IslandPath Analysis: Hyperthermus butylicus DSM 5456



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.72   STD DEV: 4.53
Hyperthermus butylicus DSM 5456, complete genome - 1..1667163
1602 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.84	0	907..1857	-	316	124026907	-	Hbut_0001	-	hypothetical protein
2	 54.95	0	3349..3732	+	127	124026908	-	Hbut_0004	-	Zn binding domain-containing protein
3	 52.89	0	3689..4414	+	241	124026909	-	Hbut_0005	-	geranylgeranylglyceryl phosphate synthase-like protein
4	 51.49	0	4415..4717	-	100	124026910	-	Hbut_0006	-	Mazg nucleotide pyrophosphohydrolase, chain A - protein
5	 52.31	0	4816..5010	-	64	124026911	-	Hbut_0007	-	hypothetical protein
6	 51.24	0	5540..6829	-	429	124026912	-	Hbut_0008	-	nucleic acid binding protein
7	 42.68	-2	6899..7144	-	81	124026913	-	Hbut_0009	-	AsnC family transcriptional regulator
8	 52.19	0	7282..7875	+	197	124026914	-	Hbut_0010	-	hypothetical protein
9	 50.92	0	8057..8437	-	126	124026915	-	Hbut_0012	-	HTH - DNA binding protein
10	 50.65	0	8453..9226	-	257	124026916	-	Hbut_0013	-	Thr/Ser protein kinase
11	 55.53	0	9157..10611	-	484	124026917	-	Hbut_0014	-	tRNA nucleotidyltransferase
12	 50.88	0	10806..11540	+	244	124026918	-	Hbut_0015	-	HD superfamily metal-dependent phosphohydrolase
13	 50.85	0	11925..12986	-	353	124026919	-	Hbut_0016	-	dehydrogenase FixC
14	 50.59	0	12983..13921	-	312	124026920	-	Hbut_0017	-	geranylgeranyl pyrophosphate synthase, IspA
15	 47.52	-1	14098..14844	+	248	124026921	-	Hbut_0018	-	DNA polymerase sliding clamp subunit
16	 50.34	0	14923..15816	-	297	124026922	-	Hbut_0019	-	glutathione synthase-RimK/ribosomal protein S6 modification (glutaminyl transferase)
17	 46.40	-1	15809..16030	-	73	124026923	-	Hbut_0020	-	hypothetical protein
18	 50.10	0	16279..16779	-	166	124026924	-	Hbut_0021	-	hypothetical protein
19	 51.03	0	16746..17570	-	274	124026925	-	Hbut_0022	-	5'-methylthioadenosine phosphorylase II
20	 47.60	-1	17656..18594	-	312	124026926	-	Hbut_0023	-	methyl transferase
21	 47.42	-1	18708..18998	-	96	124026927	-	Hbut_0024	-	hypothetical protein
22	 48.40	-1	19126..20034	+	302	124026928	-	Hbut_0025	-	polyprenyltransferase family protein - UbiA
23	 47.93	-1	20053..20751	-	232	124026929	-	Hbut_0026	-	hypothetical protein
24	 48.84	-1	20723..21457	-	244	124026930	-	Hbut_0027	-	hypothetical protein
25	 44.16	-2	21563..22024	+	153	124026931	-	Hbut_0028	-	hypothetical protein
26	 49.11	-1	22029..22364	-	111	124026932	-	Hbut_0029	-	hypothetical protein
27	 53.14	0	22465..23706	+	413	124026933	-	Hbut_0030	-	ribosomal biogenesis protein - Nop56/SIK1
28	 50.91	0	23736..24446	+	236	124026934	-	Hbut_0031	-	fibrillarin
29	 45.10	-1	24571..25029	+	152	124026935	-	Hbut_0032	-	hypothetical protein
30	 49.32	0	25036..25992	+	318	124026936	-	Hbut_0033	-	HTH-type transcriptional regulator
31	 52.67	0	26079..27407	+	442	124026937	-	Hbut_0034	-	aspartyl-tRNA synthetase
32	 52.00	0	27581..28828	+	415	124026938	-	Hbut_0035	-	Fe-S oxidoreductase - arylsulfatase regulator AslB
