IslandPath Analysis: Burkholderia phytofirmans PsJN



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.43   STD DEV: 3.63
Burkholderia phytofirmans PsJN chromosome 2, complete sequence - 1..3625999
3152 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.19	+1	270..479	-	69	187918715	-	Bphyt_3990	-	hypothetical protein
2	 67.37	+1	663..947	-	94	187918716	-	Bphyt_3991	-	hypothetical protein
3	 59.14	0	1036..1314	-	92	187918717	-	Bphyt_3992	-	hypothetical protein
4	 64.98	0	1730..3865	+	711	187918718	-	Bphyt_3993	-	serine/threonine protein kinase
5	 65.20	0	3938..5911	-	657	187918719	-	Bphyt_3994	-	protein of unknown function DUF323
6	 61.71	0	6280..6783	+	167	187918720	-	Bphyt_3995	-	hypothetical protein
7	 60.00	0	6831..7265	+	144	187918721	-	Bphyt_3996	-	hypothetical protein
8	 57.09	-1	7569..7850	+	93	187918722	-	Bphyt_3997	-	hypothetical protein
9	 61.72	0	8076..9530	+	484	187918723	-	Bphyt_3998	-	RND efflux system, outer membrane lipoprotein, NodT family
10	 63.53	0	9760..12342	+	860	187918724	-	Bphyt_3999	-	FHA domain containing protein
11	 61.72	0	12320..13693	+	457	187918725	-	Bphyt_4000	-	secretion protein HlyD family protein
12	 59.89	0	13731..14483	+	250	187918726	-	Bphyt_4001	-	PpiC-type peptidyl-prolyl cis-trans isomerase
13	 58.65	-1	14550..17606	+	1018	187918727	-	Bphyt_4002	-	cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter
14	 61.65	0	17606..18961	+	451	187918728	-	Bphyt_4003	-	putative sigma54 specific transcriptional regulator
15	 65.63	0	18986..19756	-	256	187918729	-	Bphyt_4004	-	protein serine/threonine phosphatase
16	 57.64	-1	19762..20049	-	95	187918730	-	Bphyt_4005	-	hypothetical protein
17	 63.65	0	20520..21017	+	165	187918731	-	Bphyt_4006	-	hypothetical protein
18	 63.18	0	21085..21342	+	85	187918732	-	Bphyt_4007	-	hypothetical protein
19	 62.57	0	21339..22217	-	292	187918733	-	Bphyt_4008	-	transcriptional regulator, LysR family
20	 66.67	+1	22318..23265	+	315	187918734	-	Bphyt_4009	-	Beta-lactamase
21	 60.16	0	23311..23556	+	81	187918735	-	Bphyt_4010	-	hypothetical protein
22	 64.01	0	23615..24631	-	338	187918736	-	Bphyt_4011	-	C4-dicarboxylate transporter/malic acid transport protein
23	 65.49	0	24912..25676	+	254	187918737	-	Bphyt_4012	-	transcriptional regulator, IclR family
24	 63.64	0	25706..26530	-	274	187918738	-	Bphyt_4013	-	citrate synthase
25	 64.00	0	26533..27732	-	399	187918739	-	Bphyt_4014	-	L-carnitine dehydratase/bile acid-inducible protein F
26	 65.13	0	27774..29207	-	477	187918740	-	Bphyt_4015	-	major facilitator superfamily MFS_1
27	 59.26	0	29413..29763	-	116	187918741	-	Bphyt_4016	-	response regulator receiver protein
28	 62.26	0	29770..31245	-	491	187918742	-	Bphyt_4017	-	Non-specific serine/threonine protein kinase
29	 65.05	0	31599..33332	-	577	187918743	-	Bphyt_4018	-	Feruloyl esterase
30	 66.05	0	33343..34482	-	379	187918744	-	Bphyt_4019	-	porin Gram-negative type
31	 65.46	0	34544..35791	-	415	187918745	-	Bphyt_4020	-	major facilitator superfamily MFS_1
32	 63.07	0	36123..36623	-	166	187918746	-	Bphyt_4021	-	transcriptional regulator, MarR family
