IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.89   STD DEV: 4.02
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome I, complete sequence - 1..3603977
3277 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.17	0	1..1875	-	624	189909571	gidA	LBF_0001	-	Glucose inhibited division protein A
2	 41.02	0	2045..2968	+	307	189909572	ilvE	LBF_0002	-	Branched-chain amino acid aminotransferase
3	 38.69	0	2975..3907	+	310	189909573	dnaX-1	LBF_0003	-	DNA polymerase III gamma and tau subunits
4	 39.44	0	4188..5513	+	441	189909574	dnaA	LBF_0004	-	Chromosomal replication initiator protein
5	 36.46	0	5760..6878	+	372	189909575	dnaN	LBF_0005	-	DNA-directed DNA polymerase, beta subunit
6	 35.69	0	6878..7981	+	367	189909576	recF	LBF_0006	-	Recombinational DNA repair ATPase
7	 36.11	0	7978..8301	+	107	189909577	-	LBF_0007	-	hypothetical protein
8	 40.57	0	8380..10299	+	639	189909578	gyrB	LBF_0008	-	DNA gyrase subunit B
9	 40.17	0	10319..12850	+	843	189909579	gyrA	LBF_0009	-	DNA gyrase subunit A
10	 37.48	0	12864..13877	+	337	189909580	-	LBF_0010	-	tRNA-dihydrouridine synthase
11	 39.58	0	13888..14271	+	127	189909581	-	LBF_0011	-	hypothetical protein
12	 42.78	0	14386..14967	-	193	189909582	lipL21	LBF_0012	-	LipL21 lipoprotein
13	 33.21	-1	15097..16674	+	525	189909583	-	LBF_0013	-	hypothetical protein
14	 30.97	-1	16655..17542	+	295	189909584	-	LBF_0014	-	Transcriptional regulator
15	 35.59	0	17521..18630	-	369	189909585	holA	LBF_0015	-	DNA-directed DNA polymerase, delta subunit
16	 36.46	0	18896..19471	-	191	189909586	-	LBF_0016	-	Nucleotide-binding protein
17	 37.98	0	19496..19753	+	85	189909587	-	LBF_0017	-	Hypothetical lipoprotein
18	 41.06	0	19750..20487	+	245	189909588	-	LBF_0018	-	Short chain dehydrogenase
19	 34.76	-1	20499..21131	+	210	189909589	-	LBF_0019	-	Translation factor, SUA5 family
20	 35.72	0	21123..22127	-	334	189909590	capA	LBF_0020	-	Poly-gamma-glutamate biosynthesis protein
21	 34.79	-1	22174..23886	+	570	189909591	-	LBF_0021	-	Hypothetical lipoprotein
22	 36.75	0	23907..26099	-	730	189909592	vacB	LBF_0022	-	Exoribonuclease R
23	 37.72	0	26104..26787	-	227	189909593	-	LBF_0023	-	Metal-dependent molecular chaperone
24	 37.91	0	26784..27242	-	152	189909594	-	LBF_0024	-	ATPase or kinase
25	 36.37	0	27239..28093	-	284	189909595	-	LBF_0025	-	HSP33-family chaperone
26	 41.35	0	28169..30151	+	660	189909596	lacA	LBF_0026	-	Beta-galactosidase
27	 37.47	0	30173..31066	+	297	189909597	-	LBF_0027	-	hypothetical protein
28	 42.94	+1	31077..31919	+	280	189909598	-	LBF_0028	-	Inositol monophosphatase family protein
29	 40.66	0	32026..32598	+	190	189909599	sodA	LBF_0029	-	Superoxide dismutase
30	 40.10	0	32687..34120	+	477	189909600	trpE	LBF_0030	-	Anthranilate synthase (component I)
31	 40.59	0	34132..34737	+	201	189909601	trpG	LBF_0031	-	Anthranilate synthase (component II)
