IslandPath Analysis: Acinetobacter sp. ADP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.81   STD DEV: 4.14
Acinetobacter sp. ADP1, complete genome - 1..3598621
3325 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.85	0	201..1598	+	465	50083298	dnaA	ACIAD0001	-	DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes
2	 44.13	0	1834..2982	+	382	50083299	dnaN	ACIAD0002	-	DNA polymerase III, beta chain
3	 42.06	0	2998..4074	+	358	50083300	recF	ACIAD0003	-	DNA replication, recombinaison and repair protein
4	 44.67	0	4127..6595	+	822	50083301	gyrB	ACIAD0004	-	DNA gyrase, subunit B (type II topoisomerase)
5	 42.62	0	6712..6948	-	78	50083302	-	ACIAD0005	-	hypothetical protein
6	 34.50	-1	6969..7139	+	56	50083303	-	ACIAD0006	-	hypothetical protein
7	 45.37	+1	7336..9270	-	644	50083304	-	ACIAD0007	-	ABC transporter ATP-binding protein
8	 43.03	0	9651..10661	+	336	50083305	-	ACIAD0008	-	putative RND type efflux pump involved in aminoglycoside resistance (AdeT)
9	 43.03	0	10910..11920	+	336	50083306	adeT	ACIAD0009	-	RND type efflux pump involved in aminoglycoside resistance
10	 41.96	0	12039..12374	+	111	50083307	-	ACIAD0010	-	iron-sulfur cluster insertion protein ErpA
11	 45.98	+1	12436..13566	-	376	50083308	anmK	ACIAD0011	-	anhydro-N-acetylmuramic acid kinase
12	 45.35	+1	13646..14860	+	404	50083309	tyrS	ACIAD0013	-	tyrosyl-tRNA synthetase
13	 37.25	0	15431..15685	+	84	50083310	-	ACIAD0014	-	hypothetical protein
14	 41.05	0	15927..17882	+	651	50083311	-	ACIAD0015	-	putative 5'-nucleotidase NucA precursor
15	 38.86	0	23916..24530	+	204	50083312	-	ACIAD0017	-	putative glutathione S-transferase
16	 41.99	0	24584..24895	+	103	50083313	-	ACIAD0018	-	hypothetical protein
17	 38.49	0	25116..25658	-	180	50083314	-	ACIAD0019	-	putative flavoprotein
18	 42.65	0	25757..26239	-	160	50083315	fkpB	ACIAD0020	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
19	 40.19	0	26232..26771	-	179	50083316	lspA	ACIAD0021	-	prolipoprotein signal peptidase (Signal peptidase II.)
20	 44.82	0	26764..29601	-	945	50083317	ileS	ACIAD0022	-	isoleucyl-tRNA synthetase
21	 44.01	0	29666..30667	-	333	50083318	ribF	ACIAD0023	-	bifunctional riboflavin kinase/FMN adenylyltransferase
22	 43.20	0	30876..32000	+	374	50083319	-	ACIAD0024	-	putative malic acid transport protein
23	 43.45	0	32045..32845	+	266	50083320	-	ACIAD0025	-	alpha/beta family hydrolase
24	 41.26	0	32918..33535	-	205	50083321	-	ACIAD0026	-	TetR/AcrR family transcriptional regulator
25	 44.50	0	33988..35097	+	369	50083322	-	ACIAD0027	-	putative enzyme (monooxygenase)
26	 43.50	0	35094..35831	+	245	50083323	-	ACIAD0028	-	putative amidohydrolase (isochorismatase)
27	 46.46	+1	35844..36224	+	126	50083324	-	ACIAD0029	-	hypothetical protein
28	 44.97	+1	36303..36869	+	188	50083325	-	ACIAD0030	-	putative flavin:NADH reductase (oxydoreductase)
29	 46.45	+1	36899..38263	+	454	50083326	-	ACIAD0031	-	putative purine permease
30	 47.08	+1	38279..39151	+	290	50083327	-	ACIAD0032	-	putative 3-hydroxyisobutyrate dehydrogenase
31	 44.69	0	39182..39991	-	269	50083328	ssuB	ACIAD0034	-	alkanesulfonate ABC transporter ATP-binding protein
32	 46.44	+1	39995..40795	-	266	50083329	ssuC	ACIAD0035	-	alkanesulfonate ABC transporter membrane protein
