751..65343	+	530	82749825	lldP	SAB0049	-	L-lactate permease
49	 27.49	-1	67420..68172	-	250	82749826	sarS	SAB0051c	-	transcriptional regulator SarS
50	 36.95	+1	68541..69536	-	331	82749827	sirC	SAB0052c	-	siderophore transport protein
51	 39.26	+1	69533..70528	-	331	82749828	sirB	SAB0053c	-	siderophore transport protein
52	 32.33	0	70544..71536	-	330	82749829	sirA	SAB0054c	-	iron-regulated lipoprotein
53	 36.49	+1	71767..72747	+	326	82749830	-	SAB0055	-	cysteine synthase A protein
54	 36.89	+1	72744..73754	+	336	82749831	-	SAB0056	-	ornithine cyclodeaminase protein
55	 35.21	0	73775..75529	+	584	82749832	-	SAB0057	-	siderophore biosynthesis protein
56	 38.58	+1	75522..76778	+	418	82749833	-	SAB0058	-	membrane transporter
57	 36.44	+1	76768..78504	+	578	82749834	-	SAB0059	-	siderophore biosynthesis protein
58	 35.92	0	78485..80263	+	592	82749835	-	SAB0060	-	siderophore biosynthesis protein
59	 39.90	+2	80238..81014	+	258	82749836	-	SAB0061	-	aldolase
60	 36.82	+1	81014..82216	+	400	82749837	-	SAB0062	-	diaminopimelate decarboxylase protein
61	 37.39	+1	82220..82984	+	254	82749838	-	SAB0063	-	hypothetical protein
62	 29.18	-1	83609..84403	+	264	82749839	-	SAB0065	-	hypothetical protein
63	 40.80	+2	84615..85391	+	258	82749840	-	SAB0066	-	acetoin reductase
64	 31.79	0	85737..86708	+	323	82749841	-	SAB0067	-	UDP-glucose 4-epimerase
65	 33.62	0	86671..87363	+	230	82749842	cap5M	SAB0068	-	capsular polysaccharide biosynthesis glycosyltransferase
66	 33.59	0	87573..88739	+	388	82749843	cap8H	SAB0069	-	capsular glycosyltransferase
67	 30.51	0	88720..89958	+	412	82749844	cps2H	SAB0070	-	hypothetical protein
68	 31.73	0	89948..91378	+	476	82749845	-	SAB0071	-	lipopolysaccharide flipase protein
69	 35.17	0	91647..92246	+	199	82749846	sodM	SAB0072	-	manganese/iron superoxide dismutase
70	 34.99	0	92615..93340	+	241	82749847	-	SAB0073	-	surface protein
71	 35.22	0	93531..94271	-	246	82749848	-	SAB0074c	-	transcriptional regulator
72	 37.57	+1	94522..95229	+	235	82749849	deoD1	SAB0075	-	purine nucleoside phosphorylase
73	 31.86	0	95230..96588	+	452	82749850	-	SAB0076	-	membrane transporter
74	 39.97	+2	96669..97331	+	220	82749851	deoC1	SAB0077	-	deoxyribose-phosphate aldolase 1
75	 36.90	+1	97359..98537	+	392	82749852	drm	SAB0078	-	phosphopentomutase
76	 21.33	-2	98761..98985	-	74	82749853	-	SAB0079c	-	hypothetical protein
77	 29.63	-1	99008..99547	-	179	82749854	-	SAB0080c	-	hypothetical protein
78	 36.64	+1	99992..100807	-	271	82749855	-	SAB0081c	-	phosphonate ABC transporter permease
79	 34.50	0	101604..102377	-	257	82749856	-	SAB0083c	-	transport system protein
80	 30.83	0	102591..103547	-	318	82749857	-	SAB0084c	-	transport protein
81	 36.76	+1	103777..105321	+	514	82749858	-	SAB0085	-	hypothetical protein
82	 36.35	+1	105372..106865	+	497	82749859	cpdB	SAB0086	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
83	 28.32	-1	107836..109011	+	391	82749860	-	SAB0088	-	transcriptional regulator
84	 36.05	0	109399..112008	+	869	82749861	-	SAB0089	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
85	 29.45	-1	112353..113021	+	222	82749862	capA	SAB0090	-	capsular polysaccharide synthesis enzyme CapA
86	 32.90	0	113037..113723	+	228	82749863	capB	SAB0091	-	capsular polysaccharide synthesis enzyme CapB
87	 32.03	0	113726..114490	+	254	82749864	capC	SAB0092	-	capsular polysaccharide synthesis enzyme CapC
88	 34.92	0	114510..116333	+	607	82749865	capD	SAB0093	-	capsular polysaccharide synthesis enzyme CapD
89	 34.21	0	116323..117351	+	342	82749866	capE	SAB0094	-	capsular polysaccharide synthesis enzyme CapE
90	 34.50	0	117364..118473	+	369	82749867	capF	SAB0095	-	capsular polysaccharide synthesis enzyme CapF
91	 33.60	0	118477..119601	+	374	82749868	capG	SAB0096	-	capsular polysaccharide synthesis enzyme CapG
92	 27.31	-1	119604..120683	+	359	82749869	cap8H	SAB0097	-	capsular polysaccharide synthesis enzyme CapH
93	 28.75	-1	120676..122070	+	464	82749870	cap8I	SAB0098	-	capsular polysaccharide synthesis enzyme CapI
94	 32.62	0	122067..122624	+	185	82749871	cap8J	SAB0099	-	capsular polysaccharide synthesis enzyme CapJ
95	 27.20	-1	122633..123871	+	412	82749872	cap8K	SAB0100	-	capsular polysaccharide synthesis enzyme CapK
96	 35.16	0	123905..125110	+	401	82749873	capL	SAB0101	-	capsular polysaccharide synthesis enzyme CapL
97	 32.08	0	125121..125678	+	185	82749874	capM	SAB0102	-	capsular polysaccharide synthesis enzyme CapM
98	 33.11	0	125678..126565	+	295	82749875	capN	SAB0103	-	capsular polysaccharide synthesis enzyme CapN
99	 34.05	0	126619..127881	+	420	82749876	capO	SAB0104	-	capsular polysaccharide synthesis enzyme CapO
100	 36.14	0	127928..129103	+	391	82749877	capP	SAB0105	-	capsular polysaccharide synthesis enzyme CapP
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.