32	 35.05	0	34783..36006	-	407	189909602	-	LBF_0032	-	Hypothetical lipoprotein
33	 33.53	-1	35981..36493	-	170	189909603	-	LBF_0033	-	hypothetical protein
34	 32.79	-1	36582..37316	+	244	189909604	-	LBF_0034	-	hypothetical protein
35	 42.54	0	37313..38029	-	238	189909605	cysE	LBF_0035	-	Serine O-acetyltransferase
36	 36.67	0	38309..39238	+	309	189909606	-	LBF_0036	-	Peptidase, M50 family
37	 34.62	-1	39235..40632	+	465	189909607	-	LBF_0037	-	hypothetical protein
38	 33.70	-1	40604..41422	+	272	189909608	-	LBF_0038	-	hypothetical protein
39	 40.87	0	41430..42623	-	397	189909609	wecE	LBF_0039	-	Pyridoxal-phosphate-dependent aminotransferase
40	 38.06	0	42780..44132	+	450	189909610	add	LBF_0040	-	Adenosine deaminase
41	 34.57	-1	44172..45224	+	350	189909611	-	LBF_0041	-	hypothetical protein
42	 35.84	0	45259..45777	-	172	189909612	-	LBF_0042	-	hypothetical protein
43	 32.58	-1	45858..46256	-	132	189909613	-	LBF_0043	-	hypothetical protein
44	 32.44	-1	46280..46729	-	149	189909614	-	LBF_0044	-	Acetyltransferase
45	 39.15	0	46932..47774	+	280	189909615	-	LBF_0045	-	Catalytic LigB subunit of aromatic ring-opening dioxygenase
46	 38.25	0	47818..48468	+	216	189909616	-	LBF_0046	-	Esterase
47	 34.15	-1	48481..49218	-	245	189909617	-	LBF_0047	-	hypothetical protein
48	 34.94	0	49890..50882	-	330	189909618	-	LBF_0048	-	Transposase
49	 41.07	0	51329..52633	-	434	189909619	purB	LBF_0049	-	Adenylosuccinate lyase
50	 41.41	0	52742..53509	+	255	189909620	-	LBF_0050	-	Short chain dehydrogenase
51	 38.32	0	53496..55460	-	654	189909621	-	LBF_0051	-	Peptidase family M23/M37
52	 38.31	0	55555..56337	-	260	189909622	caiD-3	LBF_0052	-	Enoyl-CoA hydratase
53	 34.05	-1	56454..57425	-	323	189909623	-	LBF_0053	-	Response regulator
54	 34.74	-1	57433..58782	-	449	189909624	-	LBF_0054	-	hypothetical protein
55	 41.46	0	58871..59116	+	81	189909625	-	LBF_0055	-	hypothetical protein
56	 45.03	+1	59231..59974	-	247	189909626	-	LBF_0056	-	hypothetical protein
57	 44.22	+1	60098..61264	+	388	189909627	-	LBF_0057	-	Acyl-CoA dehydrogenase
58	 38.25	0	61321..61890	+	189	189909628	trpG-1	LBF_0058	-	Anthranilate synthase (component II)
59	 39.08	0	61887..63782	+	631	189909629	-	LBF_0059	-	Permease and ATP-binding protein of an ABC transporter complex
60	 41.04	0	63779..64180	+	133	189909630	-	LBF_0060	-	Receiver component of a two-component response regulator
61	 39.15	0	64167..66041	-	624	189909631	-	LBF_0061	-	hypothetical protein
62	 41.23	0	66185..67741	+	518	189909632	-	LBF_0062	-	GTPase
63	 37.37	0	67728..68099	-	123	189909633	-	LBF_0063	-	Anti-Sigma factor antagonist
64	 45.33	+1	68104..69387	-	427	189909634	thrA	LBF_0064	-	Homoserine dehydrogenase
65	 40.76	0	69532..70191	+	219	189909635	-	LBF_0065	-	hypothetical protein
66	 39.54	0	70195..70806	-	203	189909636	-	LBF_0066	-	hypothetical protein
67	 40.19	0	70886..72169	+	427	189909637	-	LBF_0067	-	hypothetical protein
