IslandPath Analysis: Dehalococcoides ethenogenes 195



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.76   STD DEV: 4.21
Dehalococcoides ethenogenes 195, complete genome - 1..1469720
1580 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.14	+1	261..1598	+	445	57233687	dnaA	DET0001	-	chromosomal replication initiator protein DnaA
2	 53.02	+1	1924..3198	+	424	57233686	obgE	DET0002	-	GTPase ObgE
3	 50.41	0	3186..3800	+	204	57233677	nadD	DET0003	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
4	 51.53	0	3881..5809	-	642	57233676	gyrB	DET0004	-	DNA gyrase, B subunit
5	 52.22	0	6013..8199	-	728	57233675	relA	DET0005	-	GTP pyrophosphokinase
6	 52.67	0	8328..9584	+	418	57233674	hisS	DET0006	-	histidyl-tRNA synthetase
7	 51.63	0	9581..10744	+	387	57233673	-	DET0007	-	hypothetical protein
8	 52.31	0	10741..11367	-	208	57233672	-	DET0008	-	hypothetical protein
9	 49.08	0	11400..12320	-	306	57233671	ilvE	DET0009	-	branched-chain amino acid aminotransferase
10	 41.67	-1	12308..12463	+	51	57233661	-	DET0010	-	hypothetical protein
11	 52.43	0	12471..13643	-	390	57233660	-	DET0011	-	DNA polymerase IV, putative
12	 54.50	+1	13643..13831	-	62	57233659	-	DET0012	-	hypothetical protein
13	 50.92	0	13903..14715	-	270	57233658	pyrF	DET0013	-	orotidine 5'-phosphate decarboxylase
14	 50.00	0	14863..15558	+	231	57233657	-	DET0014	-	hypothetical protein
15	 49.18	0	15597..16391	+	264	57233656	-	DET0015	-	putative lipoprotein
16	 53.11	+1	16437..17756	+	439	57233655	-	DET0016	-	folylpolyglutamate synthetase
17	 47.22	0	17736..17951	-	71	57233654	-	DET0017	-	hypothetical protein
18	 46.21	0	17965..18228	-	87	57233653	-	DET0018	-	hypothetical protein
19	 54.76	+1	18528..18989	+	153	57233644	dtd	DET0019	-	D-tyrosyl-tRNA deacylase
20	 48.25	0	19041..19469	+	142	57233643	-	DET0020	-	FUR family transcriptional regulator
21	 46.61	0	19524..20276	-	250	57233642	-	DET0021	-	hypothetical protein
22	 50.90	0	20379..20765	+	128	57233641	-	DET0022	-	hypothetical protein
23	 46.81	0	20846..20986	-	46	57233640	-	DET0023	-	hypothetical protein
24	 51.76	0	21043..23430	-	795	57233639	-	DET0024	-	DNA internalization-related competence protein ComEC/Rec2
25	 50.10	0	23427..23927	-	166	57233638	-	DET0025	-	competence protein ComEA, putative
26	 49.40	0	24098..24763	-	221	57233637	-	DET0026	-	potassium uptake protein, putative
27	 49.63	0	24768..25172	-	134	57233630	-	DET0027	-	potassium uptake protein, putative
28	 46.15	0	25176..25604	-	142	57233629	-	DET0028	-	universal stress protein
29	 51.80	0	25680..27125	-	481	57233628	-	DET0029	-	Trk system potassium uptake protein, putative
30	 51.65	0	27129..28493	-	454	57233627	trkA	DET0030	-	potassium transporter peripheral membrane component
31	 44.44	-1	28497..28649	-	50	57233626	-	DET0031	-	hypothetical protein
32	 47.53	0	28782..29732	-	316	57233625	-	DET0032	-	cation efflux family protein
33	 48.57	0	29881..30510	+	209	57233624	-	DET0033	-	hypothetical protein
34	 53.59	+1	30503..31504	+	333	57233623	-	DET0034	-	phosphate transporter
35	 50.56	0	31501..32121	-	206	57233615	gmk	DET0035	-	guanylate kinase
36	 49.83	0	32099..32389	-	96	57233614	-	DET0036	-	hypothetical protein
37	 55.12	+1	32598..33446	+	282	57233613	-	DET0037	-	ferredoxin--NADP(+) reductase subunit alpha
38	 53.15	+1	33439..34836	+	465	57233612	gltA	DET0038	-	putative oxidoreductase
39	 46.01	0	34833..35045	-	70	57233611	-	DET0039	-	hypothetical protein
40	 51.69	0	35156..35689	-	177	57233610	-	DET0040	-	hypothetical protein
41	 54.44	+1	35760..36266	-	168	57233609	-	DET0041	-	quinone methlytransferase
42	 48.39	0	36271..36363	-	30	57233608	-	DET0042	-	hypothetical protein
43	 46.67	0	36374..36568	-	64	57233599	-	DET0043	-	hypothetical protein
44	 52.69	0	36711..37082	+	123	57233598	-	DET0044	-	hypothetical protein
45	 54.36	+1	37216..37662	+	148	57233597	-	DET0045	-	redox family protein
46	 53.08	+1	37659..38762	-	367	57233596	-	DET0046	-	translation-associated GTPase
47	 51.42	0	38985..40184	+	399	57233595	-	DET0047	-	DNA polymerase III delta subunit-related protein
48	 51.96	0	40186..40797	+	203	57233594	-	DET0048	-	hypothetical protein
49	 56.38	+1	40831..41841	+	336	57233593	-	DET0049	-	ROK family protein
50	 53.13	+1	41957..44572	+	871	57233592	alaS	DET0050	-	alanyl-tRNA synthetase
