IslandPath Analysis: Brucella ovis ATCC 25840



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.49   STD DEV: 3.63
Brucella ovis ATCC 25840 chromosome I, complete sequence - 1..2111370
1928 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.36	0	785..2275	+	496	148559145	dnaA	BOV_0001	-	chromosomal replication initiation protein
2	 58.79	0	2504..3697	+	397	148560207	dnaN	BOV_0002	-	DNA polymerase III subunit beta
3	 61.21	+1	3879..5033	+	384	148560734	recF	BOV_0003	-	recombination protein F
4	 61.43	+1	5071..5853	+	260	148558989	moeB	BOV_0004	-	molybdopterin biosynthesis protein MoeB
5	 57.47	0	5870..6826	-	318	148559828	-	BOV_0005	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
6	 58.92	0	6823..8475	-	550	148559174	-	BOV_0006	-	ABC transporter, ATP-binding protein
7	 58.07	0	8472..9611	-	379	148559749	-	BOV_0007	-	ABC transporter, permease protein
8	 55.92	0	9611..10708	-	365	148558879	-	BOV_0008	-	ABC transporter, permease protein
9	 57.36	0	10820..12667	-	615	148559172	-	BOV_0009	-	putative ABC transporter, periplasmic substrate-binding protein
10	 55.81	0	12681..14513	-	610	148560054	-	BOV_0010	-	putative ABC transporter, periplasmic substrate-binding protein
11	 48.26	-2	15149..15349	-	66	148560437	-	BOV_0011	-	hypothetical protein
12	 59.62	0	16004..17110	-	368	148559903	-	BOV_0012	-	putative branched-chain amino acid ABC transporter, perisplasmic amino acid-binding protein
13	 61.64	+1	17579..18373	-	264	148559766	-	BOV_0013	-	enoyl-CoA hydratase
14	 59.49	0	18370..19233	-	287	148558828	mvaB	BOV_0014	-	hydroxymethylglutaryl-CoA lyase
15	 61.97	+1	19226..21247	-	673	148559969	-	BOV_0015	-	biotin carboxylase
16	 62.13	+1	21259..22866	-	535	148560552	-	BOV_0016	-	carboxyl transferase family protein
17	 59.01	0	22866..24014	-	382	148559146	ivd	BOV_0017	-	isovaleryl-CoA dehydrogenase
18	 59.88	0	24191..26179	-	662	148560105	-	BOV_0018	-	acetoacetyl-CoA synthetase
19	 53.10	-1	26364..26798	-	144	148559532	-	BOV_0019	-	hypothetical protein
20	 54.81	0	26975..28096	-	373	148559881	-	BOV_0020	-	hypothetical protein
21	 55.99	0	28619..29002	-	127	148559056	-	BOV_0023	-	hypothetical protein
22	 60.75	0	29354..30739	+	461	148559649	aroA	BOV_0024	-	3-phosphoshikimate 1-carboxyvinyltransferase
23	 62.42	+1	30736..31395	+	219	148559924	cmk	BOV_0025	-	cytidylate kinase
24	 57.97	0	31611..33311	+	566	148560426	rpsA	BOV_0026	-	30S ribosomal protein S1
25	 50.89	-1	33567..33959	-	130	148559389	-	BOV_0027	-	transposase OrfB
26	 58.01	0	33991..34302	-	103	148560651	-	BOV_0028	-	transposase OrfA
27	 60.38	0	34569..35507	-	312	148560247	-	BOV_0029	-	hypothetical protein
28	 57.44	0	35695..36594	+	299	148559636	-	BOV_0030	-	LysR family transcriptional regulator
29	 54.98	0	37171..38454	-	427	148558970	-	BOV_0031	-	putative transglycosylase
30	 59.66	0	38470..39168	-	232	148560476	recR	BOV_0032	-	recombination protein RecR
31	 59.88	0	39206..39529	-	107	148560040	-	BOV_0033	-	hypothetical protein