33	 52.20	0	28834..29835	+	333	124026939	-	Hbut_0036	-	hypothetical protein
34	 50.51	0	29847..31034	+	395	124026940	-	Hbut_0037	-	Fe-S oxidoreductase - metallo cofactor biosynthesis protein
35	 52.73	0	31031..31798	-	255	124026941	-	Hbut_0038	-	5-formyltetrahydrofolate cyclo-ligase
36	 51.98	0	31795..32502	-	235	124026942	-	Hbut_0039	-	RecB family-like endonuclease
37	 49.12	-1	32612..33574	+	320	124026943	-	Hbut_0040	-	putative deoxyhypusine synthase
38	 50.63	0	33546..34100	-	184	124026944	-	Hbut_0041	-	rRNA methylase family protein
39	 50.14	0	34210..34929	+	239	124026945	-	Hbut_0042	-	ubiquinone/menaquinone biosynthesis methyl transferase
40	 52.19	0	34883..35476	+	197	124026946	-	Hbut_0043	-	flavoprotein, 3-polyprenyl-4-hydroxybenzoate decarboxylase, UbiX
41	 53.10	0	35449..35883	-	144	124026947	-	Hbut_0044	-	hypothetical protein
42	 51.83	0	35980..36525	-	181	124026948	-	Hbut_0045	-	tRNA-splicing endonuclease subunit alpha
43	 46.61	-1	36540..37247	-	235	124026949	-	Hbut_0046	-	putative phosphate transport regulator
44	 50.85	0	37367..38953	+	528	124026950	-	Hbut_0047	-	radical SAM family Fe-S oxidoreductase
45	 49.32	0	38950..39393	-	147	124026951	-	Hbut_0048	-	hypothetical protein
46	 50.88	0	39594..39992	-	132	124026952	-	Hbut_0049	-	hypothetical protein
47	 50.56	0	40063..41844	-	593	124026953	-	Hbut_0050	-	glycyl-tRNA synthetase
48	 50.91	0	41953..42891	+	312	124026954	-	Hbut_0051	-	agmatinase
49	 51.47	0	42878..43081	-	67	124026955	-	Hbut_0052	-	DNA-directed RNA polymerase, subunit P
50	 49.68	0	43200..43511	+	103	124026956	-	Hbut_0053	-	translation initiation factor Sui1
51	 53.92	0	43820..44776	+	318	124026957	-	Hbut_0054	-	transcription initiation factor IIB
52	 55.54	0	44860..46557	+	565	124026958	-	Hbut_0055	-	lysyl-tRNA synthetase
53	 51.67	0	46625..47044	+	139	124026959	-	Hbut_0056	-	transcriptional regulator
54	 52.10	0	47041..47919	-	292	124026960	-	Hbut_0057	-	spermidine synthase, SpeE
55	 52.22	0	48394..49023	+	209	124026961	-	Hbut_0059	-	putative Fe-S oxidoreductase
56	 53.99	0	49085..49810	+	241	124026962	-	Hbut_0060	-	cytidylyl transferase, TagD
57	 59.01	+1	49807..50433	-	208	124026963	-	Hbut_0061	-	hypothetical protein
58	 55.56	0	50533..50739	-	68	124026964	-	Hbut_0062	-	cren protein
59	 50.55	0	50853..51485	+	210	124026965	-	Hbut_0063	-	iisochorismatase family protein
60	 53.43	0	51739..53574	+	611	124026966	-	Hbut_0064	-	XPD/Rad3 related DNA helicase
61	 52.99	0	53906..55009	-	367	124026967	-	Hbut_0065	-	ABC-type, ATP binding, spermidine/spermine transporter, PotA
62	 50.84	0	55074..56969	-	631	124026968	-	Hbut_0066	-	ABC-type Fe3+ transport - permease
63	 51.22	0	56959..58512	-	517	124026969	-	Hbut_0067	-	ABC-type Fe3+ transport system, periplasmic component
64	 52.22	0	58721..60070	+	449	124026970	-	Hbut_0068	-	hypothetical protein
65	 49.66	0	60345..62420	+	691	124026971	-	Hbut_0069	-	metallo phosphoesterase