51	 51.24	0	44619..45020	+	133	57233582	-	DET0051	-	hypothetical protein
52	 53.10	+1	45042..46220	+	392	57233581	tgt	DET0052	-	queuine tRNA-ribosyltransferase
53	 52.41	0	46311..47453	+	380	57233580	-	DET0053	-	alcohol dehydrogenase, iron-containing
54	 44.44	-1	50873..51034	+	53	57233579	-	DET0056	-	hypothetical protein
55	 52.16	0	51068..53542	+	824	57233578	clpC	DET0057	-	ATP-dependent Clp protease, ATP-binding subunit ClpC
56	 52.84	0	53762..55150	+	462	57233577	radA	DET0058	-	DNA repair protein RadA
57	 51.61	0	55137..55820	+	227	57233576	ispD	DET0059	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
58	 55.27	+1	55826..56299	+	157	57233568	ispF	DET0060	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
59	 50.62	0	56303..57679	+	458	57233567	cysS	DET0061	-	cysteinyl-tRNA synthetase
60	 45.98	0	57770..59398	-	542	57235097	-	DET0063	-	resolvase domain-containing protein
61	 40.41	-1	59395..60327	-	310	57233566	-	DET0064	-	hypothetical protein
62	 53.31	+1	60943..61803	-	286	57233565	-	DET0065	-	virulence-related protein
63	 51.54	0	61934..63169	-	411	57233564	-	DET0066	-	DNA methylase
64	 53.76	+1	63144..64328	-	394	57233563	metK-1	DET0067	-	S-adenosylmethionine synthetase
65	 45.45	0	64901..64999	-	32	57233562	-	DET0068	-	hypothetical protein
66	 55.18	+1	64990..65346	-	118	57233561	-	DET0069	-	HNH endonuclease domain-containing protein
67	 47.59	0	65454..65888	-	144	57233560	-	DET0070	-	hypothetical protein
68	 52.20	0	66131..67672	-	513	57233543	-	DET0071	-	SNF2 family helicase
69	 51.67	0	67896..70169	-	757	57233571	-	DET0072	-	phage/plasmid DNA primase, putative
70	 48.33	0	70495..70914	-	139	57233570	-	DET0073	-	hypothetical protein
71	 52.86	0	70995..72935	-	646	57233569	-	DET0074	-	family A DNA-dependent DNA polymerase
72	 46.31	0	73164..74357	+	397	57233559	-	DET0075	-	hypothetical protein
73	 45.95	0	75226..75843	+	205	57233558	-	DET0076	-	resolvase domain-containing protein
74	 44.19	-1	76009..76266	+	85	57233557	-	DET0077	-	hypothetical protein
75	 42.46	-1	76921..77205	-	94	57233556	-	DET0078	-	trichloroethene reductive dehalogenase anchoring protein, putative
76	 48.11	0	77229..78893	-	554	57233555	tceA	DET0079	-	trichloroethene reductive dehalogenase
77	 34.83	-2	79177..79710	+	177	57233554	-	DET0080	-	hypothetical protein
78	 38.65	-2	79906..80883	-	325	57233553	-	DET0081	-	hypothetical protein
79	 50.19	0	81781..82047	-	88	57233552	-	DET0083	-	ISDet1, transposase orfA
80	 43.30	-1	82185..82475	+	96	57235096	-	DET0084	-	hypothetical protein
81	 38.31	-2	82975..83436	-	153	57233551	-	DET0085	-	hypothetical protein
82	 34.95	-2	83436..83621	-	61	57233550	-	DET0086	-	hipB protein, putative
83	 47.50	0	83691..85808	-	705	57233549	-	DET0087	-	hypothetical protein
84	 45.67	0	85832..86293	+	153	57233548	-	DET0088	-	reductive dehalogenase domain-containing protein
85	 40.96	-1	86386..87237	+	283	57233547	-	DET0089	-	radical SAM domain-containing protein
86	 44.24	-1	87234..88049	+	271	57233546	-	DET0090	-	radical SAM domain-containing protein
87	 44.32	-1	88197..88715	+	172	57233545	-	DET0091	-	hypothetical protein
88	 42.33	-1	88814..89524	+	236	57233544	-	DET0092	-	LuxR family DNA-binding response regulator
89	 44.44	-1	89695..89820	+	41	57233542	-	DET0093	-	hypothetical protein
90	 47.18	0	89828..90022	-	64	57233541	-	DET0094	-	hypothetical protein
91	 52.73	0	90038..92068	-	676	57233540	feoB	DET0095	-	ferrous iron transport protein B
92	 51.46	0	92065..92373	-	102	57233539	-	DET0096	-	feoA family protein
93	 50.63	0	92373..93089	-	238	57233538	-	DET0097	-	iron dependent repressor, putative
94	 43.79	-1	93341..93646	-	101	57233537	-	DET0098	-	hypothetical protein
95	 51.77	0	93748..94902	-	384	57233536	-	DET0099	-	mobA family protein
96	 50.87	0	94903..95592	-	229	57233535	-	DET0100	-	hypothetical protein
97	 52.48	0	95615..98716	-	1033	57233534	-	DET0101	-	molybdopterin oxidoreductase
98	 51.35	0	98820..100001	-	393	57233533	-	DET0102	-	molybdopterin oxidoreductase, membrane subunit, putative
99	 54.21	+1	100022..100960	-	312	57233532	-	DET0103	-	molybdopterin oxidoreductase, iron-sulfur binding subunit, putative
100	 49.04	0	101430..102416	+	328	57233531	-	DET0104	-	hypothetical protein
48.76	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.