32	 61.80	+1	39554..41362	-	602	148559186	-	BOV_0034	-	DNA polymerase III subunits gamma and tau
33	 59.44	0	41550..42047	+	165	148559445	-	BOV_0035	-	hypothetical protein
34	 60.23	0	42076..43023	+	315	148560309	-	BOV_0036	-	MutT/nudix family protein
35	 58.68	0	43024..43887	-	287	148560323	pheA	BOV_0037	-	prephenate dehydratase
36	 59.72	0	43976..44896	-	306	148559227	kdsB	BOV_0038	-	3-deoxy-manno-octulosonate cytidylyltransferase
37	 58.55	0	45139..45717	+	192	148559155	-	BOV_0039	-	cytochrome c, membrane-bound
38	 60.03	0	45762..46967	-	401	148560679	-	BOV_0040	-	hypothetical protein
39	 49.33	-2	47007..47156	-	49	148559548	-	BOV_0041	-	hypothetical protein
40	 55.75	0	47255..48280	+	341	148560278	cyoA	BOV_0042	-	ubiquinol oxidase, subunit II
41	 57.98	0	48360..50339	+	659	148559530	cyoB	BOV_0043	-	cytochrome o ubiquinol oxidase, subunit I
42	 58.10	0	50343..50972	+	209	148560198	cyoC	BOV_0044	-	cytochrome o ubiquinol oxidase, subunit III
43	 55.19	0	50972..51337	+	121	148560321	cyoD	BOV_0045	-	cytochrome o ubiquinol oxidase subunit IV
44	 59.27	0	52972..54891	+	639	148559498	-	BOV_0047	-	hypothetical protein
45	 59.92	0	55080..59612	+	1510	148560599	-	BOV_0048	-	hypothetical protein
46	 57.44	0	59757..60482	+	241	148559068	-	BOV_0049	-	putative lipoprotein
47	 55.09	0	60533..60748	-	71	148559872	-	BOV_0050	-	hypothetical protein
48	 58.86	0	60642..60974	+	110	148560175	-	BOV_0052	-	hypothetical protein
49	 59.72	0	60818..61321	-	167	148559046	-	BOV_0051	-	hypothetical protein
50	 61.35	+1	61658..61864	-	68	148560174	-	BOV_0053	-	hypothetical protein
51	 58.52	0	61875..62930	-	351	148560267	-	BOV_0054	-	hypothetical protein
52	 59.65	0	63014..63412	-	132	148560554	-	BOV_0055	-	hypothetical protein
53	 58.33	0	63644..64039	-	131	148559134	-	BOV_0056	-	glyoxalase family protein
54	 61.77	+1	64215..65399	+	394	148560560	-	BOV_0057	-	mrp-related protein
55	 57.67	0	65644..67344	-	566	148560001	pgm	BOV_0058	-	phosphoglucomutase
56	 59.96	0	67491..68384	-	297	148559455	-	BOV_0059	-	LysR family transcriptional regulator
57	 54.65	0	68509..69432	+	307	148560719	-	BOV_0060	-	dienelactone hydrolase domain-containing protein
58	 59.08	0	69505..70203	+	232	148560170	frcK	BOV_0061	-	putative fructose transport system kinase
59	 58.99	0	70303..70992	+	229	148559073	-	BOV_0062	-	fumarylacetoacetate hydrolase family protein
60	 52.60	-1	71012..71203	+	63	148560479	-	BOV_0063	-	hypothetical protein
61	 46.76	-2	71265..71480	+	71	148559012	-	BOV_0064	-	hypothetical protein
62	 51.85	-1	71646..71834	+	62	148559476	-	BOV_0065	-	hypothetical protein
63	 62.50	+1	71849..72712	+	287	148560311	-	BOV_0066	-	transglycosylase SLT domain-containing protein
64	 57.38	0	72894..73550	+	218	148559130	-	BOV_0067	-	hemolysin III family channel protein
65	 52.11	-1	79476..81776	+	766	148558881	-	BOV_0071	-	outer membrane protein
66	 52.40	-1	81763..82533	+	256	148560027	-	BOV_0072	-	hypothetical protein
67	 58.23	0	82612..83832	-	406	148559600	argG	BOV_0073	-	argininosuccinate synthase