68	 40.26	0	72178..72639	-	153	189909638	-	LBF_0068	-	Transcriptional regulator
69	 42.53	0	72677..74263	-	528	189909639	-	LBF_0069	-	Phytoene dehydrogenase-related protein
70	 38.77	0	74266..75699	-	477	189909640	-	LBF_0070	-	hypothetical protein
71	 41.55	0	75792..76655	+	287	189909641	-	LBF_0071	-	Purine-nucleoside phosphorylase
72	 36.13	0	76652..77044	-	130	189909642	-	LBF_0072	-	Anti-sigma factor antagonist
73	 39.15	0	77041..78210	-	389	189909643	galK	LBF_0073	-	Galactokinase
74	 40.35	0	78255..79607	+	450	189909644	pgi	LBF_0074	-	Glucose-6-phosphate isomerase
75	 34.85	-1	79584..80306	-	240	189909645	-	LBF_0075	-	Nucleoside-diphosphate-sugar pyrophosphorylase
76	 34.14	-1	80303..81292	-	329	189909646	-	LBF_0076	-	Serine/Threonine protein kinase
77	 36.63	0	81301..82818	-	505	189909647	-	LBF_0077	-	Sensor histidine kinase and response regulator of a two component complex
78	 34.00	-1	82805..84598	-	597	189909648	-	LBF_0078	-	Sensor histidine kinase of a two component response regulator
79	 37.13	0	84600..85469	+	289	189909649	-	LBF_0079	-	Alpha/beta hydrolase
80	 43.59	+1	85470..85703	-	77	189909650	-	LBF_0080	-	hypothetical protein
81	 38.24	0	86115..86888	-	257	189909651	-	LBF_0082	-	rRNA methylase/Hemolysin-tylA
82	 40.15	0	86869..87792	-	307	189909652	ispA-1	LBF_0083	-	Geranyltranstransferase
83	 43.72	+1	87846..88259	-	137	189909653	ndk	LBF_0084	-	Nucleoside-diphosphate kinase
84	 41.16	0	88302..90410	-	702	189909654	-	LBF_0085	-	KefB related transport protein
85	 40.37	0	90428..90910	-	160	189909655	coaD	LBF_0086	-	Pantetheine-phosphate adenylyltransferase
86	 41.77	0	90912..92120	-	402	189909656	argG	LBF_0087	-	Argininosuccinate synthase
87	 42.47	0	92202..93350	+	382	189909657	-	LBF_0088	-	hypothetical protein
88	 40.91	0	93334..93861	+	175	189909658	-	LBF_0089	-	hypothetical protein
89	 43.48	+1	93863..95419	+	518	189909659	-	LBF_0090	-	Flavoprotein
90	 40.75	0	95412..96611	-	399	189909660	trmA-2	LBF_0091	-	tRNA (uracil-5-)-methyltransferase
91	 40.32	0	96608..97681	-	357	189909661	pyrD	LBF_0092	-	Dihydroorotate dehydrogenase
92	 36.92	0	97782..99398	+	538	189909662	-	LBF_0093	-	Two component response regulator
93	 37.63	0	99395..100324	+	309	189909663	-	LBF_0094	-	Response regulator
94	 35.67	0	100327..100968	-	213	189909664	-	LBF_0095	-	Phosphatase/phosphohexomutase
95	 36.83	0	100958..101671	-	237	189909665	-	LBF_0096	-	Pseudouridylate synthase
96	 37.51	0	101668..102840	-	390	189909666	-	LBF_0097	-	Ankyrin repeat protein
97	 38.68	0	102834..104162	-	442	189909667	-	LBF_0098	-	hypothetical protein
98	 36.73	0	104308..105513	+	401	189909668	-	LBF_0099	-	Signal transduction protein
99	 36.79	0	105534..106112	-	192	189909669	-	LBF_0100	-	Transcriptional regulator, AcrR-family
100	 37.42	0	106237..106848	+	203	189909670	-	LBF_0101	-	hypothetical protein
38.89	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.