66	 45.83	-1	62417..62896	-	159	124026972	-	Hbut_0070	-	hypothetical protein
67	 51.54	0	62965..63420	-	151	124026973	-	Hbut_0071	-	hypothetical protein
68	 48.78	-1	63555..64454	+	299	124026974	-	Hbut_0072	-	RIO-like serine/threonine kinase
69	 48.80	-1	64600..64974	+	124	124026975	-	Hbut_0073	-	transcriptional regulator, HTH-type
70	 46.77	-1	65449..65820	-	123	124026976	-	Hbut_0075	-	hypothetical protein
71	 53.42	0	66965..67621	+	218	124026977	-	Hbut_0076	-	hypothetical protein
72	 61.54	+1	67761..68267	+	168	124026978	-	Hbut_0077	-	hypothetical protein
73	 58.49	+1	69281..70417	+	378	124026979	-	Hbut_0078	-	phosphate uptake regulator, PhoU
74	 62.28	+1	70621..71736	+	371	124026980	-	Hbut_0079	-	hypothetical protein
75	 56.62	0	71771..72457	-	228	124026981	-	Hbut_0080	-	phosphoribosyltransferase
76	 54.17	0	72525..72932	-	135	124026982	-	Hbut_0081	-	hypothetical protein
77	 53.86	0	73156..75303	+	715	124026983	-	Hbut_0082	-	hypothetical protein
78	 51.54	0	75271..76500	-	409	124026984	-	Hbut_0083	-	S-adenosylmethionine synthetase
79	 52.48	0	76584..76865	-	93	124026985	-	Hbut_0084	-	putative snRNP Sm-like protein
80	 51.37	0	77133..77498	-	121	124026986	-	Hbut_0085	-	hypothetical protein
81	 57.35	0	77829..78977	+	382	124026987	-	Hbut_0087	-	putative dehydrogenase (flavoprotein), FixC
82	 54.98	0	78943..79806	+	287	124026988	-	Hbut_0088	-	methyltransferase
83	 54.11	0	79803..80240	-	145	124026989	-	Hbut_0089	-	hypothetical protein
84	 53.01	0	80374..82152	+	592	124026990	-	Hbut_0090	-	serine protease
85	 58.11	0	82108..82773	-	221	124026991	-	Hbut_0091	-	Uracil-DNA glycosylase
86	 57.77	0	82882..83724	+	280	124026992	-	Hbut_0092	-	uridine phosphorylase
87	 56.02	0	83752..83967	+	71	124026993	-	Hbut_0093	-	hypothetical protein
88	 52.53	0	83933..84958	+	341	124026994	-	Hbut_0094	-	ATPase
89	 54.39	0	84968..86197	+	409	124026995	-	Hbut_0095	-	hypothetical protein
90	 57.86	0	86194..87045	-	283	124026996	-	Hbut_0096	-	ABC-transporter, permease component
91	 56.07	0	87038..88075	-	345	124026997	-	Hbut_0097	-	ABC-type uncharacterized transport, permease
92	 55.56	0	88065..89594	-	509	124026998	-	Hbut_0098	-	ribose ABC transporter ATP-binding protein, RbsA-1
93	 56.93	0	89762..90028	-	88	124026999	-	Hbut_0099	-	50S ribosomal protein L13e
94	 50.94	0	90858..91334	-	158	124027000	-	Hbut_0100	-	HTH-type transcriptional regulator
95	 51.20	0	91521..91811	+	96	124027001	-	Hbut_0101	-	hypothetical protein
96	 54.34	0	91864..92220	+	118	124027002	-	Hbut_0102	-	tRNA-binding protein - N-terminal MetRS
97	 53.72	0	92231..93373	+	380	124027003	-	Hbut_0103	-	amino acid dehydrogenase
98	 52.15	0	93665..94408	+	247	124027004	-	Hbut_0104	-	ABC-type uncharacterized transporter
99	 49.64	0	94405..95637	+	410	124027005	-	Hbut_0105	-	ABC-type Na+ efflux pump, permease
100	 49.36	0	95711..96022	+	103	124027006	-	Hbut_0106	-	signal recognition particle protein Srp19
53.72	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.