IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.91   STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.85	0	2..994	+	330	126464914	-	Smar_0001	-	PP-loop domain-containing protein
2	 40.00	+1	1055..1699	+	214	126464915	-	Smar_0002	-	cobalamin (vitamin B12) biosynthesis CbiM protein
3	 36.43	0	1706..1996	+	96	126464916	-	Smar_0003	-	cobalamin biosynthesis protein
4	 30.69	-1	1993..2787	+	264	126464917	-	Smar_0004	-	cobalt transport protein
5	 32.45	-1	2774..3451	+	225	126464918	-	Smar_0005	-	ABC transporter related
6	 37.53	0	3514..3918	+	134	126464919	-	Smar_0006	-	CopG family transcriptional regulator
7	 39.03	0	3934..4863	-	309	126464920	-	Smar_0007	-	6-phosphofructokinase / inosine-guanosine kinase / cytidine kinase
8	 37.46	0	5154..6293	-	379	126464921	-	Smar_0008	-	FAD dependent oxidoreductase
9	 35.21	0	6300..6566	-	88	126464922	-	Smar_0009	-	BFD/(2Fe-2S)-binding domain-containing protein
10	 41.77	+1	6563..7048	-	161	126464923	-	Smar_0010	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
11	 39.80	+1	7038..8522	-	494	126464924	-	Smar_0011	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
12	 38.71	0	8683..9723	+	346	126464925	-	Smar_0012	-	hydrogenase expression/formation protein HypE
13	 38.16	0	9785..10012	+	75	126464926	-	Smar_0013	-	hydrogenase assembly chaperone hypC/hupF
14	 33.82	0	10101..13190	-	1029	126464927	-	Smar_0014	-	glycosyl hydrolase 38 protein
15	 36.59	0	13400..15736	+	778	126464928	-	Smar_0015	-	(NiFe) hydrogenase maturation protein HypF
16	 33.66	0	15728..17872	-	714	126464929	-	Smar_0016	-	hypothetical protein
17	 35.40	0	17963..18397	-	144	126464930	-	Smar_0017	-	transcriptional regulator, TrmB
18	 41.57	+1	18538..19035	+	165	126464931	-	Smar_0018	-	NADH-quinone oxidoreductase, B subunit
19	 33.11	0	19041..19487	+	148	126464932	-	Smar_0019	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
20	 39.80	+1	19492..20712	+	406	126464933	-	Smar_0020	-	NADH-ubiquinone oxidoreductase, chain 49kDa
21	 35.11	0	21089..21370	+	93	126464934	-	Smar_0022	-	multiple resistance and pH regulation protein F
22	 43.26	+2	21370..21762	+	130	126464935	-	Smar_0023	-	monovalent cation/proton antiporter, MnhG/PhaG subunit
23	 37.08	0	21759..22025	+	88	126464936	-	Smar_0024	-	hypothetical protein
24	 38.99	0	22022..22816	+	264	126464937	-	Smar_0025	-	Na+/H+ antiporter MnhB subunit-related protein
25	 39.17	0	22813..23223	+	136	126464938	-	Smar_0026	-	NADH-ubiquinone oxidoreductase, chain 4L
26	 34.72	0	23228..23731	+	167	126464939	-	Smar_0027	-	membrane bound protein complex subunit mbxA
27	 37.11	0	23750..25339	+	529	126464940	-	Smar_0028	-	putative monovalent cation/H+ antiporter subunit D
28	 34.71	0	25364..25726	+	120	126464941	-	Smar_0029	-	hypothetical protein
29	 36.57	0	25733..26722	+	329	126464942	-	Smar_0030	-	respiratory-chain NADH dehydrogenase, subunit 1
30	 32.17	-1	26873..28078	+	401	126464943	-	Smar_0031	-	cytochrome c biogenesis protein, transmembrane region