33	 61.84	0	36761..37588	+	275	187918747	-	Bphyt_4022	-	Enoyl-CoA hydratase/isomerase
34	 65.43	0	37670..39121	+	483	187918748	-	Bphyt_4023	-	Aldehyde Dehydrogenase
35	 63.72	0	39158..41059	+	633	187918749	-	Bphyt_4024	-	AMP-dependent synthetase and ligase
36	 58.08	-1	41099..41983	+	294	187918750	-	Bphyt_4025	-	amidohydrolase 2
37	 62.21	0	42010..43176	+	388	187918751	-	Bphyt_4026	-	Squalene/phytoene synthase
38	 57.03	-1	43294..43542	+	82	187918752	-	Bphyt_4027	-	hypothetical protein
39	 59.43	0	43885..44202	-	105	187918753	-	Bphyt_4028	-	hypothetical protein
40	 64.07	0	44430..45122	-	230	187918754	-	Bphyt_4029	-	hypothetical protein
41	 58.39	-1	45122..45604	-	160	187918755	-	Bphyt_4030	-	protein of unknown function DUF847
42	 60.39	0	45686..47119	-	477	187918756	-	Bphyt_4031	-	Tetratricopeptide TPR_2 repeat protein
43	 61.80	0	47455..47721	-	88	187918757	-	Bphyt_4032	-	hypothetical protein
44	 60.65	0	48178..49041	-	287	187918758	-	Bphyt_4033	-	binding-protein-dependent transport systems inner membrane component
45	 61.26	0	49058..49852	-	264	187918759	-	Bphyt_4034	-	ABC transporter related
46	 62.65	0	49893..50912	-	339	187918760	-	Bphyt_4035	-	ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein
47	 63.13	0	51162..51839	+	225	187918761	-	Bphyt_4036	-	two component transcriptional regulator, winged helix family
48	 64.59	0	51829..53223	+	464	187918762	-	Bphyt_4037	-	histidine kinase
49	 61.44	0	53349..54419	+	356	187918763	-	Bphyt_4038	-	NMT1/THI5 like domain protein
50	 61.39	0	54486..55868	+	460	187918764	-	Bphyt_4039	-	integral membrane sensor signal transduction histidine kinase
51	 60.23	0	55894..56592	+	232	187918765	-	Bphyt_4040	-	two component transcriptional regulator, winged helix family
52	 58.22	-1	56775..57899	+	374	187918766	-	Bphyt_4041	-	porin Gram-negative type
53	 61.97	0	58278..58511	+	77	187918767	-	Bphyt_4043	-	hypothetical protein
54	 59.26	0	59188..60105	+	305	187918768	-	Bphyt_4045	-	diguanylate phosphodiesterase
55	 57.75	-1	60302..61030	-	242	187918769	-	Bphyt_4046	-	glycosyl transferase, WecB/TagA/CpsF family
56	 58.01	-1	61098..62264	-	388	187918770	-	Bphyt_4047	-	hypothetical protein
57	 54.76	-2	62261..63058	-	265	187918771	-	Bphyt_4048	-	hypothetical protein
58	 56.78	-1	63055..64146	-	363	187918772	-	Bphyt_4049	-	glycosyl transferase group 1
59	 51.35	-2	64143..65402	-	419	187918773	-	Bphyt_4050	-	hypothetical protein
60	 57.51	-1	65399..66730	-	443	187918774	-	Bphyt_4051	-	hypothetical protein
61	 56.42	-1	66730..67968	-	412	187918775	-	Bphyt_4052	-	nucleotide sugar dehydrogenase
62	 55.87	-1	68137..70359	-	740	187918776	-	Bphyt_4053	-	exopolysaccharide transport protein family
63	 58.06	-1	70416..70868	-	150	187918777	-	Bphyt_4054	-	protein tyrosine phosphatase
64	 55.84	-1	70865..72037	-	390	187918778	-	Bphyt_4055	-	polysaccharide export protein
65	 55.23	-1	72169..73584	-	471	187918779	-	Bphyt_4056	-	Undecaprenyl-phosphate glucose phosphotransferase
66	 54.40	-2	74659..74976	-	105	187918780	-	Bphyt_4057	-	hypothetical protein
