IslandPath Analysis: Mycobacterium avium subsp. paratuberculosis K-10



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.39   STD DEV: 3.47
Mycobacterium avium subsp. paratuberculosis K-10, complete genome - 1..4829781
4350 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.54	0	1..1530	+	509	41406099	dnaA	MAP0001	-	chromosomal replication initiation protein
2	 68.92	0	2100..3299	+	399	41406100	dnaN	MAP0002	-	DNA polymerase III subunit beta
3	 70.90	0	3300..4457	+	385	41406101	recF	MAP0003	-	recombination protein F
4	 75.25	+1	4499..4999	+	166	41406102	-	MAP0004	-	hypothetical protein
5	 64.01	-1	5258..7291	+	677	41406103	gyrB	MAP0005	-	DNA gyrase subunit B
6	 67.98	0	7303..9822	+	839	41406104	gyrA	MAP0006	-	DNA gyrase subunit A
7	 72.89	+1	9925..10776	+	283	41406105	-	MAP0007	-	hypothetical protein
8	 72.54	0	11146..11724	-	192	41406106	-	MAP0008c	-	hypothetical protein
9	 68.63	0	11810..13135	+	441	41406107	-	MAP0009	-	hypothetical protein
10	 76.55	+2	13137..13571	-	144	41406108	-	MAP0010c	-	hypothetical protein
11	 67.40	0	13662..14210	+	182	41406109	ppiA	MAP0011	-	PpiA
12	 68.31	0	14222..14647	-	141	41406110	-	MAP0012c	-	hypothetical protein
13	 60.99	-2	14804..15085	-	93	41406111	-	MAP0013c	-	putative septation inhibitor protein
14	 72.18	0	15216..15959	+	247	41406112	-	MAP0014	-	hypothetical protein
15	 69.00	0	16008..16694	+	228	41406113	pabA	MAP0015	-	para-aminobenzoate synthase component II
16	 68.42	0	16672..18552	-	626	41406114	pknB	MAP0016c	-	PknB
17	 78.63	+2	18549..19058	-	169	41406115	-	MAP0017c	-	hypothetical protein
18	 68.77	0	19070..19831	-	253	41406116	pknA	MAP0018c	-	PknA
19	 69.84	0	19828..21306	-	492	41406117	pbpA	MAP0019c	-	PbpA
20	 64.61	-1	21303..22712	-	469	41406118	rodA	MAP0020c	-	RodA
21	 71.60	0	22709..24208	-	499	41406119	ppp	MAP0021c	-	Ppp
22	 65.81	-1	24273..24740	-	155	41406120	-	MAP0022c	-	hypothetical protein
23	 70.95	0	24865..26499	-	544	41406121	-	MAP0023c	-	hypothetical protein
24	 67.87	0	26932..27597	-	221	41406122	-	MAP0024c	-	hypothetical protein
25	 61.36	-2	27648..27911	+	87	41406123	-	MAP0025	-	acyl carrier protein
26	 69.30	0	27908..29464	+	518	41406124	fadD33_1	MAP0026	-	acyl-CoA synthetase
27	 65.67	-1	29619..31517	+	632	41406125	-	MAP0027	-	hypothetical protein
28	 63.92	-1	32641..33876	-	411	41406126	-	MAP0028c	-	hypothetical protein
29	 70.52	0	35295..36539	-	414	41406127	-	MAP0029c	-	hypothetical protein
30	 61.21	-2	36594..36923	-	109	41406128	-	MAP0030c	-	hypothetical protein
31	 68.48	0	36910..37902	-	330	41406129	-	MAP0031c	-	hypothetical protein
32	 67.39	0	37908..39290	-	460	41406130	fadE25_1	MAP0032c	-	FadE25_1
33	 72.90	+1	39384..39800	-	138	41406131	-	MAP0033c	-	hypothetical protein
34	 67.16	0	40022..41242	+	406	41406132	-	MAP0034	-	hypothetical protein
35	 68.19	0	41395..42183	+	262	41406133	-	MAP0035	-	hypothetical protein
36	 72.24	0	42180..43004	+	274	41406134	-	MAP0036	-	hypothetical protein
37	 68.32	0	43053..43415	+	120	41406135	-	MAP0037	-	hypothetical protein
38	 70.45	0	43531..44982	+	483	41406136	-	MAP0038	-	hypothetical protein
39	 65.09	-1	45033..45350	+	105	41406137	-	MAP0039	-	hypothetical protein
40	 65.38	-1	45347..45658	+	103	41406138	-	MAP0040	-	hypothetical protein
41	 72.54	0	45918..47552	+	544	41406139	-	MAP0041	-	hypothetical protein
42	 67.28	0	47604..47927	+	107	41406140	-	MAP0042	-	hypothetical protein
43	 75.06	+1	47969..48742	-	257	41406141	-	MAP0043c	-	hypothetical protein
44	 71.02	0	48800..50086	-	428	41406142	-	MAP0044c	-	hypothetical protein
45	 69.64	0	50217..50822	+	201	41406143	-	MAP0045	-	hypothetical protein
46	 75.73	+1	50838..51179	-	113	41406144	-	MAP0046c	-	hypothetical protein
47	 72.22	0	51235..52458	-	407	41406145	-	MAP0047c	-	hypothetical protein
48	 68.73	0	52505..55414	+	969	41406146	leuS	MAP0048	-	leucyl-tRNA synthetase
49	 69.05	0	55421..56092	-	223	41406147	-	MAP0049c	-	short chain dehydrogenase