31	 30.50	-1	28095..28907	-	270	126464944	-	Smar_0032	-	thioredoxin/glutaredoxin-like protein
32	 37.18	0	28987..29871	-	294	126464945	-	Smar_0033	-	hypothetical protein
33	 39.02	0	29876..30139	-	87	126464946	-	Smar_0034	-	hypothetical protein
34	 36.74	0	30280..30837	+	185	126464947	-	Smar_0035	-	hypothetical protein
35	 34.62	0	30817..31206	-	129	126464948	-	Smar_0036	-	hypothetical protein
36	 36.14	0	31392..31997	-	201	126464949	-	Smar_0037	-	nitroreductase
37	 36.52	0	32067..32726	+	219	126464950	-	Smar_0038	-	hypothetical protein
38	 32.50	-1	32918..33634	+	238	126464951	-	Smar_0039	-	hypothetical protein
39	 33.25	0	33663..34871	+	402	126464952	-	Smar_0040	-	ABC transporter related
40	 27.22	-2	34900..35373	+	157	126464953	-	Smar_0041	-	hypothetical protein
41	 31.37	-1	35363..35719	-	118	126464954	-	Smar_0042	-	methylated-DNA--protein-cysteine methyltransferase
42	 38.86	0	35911..36471	+	186	126464955	-	Smar_0043	-	rubrerythrin
43	 33.59	0	36643..38610	+	655	126464956	-	Smar_0044	-	serine proteases-like protein
44	 38.14	0	38711..39874	+	387	126464957	-	Smar_0045	-	iron-containing alcohol dehydrogenase
45	 41.27	+1	39982..40359	+	125	126464958	-	Smar_0046	-	desulfoferrodoxin, ferrous iron-binding region
46	 34.53	0	40383..40715	+	110	126464959	-	Smar_0047	-	hypothetical protein
47	 32.65	0	40712..41152	+	146	126464960	-	Smar_0048	-	AsnC family transcriptional regulator
48	 37.58	0	41161..42525	-	454	126464961	-	Smar_0049	-	phosphomethylpyrimidine kinase
49	 35.87	0	42617..44077	+	486	126464962	-	Smar_0050	-	ABC transporter related
50	 35.06	0	44074..44769	+	231	126464963	-	Smar_0051	-	cobalt transport protein
51	 40.32	+1	44758..45573	-	271	126464964	-	Smar_0052	-	ribulose-1,5-biphosphate synthetase
52	 41.85	+1	45658..46197	+	179	126464965	-	Smar_0053	-	hypothetical protein
53	 34.09	0	46277..46936	+	219	126464966	-	Smar_0054	-	TenA family transcription regulator
54	 36.90	0	48331..49452	-	373	126464967	-	Smar_0055	-	hypothetical protein
55	 33.09	0	49456..50676	-	406	126464968	-	Smar_0056	-	beta-lactamase domain-containing protein
56	 37.72	0	50784..51878	-	364	126464969	-	Smar_0057	-	peptidase M42 family protein
57	 40.96	+1	52030..52737	-	235	126464970	-	Smar_0058	-	1-Cys peroxiredoxin / 3-Cys thioredoxin peroxidase
58	 38.74	0	52911..53132	+	73	126464971	-	Smar_0059	-	hypothetical protein
59	 37.35	0	53248..54069	+	273	126464972	-	Smar_0060	-	MscS mechanosensitive ion channel
60	 35.63	0	54179..55831	+	550	126464973	-	Smar_0061	-	metal dependent phosphohydrolase
61	 32.75	0	55828..56169	-	113	126464974	-	Smar_0062	-	hypothetical protein
62	 37.33	0	56247..57047	-	266	126464975	-	Smar_0063	-	hypothetical protein
63	 35.70	0	57054..57857	-	267	126464976	-	Smar_0064	-	hypothetical protein
64	 38.04	0	57854..58852	-	332	126464977	-	Smar_0065	-	ABC transporter related
65	 38.40	0	59041..62217	+	1058	126464978	-	Smar_0066	-	isoleucyl-tRNA synthetase
66	 39.92	+1	62443..62685	+	80	126464979	-	Smar_0067	-	AbrB family transcriptional regulator