33	 48.11	+1	40792..41982	-	396	50083330	ssuD	ACIAD0036	-	alkanesulfonate monooxygenase
34	 44.35	0	42005..43012	-	335	50083331	ssuA	ACIAD0037	-	alkanesulfonate ABC transporter periplasmic-binding protein
35	 42.33	0	43039..44061	-	340	50083332	ssuA	ACIAD0038	-	alkanesulfonate ABC transporter periplasmic-binding protein
36	 43.95	0	44434..45789	-	451	50083333	argA	ACIAD0039	-	N-acetylglutamate synthase
37	 43.56	0	45901..46203	-	100	50083334	-	ACIAD0040	-	putative signal peptide
38	 45.10	+1	46379..46786	-	135	50083335	-	ACIAD0041	-	putative signal peptide
39	 46.99	+1	47056..47802	-	248	50083336	-	ACIAD0042	-	short chain dehydrogenase
40	 46.61	+1	47833..48540	-	235	50083337	-	ACIAD0043	-	putative phosphoglycolate phosphatase 2 (PGP 2)
41	 45.05	+1	48537..49253	-	238	50083338	ubiG	ACIAD0044	-	3-demethylubiquinone-9 3-methyltransferase
42	 41.22	0	49432..50052	+	206	50083339	dsbA	ACIAD0045	-	thiol:disulfide interchange protein, periplasmic, alkali-inducible
43	 42.67	0	50137..50811	-	224	50083340	-	ACIAD0046	-	putative transcriptional regulator
44	 46.23	+1	50905..51540	-	211	50083341	-	ACIAD0047	-	hypothetical protein
45	 42.42	0	51732..52754	+	340	50083342	-	ACIAD0048	-	putative oxidoreductase
46	 42.19	0	52789..53940	+	383	50083343	-	ACIAD0049	-	putative linoleoyl-CoA desaturase
47	 44.71	0	54008..54763	+	251	50083344	rph	ACIAD0050	-	ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
48	 38.60	0	54987..55442	+	151	50083345	-	ACIAD0051	-	hypothetical protein
49	 35.52	-1	55435..55983	+	182	50083346	-	ACIAD0052	-	hypothetical protein
50	 27.01	-2	55985..56617	+	210	50083347	-	ACIAD0053	-	zinc protease
51	 22.74	-2	56618..57070	+	150	50083348	-	ACIAD0054	-	hypothetical protein
52	 20.93	-2	57346..57474	+	42	50083349	-	ACIAD0055	-	hypothetical protein
53	 25.79	-2	57531..57689	+	52	50083350	-	ACIAD0056	-	hypothetical protein
54	 31.54	-2	57779..58168	+	129	50083351	-	ACIAD0057	-	hypothetical protein
55	 39.25	0	58242..58427	+	61	50083352	-	ACIAD0058	-	hypothetical protein
56	 31.40	-2	58409..58615	+	68	50083353	-	ACIAD0059	-	hypothetical protein
57	 38.10	0	58923..59048	+	41	50083354	-	ACIAD0060	-	hypothetical protein
58	 42.16	0	59058..59261	+	67	50083355	-	ACIAD0061	-	hypothetical protein
59	 44.60	0	59258..60127	-	289	50083356	nadC	ACIAD0062	-	nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)
60	 43.99	0	60290..60880	+	196	50083357	ampD	ACIAD0063	-	N-acetyl-anhydromuranmyl-L-alanine amidase
61	 46.06	+1	60933..62480	+	515	50083358	-	ACIAD0064	-	MviN family virulence factor
62	 44.21	0	62660..63358	-	232	50083359	fklB	ACIAD0065	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)
63	 43.50	0	63404..64111	-	235	50083360	fkpA	ACIAD0066	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
64	 39.53	0	64281..66491	-	736	50083361	ptk	ACIAD0068	-	tyrosine-protein kinase, autophosphorylates
65	 42.13	0	66506..66937	-	143	50083362	ptp	ACIAD0069	-	low molecular weight protein-tyrosine-phosphatase
66	 43.03	0	66934..68037	-	367	50083363	wza	ACIAD0070	-	polysaccharide export protein
67	 37.97	0	68507..69670	+	387	50083364	ugd	ACIAD0072	-	UDP-glucose 6-dehydrogenase
68	 28.47	-2	69689..70573	+	294	50083365	-	ACIAD0073	-	glycosyl transferase family protein