67	 59.50	0	75390..76658	-	422	187918781	-	Bphyt_4058	-	hypothetical protein
68	 71.88	+2	76739..77755	-	338	187918782	-	Bphyt_4059	-	putative lipoprotein
69	 59.76	0	77907..78833	+	308	187918783	-	Bphyt_4060	-	hypothetical protein
70	 64.95	0	78863..80026	-	387	187918784	-	Bphyt_4061	-	iron-containing alcohol dehydrogenase
71	 59.87	0	80023..80331	-	102	187918785	-	Bphyt_4062	-	Antibiotic biosynthesis monooxygenase
72	 67.26	+1	80806..81477	+	223	187918786	-	Bphyt_4063	-	RNA polymerase, sigma-24 subunit, ECF subfamily
73	 66.67	+1	81606..81845	+	79	187918787	-	Bphyt_4064	-	MbtH domain protein
74	 63.67	0	81933..82967	+	344	187918788	-	Bphyt_4065	-	Taurine catabolism dioxygenase TauD/TfdA
75	 67.36	+1	82964..83830	+	288	187918789	-	Bphyt_4066	-	ABC transporter related
76	 70.55	+2	83827..85935	+	702	187918790	-	Bphyt_4067	-	transport system permease protein
77	 62.39	0	85932..86750	+	272	187918791	-	Bphyt_4068	-	putative iron reductase
78	 62.97	0	86828..87856	+	342	187918792	-	Bphyt_4069	-	periplasmic binding protein
79	 61.81	0	87949..88236	-	95	187918793	-	Bphyt_4070	-	hypothetical protein
80	 64.29	0	88236..90002	-	588	187918794	-	Bphyt_4071	-	cyclic peptide transporter
81	 65.56	0	90294..99986	+	3230	187918795	-	Bphyt_4072	-	amino acid adenylation domain protein
82	 66.47	+1	100021..105045	+	1674	187918796	-	Bphyt_4073	-	amino acid adenylation domain protein
83	 63.02	0	105179..106549	+	456	187918797	-	Bphyt_4074	-	L-ornithine 5-monooxygenase
84	 62.38	0	106597..108834	+	745	187918798	-	Bphyt_4075	-	TonB-dependent siderophore receptor
85	 58.72	-1	108869..109711	+	280	187918799	-	Bphyt_4076	-	hypothetical protein
86	 62.43	0	109779..111503	-	574	187918800	-	Bphyt_4077	-	major facilitator superfamily MFS_1
87	 64.43	0	111631..112569	+	312	187918801	-	Bphyt_4078	-	transcriptional regulator, LysR family
88	 63.55	0	112566..114749	-	727	187918802	-	Bphyt_4079	-	TonB-dependent siderophore receptor
89	 62.67	0	115165..117393	+	742	187918803	-	Bphyt_4080	-	isocitrate dehydrogenase, NADP-dependent
90	 56.71	-1	117501..117731	-	76	187918804	-	Bphyt_4081	-	hypothetical protein
91	 66.91	+1	118124..118942	-	272	187918805	-	Bphyt_4082	-	alpha/beta hydrolase fold
92	 64.51	0	119127..120515	-	462	187918806	-	Bphyt_4083	-	major facilitator superfamily MFS_1
93	 66.31	+1	120657..122909	-	750	187918807	-	Bphyt_4084	-	CoA-binding domain protein
94	 64.33	0	122918..124114	-	398	187918808	-	Bphyt_4085	-	acyl-CoA dehydrogenase domain protein
95	 61.74	0	124279..125130	+	283	187918809	-	Bphyt_4086	-	transcriptional regulator, IclR family
96	 63.09	0	125233..126573	-	446	187918810	-	Bphyt_4087	-	hypothetical protein
97	 69.29	+1	126604..127098	-	164	187918811	-	Bphyt_4088	-	hypothetical protein
98	 65.77	0	127277..128170	-	297	187918812	-	Bphyt_4089	-	transcriptional regulator, LysR family
99	 63.30	0	128270..129574	+	434	187918813	-	Bphyt_4090	-	citrate/H+ symporter, CitMHS family
100	 64.83	0	129604..130962	+	452	187918814	-	Bphyt_4091	-	protein of unknown function DUF1446
62.43	MEAN

3.63	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.