67	 31.80	-1	62664..63119	+	151	126464980	-	Smar_0068	-	PilT domain-containing protein
68	 35.56	0	63200..63604	+	134	126464981	-	Smar_0069	-	cytidine deaminase
69	 36.44	0	63647..64096	+	149	126464982	-	Smar_0070	-	hypothetical protein
70	 36.34	0	64701..65663	+	320	126464983	-	Smar_0071	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
71	 31.33	-1	65656..66402	+	248	126464984	-	Smar_0072	-	binding-protein-dependent transport systems inner membrane component
72	 37.72	0	66436..66891	-	151	126464985	-	Smar_0073	-	hypothetical protein
73	 34.43	0	66983..68254	+	423	126464986	-	Smar_0074	-	metallophosphoesterase
74	 32.73	0	68238..69563	+	441	126464987	-	Smar_0075	-	hypothetical protein
75	 36.67	0	69569..71575	+	668	126464988	-	Smar_0076	-	hypothetical protein
76	 31.85	-1	71572..74070	+	832	126464989	-	Smar_0077	-	SMC domain-containing protein
77	 34.32	0	74125..75039	+	304	126464990	-	Smar_0078	-	hypothetical protein
78	 37.67	0	75053..76228	-	391	126464991	-	Smar_0079	-	hypothetical protein
79	 34.89	0	76303..77007	-	234	126464992	-	Smar_0080	-	HAD family hydrolase
80	 36.25	0	77133..78299	+	388	126464993	-	Smar_0081	-	sodium/hydrogen exchanger
81	 33.02	0	78305..78622	+	105	126464994	-	Smar_0082	-	hypothetical protein
82	 36.19	0	78679..79902	+	407	126464995	-	Smar_0083	-	IS605 family transposase OrfB
83	 38.93	0	80139..81674	-	511	126464996	-	Smar_0084	-	nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase
84	 35.53	0	82046..83275	-	409	126464997	-	Smar_0085	-	glycosyl transferase, group 1
85	 35.78	0	83385..83957	+	190	126464998	-	Smar_0086	-	transcriptional regulator, TrmB
86	 37.01	0	83999..84433	+	144	126464999	-	Smar_0087	-	hypothetical protein
87	 39.20	0	84430..85503	-	357	126465000	-	Smar_0088	-	ABC transporter related
88	 35.85	0	85511..86383	-	290	126465001	-	Smar_0089	-	binding-protein-dependent transport systems inner membrane component
89	 36.71	0	86380..87297	-	305	126465002	-	Smar_0090	-	binding-protein-dependent transport systems inner membrane component
90	 39.31	0	87323..88594	-	423	126465003	-	Smar_0091	-	extracellular solute-binding protein
91	 36.99	0	88808..89791	-	327	126465004	-	Smar_0092	-	dihydrodipicolinate reductase
92	 36.38	0	90033..90491	-	152	126465005	-	Smar_0093	-	thioredoxin domain-containing protein
93	 41.59	+1	90597..91868	+	423	126465006	-	Smar_0094	-	L-threonine synthase
94	 30.32	-1	91915..92412	-	165	126465007	-	Smar_0095	-	hypothetical protein
95	 35.00	0	92805..95918	-	1037	126465008	-	Smar_0096	-	DEAD/DEAH box helicase domain-containing protein
96	 32.26	-1	96044..97162	-	372	126465009	-	Smar_0097	-	glycosidase, PH1107-related
97	 38.94	0	97438..98739	-	433	126465010	-	Smar_0098	-	tryptophan synthase subunit beta
98	 30.28	-1	98814..99827	-	337	126465011	-	Smar_0099	-	hypothetical protein
99	 36.92	0	100061..101230	+	389	126465012	-	Smar_0100	-	aspartate aminotransferase
100	 32.86	0	101253..101675	-	140	126465013	-	Smar_0101	-	hypothetical protein
35.91	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.