69	 26.77	-2	70563..71492	+	309	50083366	-	ACIAD0074	-	glycosyl transferase family protein
70	 25.02	-2	71489..72739	+	416	50083367	-	ACIAD0075	-	putative polysaccharide transport protein
71	 40.15	0	72769..73839	+	356	50083368	rmlB	ACIAD0076	-	dTDP-D-glucose-4,6-dehydratase
72	 40.15	0	73858..74766	+	302	50083369	rmlD	ACIAD0078	-	dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase)
73	 40.33	0	74767..75666	+	299	50083370	rmlA	ACIAD0079	-	dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase)
74	 37.94	0	75737..76300	+	187	50083371	rmlC	ACIAD0080	-	dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase
75	 29.91	-2	76314..77393	+	359	50083372	-	ACIAD0081	-	glycosyl transferase family protein
76	 26.69	-2	77383..78330	+	315	50083373	-	ACIAD0082	-	rhamnosyl transferase
77	 22.77	-2	78350..79315	+	321	50083374	-	ACIAD0083	-	putative polysaccharide polymerase
78	 29.02	-2	79335..80354	+	339	50083375	-	ACIAD0084	-	mannosyl transferase
79	 33.96	-1	80367..81164	+	265	50083376	-	ACIAD0085	-	glycosyl transferase family protein
80	 42.14	0	81192..82610	-	472	50083377	epsM	ACIAD0086	-	bifunctional mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase
81	 44.93	0	82926..84218	+	430	50083378	-	ACIAD0087	-	putative UDP-glucose/GDP-mannose dehydrogenase
82	 47.09	+1	84248..85279	+	343	50083379	-	ACIAD0088	-	putative NAD-dependent epimerase/dehydratase (WbpP)
83	 43.21	0	85279..86574	+	431	50083380	-	ACIAD0089	-	MviN family virulence factor
84	 47.96	+1	86571..87671	+	366	50083381	-	ACIAD0090	-	glycosyl transferase family protein
85	 45.97	+1	87684..88775	+	363	50083382	-	ACIAD0091	-	glycosyl transferase family protein
86	 49.52	+2	88784..89920	+	378	50083383	-	ACIAD0092	-	glycosyl transferase family protein
87	 46.34	+1	89914..90528	+	204	50083384	-	ACIAD0093	-	putative UDP-galactose phosphate transferase (WeeH)
88	 46.43	+1	90509..91195	+	228	50083385	-	ACIAD0094	-	putative acetyltransferase (WeeI)
89	 48.30	+1	91199..92374	+	391	50083386	per	ACIAD0095	-	perosamine synthetase (WeeJ)
90	 45.24	+1	92376..94265	+	629	50083387	-	ACIAD0096	-	putative dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase (WeeK) (WbpM)
91	 36.63	-1	94679..96043	+	454	50083388	-	ACIAD0098	-	putative UDP-glucose lipid carrier transferase/glucose-1-phosphate transferase in colanic acid gene cluster (WcaJ)
92	 42.68	0	96123..97010	+	295	50083389	galU	ACIAD0099	-	UTP-glucose-1-phosphate uridylyltransferase
93	 41.51	0	97037..98308	+	423	50083390	-	ACIAD0100	-	putative UDP-glucose 6-dehydrogenase (Ugd) (Udg)
94	 41.40	0	98305..99978	+	557	50083391	pgi	ACIAD0101	-	glucose-6-phosphate isomerase
95	 44.12	0	99971..100990	+	339	50083392	galE	ACIAD0102	-	UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase)
96	 44.11	0	101027..102733	+	568	50083393	-	ACIAD0103	-	hypothetical protein
97	 42.94	0	102792..104165	-	457	50083394	manB	ACIAD0104	-	bifunctional phosphomannomutase/phosphoglucomutase
98	 41.00	0	104308..105207	-	299	50083395	-	ACIAD0105	-	LysR family transcriptional regulator
99	 43.66	0	105761..107416	+	551	50083396	lldP	ACIAD0106	-	L-lactate permease
100	 49.40	+2	107440..108192	+	250	50083397	lldR	ACIAD0107	-	DNA-binding transcriptional repressor LldR
40.81	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.