68	 56.61	0	83854..84678	+	274	148559131	-	BOV_0074	-	LysE family amino acid efflux protein
69	 57.74	0	84682..85185	-	167	148560670	-	BOV_0075	-	hypothetical protein
70	 59.22	0	85219..86454	-	411	148559330	-	BOV_0076	-	hypothetical protein
71	 56.59	0	86714..87328	-	204	148559825	-	BOV_0077	-	hypothetical protein
72	 56.00	0	87335..87409	+	24	148560271	-	BOV_0078	-	hypothetical protein
73	 63.28	+1	87633..88016	-	127	148559753	-	BOV_0079	-	hypothetical protein
74	 55.10	0	88104..88397	-	97	148560302	phhB	BOV_0080	-	pterin-4-alpha-carbinolamine dehydratase
75	 55.45	0	88624..89229	+	201	148559337	-	BOV_0082	-	phosphotyrosine protein phosphatase
76	 61.42	+1	89139..89729	-	196	148560013	-	BOV_0081	-	2'-5' RNA ligase
77	 56.20	0	89910..90635	-	241	148560412	-	BOV_0083	-	lipase/acylhydrolase domain-containing protein
78	 61.73	+1	90782..91510	+	242	148560558	-	BOV_0084	-	ABC transporter, ATP-binding protein
79	 61.57	+1	91507..94056	+	849	148559401	-	BOV_0085	-	ABC transporter, permease protein
80	 57.99	0	94290..95027	+	245	148559281	-	BOV_0086	-	hypothetical protein
81	 59.26	0	95142..95681	+	179	148559908	pat	BOV_0087	-	phosphinothricin N-acetyltransferase
82	 54.73	0	95701..96102	-	133	148560313	-	BOV_0088	-	hypothetical protein
83	 57.39	0	96652..97470	-	272	148559472	-	BOV_0089	-	hypothetical protein
84	 57.02	0	97549..97662	+	37	148559351	-	BOV_0090	-	hypothetical protein
85	 60.27	0	97663..100350	-	895	148560741	acnA	BOV_0091	-	aconitate hydratase
86	 58.14	0	100685..101341	+	218	148559823	ccmA	BOV_0092	-	cytochrome c biogenesis protein CcmA
87	 62.31	+1	101341..102006	+	221	148559295	ccmB	BOV_0093	-	heme exporter protein CcmB
88	 58.17	0	102061..102849	+	262	148559503	ccmC	BOV_0094	-	heme exporter protein CcmC
89	 56.90	0	102846..103019	+	57	148560060	ccmD	BOV_0095	-	heme exporter protein CcmD
90	 59.31	0	103016..103627	+	203	148560073	cycY	BOV_0096	-	thioredoxin family thiol:disulfide interchange protein
91	 60.80	0	103876..105717	-	613	148560650	ilvD	BOV_0097	-	dihydroxy-acid dehydratase
92	 60.00	0	106570..106944	-	124	148559608	-	BOV_0099	-	putative response regulator
93	 50.83	-1	107122..107424	-	100	148560487	-	BOV_0100	-	putative transcriptional regulator
94	 57.04	0	108011..108415	+	134	148560112	-	BOV_0101	-	hypothetical protein
95	 57.16	0	108501..109205	-	234	148559265	-	BOV_0102	-	putative lipoprotein
96	 54.17	0	109305..110096	+	263	148560500	-	BOV_0103	-	hypothetical protein
97	 58.43	0	110374..111138	+	254	148559577	-	BOV_0104	-	sulfate-/thiosulfate-binding protein
98	 59.28	0	111233..112099	+	288	148559208	cysT-1	BOV_0105	-	sulfate ABC transporter, permease protein CysT
99	 59.05	0	112089..112955	+	288	148560228	cysW-1	BOV_0106	-	sulfate ABC transporter, permease protein CysW
100	 61.41	+1	112972..114132	+	386	148559456	-	BOV_0107	-	putative sulfate ABC transporter, ATP-binding protein
57.49	MEAN

3.63	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.