50	 68.85	0	56151..56699	-	182	41406148	-	MAP0050c	-	hypothetical protein
51	 65.60	-1	56721..57467	-	248	41406149	gluA	MAP0051c	-	GluA
52	 68.91	0	57464..59203	-	579	41406150	glnQ	MAP0052c	-	hypothetical protein
53	 68.29	0	59323..60063	-	246	41406151	-	MAP0053c	-	hypothetical protein
54	 68.82	0	60182..60970	-	262	41406152	-	MAP0054c	-	hypothetical protein
55	 69.84	0	60978..61892	-	304	41406153	-	MAP0055c	-	hypothetical protein
56	 68.53	0	61916..63151	-	411	41406154	-	MAP0056c	-	hypothetical protein
57	 71.14	0	63154..63957	-	267	41406155	-	MAP0057c	-	hypothetical protein
58	 67.54	0	63959..65101	-	380	41406156	-	MAP0058c	-	hypothetical protein
59	 69.68	0	65125..66252	-	375	41406157	-	MAP0059c	-	hypothetical protein
60	 65.94	0	66384..67490	-	368	41406158	-	MAP0060c	-	hypothetical protein
61	 67.03	0	67550..68092	-	180	41406159	-	MAP0061c	-	hypothetical protein
62	 70.40	0	68239..69123	-	294	41406160	-	MAP0062c	-	hypothetical protein
63	 69.06	0	69266..69682	+	138	41406161	-	MAP0063	-	hypothetical protein
64	 70.24	0	69679..72312	+	877	41406162	ponA_1	MAP0064	-	PonA_1
65	 68.86	0	72309..73946	+	545	41406163	-	MAP0065	-	hypothetical protein
66	 70.25	0	73943..74584	+	213	41406164	-	MAP0066	-	hypothetical protein
67	 62.89	-1	74719..75009	+	96	41406165	rpsF	MAP0067	-	30S ribosomal protein S6
68	 71.01	0	75127..75633	+	168	41406166	ssb	MAP0068	-	single-strand DNA-binding protein
69	 62.75	-1	75675..75929	+	84	41406167	rpsR	MAP0069	-	30S ribosomal protein S18
70	 69.06	0	75960..76418	+	152	41406168	rplI	MAP0070	-	50S ribosomal protein L9
71	 65.49	-1	76950..79577	+	875	41406169	dnaB	MAP0071	-	hypothetical protein
72	 60.92	-2	79717..80604	-	295	41406170	-	MAP0072c	-	hypothetical protein
73	 67.04	0	80690..81499	-	269	41406171	-	MAP0073c	-	hypothetical protein
74	 69.30	0	81582..82151	+	189	41406172	-	MAP0074	-	hypothetical protein
75	 66.19	0	83657..84079	+	140	41406173	-	MAP0075	-	hypothetical protein
76	 65.20	-1	84088..87009	+	973	41406174	mmpL4_1	MAP0076	-	MmpL4_1
77	 68.11	0	87226..88332	+	368	41406175	-	MAP0077	-	hypothetical protein
78	 72.83	0	88415..88690	+	91	41406176	-	MAP0078	-	hypothetical protein
79	 68.02	0	88710..89450	+	246	41406177	-	MAP0079	-	hypothetical protein
80	 67.30	0	89479..90114	-	211	41406178	-	MAP0080c	-	hypothetical protein
81	 69.63	0	90461..91777	+	438	41406179	-	MAP0081	-	hypothetical protein
82	 66.37	0	92165..92842	+	225	41406180	-	MAP0082	-	hypothetical protein
83	 67.57	0	92839..93282	-	147	41406181	-	MAP0083c	-	hypothetical protein
84	 67.01	0	93303..94178	-	291	41406182	-	MAP0084c	-	hypothetical protein
85	 70.58	0	94329..95171	-	280	41406183	LysR	MAP0085c	-	hypothetical protein
86	 69.88	0	95335..96267	+	310	41406184	-	MAP0086	-	hypothetical protein
87	 65.55	-1	96357..97073	+	238	41406185	-	MAP0087	-	hypothetical protein
88	 60.50	-2	97261..97698	+	145	41406186	-	MAP0088	-	hypothetical protein
89	 64.77	-1	97733..98311	+	192	41406187	-	MAP0089	-	hypothetical protein
90	 66.98	0	98324..98962	-	212	41406188	-	MAP0090c	-	hypothetical protein
91	 62.72	-1	99010..99693	-	227	41406189	-	MAP0091c	-	hypothetical protein
92	 66.21	0	99947..100816	+	289	41406190	-	MAP0092	-	hypothetical protein
93	 65.53	-1	100818..101345	+	175	41406191	-	MAP0093	-	hypothetical protein
94	 66.32	0	101555..101839	+	94	41406192	-	MAP0094	-	hypothetical protein
95	 64.58	-1	102968..103495	-	175	41406193	nuoI_1	MAP0095c	-	NADH dehydrogenase subunit I
96	 61.26	-2	103696..104028	-	110	41406194	-	MAP0096c	-	hypothetical protein
97	 63.44	-1	104057..104644	-	195	41406195	-	MAP0097c	-	hypothetical protein
98	 66.67	0	104739..105512	-	257	41406196	-	MAP0098c	-	hypothetical protein
99	 62.07	-2	106041..106214	+	57	41406197	-	MAP0099	-	hypothetical protein
100	 61.04	-2	107007..107504	+	165	41406198	-	MAP0100	-	hypothetical protein
69.39	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.