IslandPath Analysis: Clostridium phytofermentans ISDg



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.95   STD DEV: 3.36
Clostridium phytofermentans ISDg, complete genome - 1..4847594
3902 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.97	0	75..1436	+	453	160878163	-	Cphy_0001	-	chromosomal replication initiator protein DnaA
2	 30.28	-1	1849..2961	+	370	160878164	-	Cphy_0002	-	DNA polymerase III, beta subunit
3	 32.41	-1	3099..3314	+	71	160878165	-	Cphy_0003	-	RNA-binding S4 domain-containing protein
4	 33.15	0	3870..4952	+	360	160878166	-	Cphy_0004	-	DNA replication and repair protein RecF
5	 37.12	0	4986..6914	+	642	160878167	-	Cphy_0005	-	DNA gyrase, B subunit
6	 36.89	0	6932..9631	+	899	160878168	-	Cphy_0006	-	DNA gyrase, A subunit
7	 37.72	0	9911..10753	+	280	160878169	-	Cphy_0007	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
8	 36.43	0	10807..11355	+	182	160878170	-	Cphy_0008	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
9	 35.39	0	11434..11871	+	145	160878171	-	Cphy_0009	-	BadM/Rrf2 family transcriptional regulator
10	 35.20	0	12344..13630	+	428	160878172	-	Cphy_0010	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
11	 37.30	0	13672..14604	+	310	160878173	-	Cphy_0011	-	cysteine synthase A
12	 34.69	0	22337..23074	+	245	160878174	-	Cphy_0012	-	NAD-dependent deacetylase
13	 34.56	0	23329..23982	+	217	160878175	-	Cphy_0013	-	transaldolase
14	 38.98	0	24186..26168	+	660	160878176	-	Cphy_0014	-	transketolase
15	 34.93	0	26532..27218	+	228	160878177	-	Cphy_0015	-	two component transcriptional regulator
16	 34.24	0	27208..28647	+	479	160878178	-	Cphy_0016	-	integral membrane sensor signal transduction histidine kinase
17	 36.20	0	29061..30842	-	593	160878179	-	Cphy_0017	-	ABC transporter related
18	 36.03	0	30987..32732	-	581	160878180	-	Cphy_0018	-	ABC transporter related
19	 31.42	-1	33488..33748	+	86	160878181	-	Cphy_0019	-	hypothetical protein
20	 32.48	-1	33777..34718	+	313	160878182	-	Cphy_0020	-	RelA/SpoT domain-containing protein
21	 35.64	0	34946..35857	-	303	160878183	-	Cphy_0021	-	RNA-binding S1 domain-containing protein
22	 36.19	0	36006..36809	+	267	160878184	-	Cphy_0022	-	NUDIX hydrolase
23	 35.51	0	36983..37717	-	244	160878185	-	Cphy_0023	-	hypothetical protein
24	 37.11	0	38095..39390	+	431	160878186	-	Cphy_0024	-	putative aminopeptidase 2
25	 37.14	0	40543..42537	+	664	160878187	-	Cphy_0025	-	methionyl-tRNA synthetase
26	 30.56	-1	42711..42926	-	71	160878188	-	Cphy_0026	-	hypothetical protein
27	 33.71	0	43272..43535	+	87	160878189	-	Cphy_0027	-	hypothetical protein
28	 35.99	0	44224..44937	+	237	160878190	-	Cphy_0029	-	methyltransferase type 11
29	 30.38	-1	44956..45768	+	270	160878191	-	Cphy_0030	-	hypothetical protein
30	 34.87	0	46157..47131	+	324	160878192	-	Cphy_0031	-	hypothetical protein
31	 39.75	+1	47419..48633	+	404	160878193	-	Cphy_0032	-	type II secretion system protein E
32	 29.97	-1	48724..49467	+	247	160878194	-	Cphy_0033	-	Flp pilus assembly protein TadB-like protein
33	 36.69	0	49484..50941	+	485	160878195	-	Cphy_0034	-	hypothetical protein
34	 29.41	-1	51057..51260	+	67	160878196	-	Cphy_0035	-	hypothetical protein
35	 34.78	0	51273..53756	+	827	160878197	-	Cphy_0036	-	hypothetical protein
36	 35.52	0	53921..54835	+	304	160878198	-	Cphy_0037	-	hypothetical protein
37	 35.17	0	54915..55349	+	144	160878199	-	Cphy_0038	-	peptidase A24A prepilin type IV
38	 30.72	-1	55496..56068	+	190	160878200	-	Cphy_0039	-	hypothetical protein
39	 32.64	0	56324..58066	+	580	160878201	-	Cphy_0040	-	FHA domain-containing protein
40	 41.20	+1	58361..59860	+	499	160878202	-	Cphy_0041	-	glycerol kinase
41	 37.20	0	59873..61063	+	396	160878203	-	Cphy_0042	-	rhomboid family protein
42	 36.72	0	61053..62057	+	334	160878204	-	Cphy_0043	-	hypothetical protein
43	 29.26	-1	62196..62465	+	89	160878205	-	Cphy_0044	-	hypothetical protein
44	 35.08	0	62635..63609	+	324	160878206	-	Cphy_0045	-	hypothetical protein
45	 37.48	0	63796..65364	+	522	160878207	-	Cphy_0046	-	DNA polymerase III, subunits gamma and tau
46	 41.39	+1	65391..65750	+	119	160878208	-	Cphy_0047	-	hypothetical protein
47	 40.20	+1	66208..66804	+	198	160878209	-	Cphy_0048	-	recombination protein RecR
48	 34.86	0	66922..68031	+	369	160878210	-	Cphy_0049	-	hypothetical protein
49	 36.36	0	68096..68689	-	197	160878211	-	Cphy_0050	-	sporulation protein YyaC
50	 36.08	0	69062..70372	+	436	160878212	-	Cphy_0051	-	peptidoglycan-binding LysM
51	 34.42	0	70537..71733	+	398	160878213	-	Cphy_0052	-	hypothetical protein
52	 31.77	-1	71737..72438	+	233	160878214	-	Cphy_0053	-	hypothetical protein
53	 40.39	+1	72635..73597	+	320	160878215	-	Cphy_0054	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
54	 33.78	0	73980..75317	+	445	160878216	-	Cphy_0055	-	hypothetical protein
55	 25.69	-2	81998..82324	+	108	160878217	-	Cphy_0056	-	hypothetical protein
56	 28.94	-2	82305..82850	-	181	160878218	-	Cphy_0057	-	hypothetical protein
57	 39.97	+1	83519..85855	+	778	160878219	-	Cphy_0058	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
58	 35.01	0	85842..86678	+	278	160878220	-	Cphy_0059	-	molybdopterin dehydrogenase FAD-binding
59	 39.45	+1	86662..87135	+	157	160878221	-	Cphy_0060	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
60	 35.22	0	87449..87607	+	52	160878222	-	Cphy_0061	-	hypothetical protein
61	 34.68	0	87739..88626	-	295	160878223	-	Cphy_0062	-	prolipoprotein diacylglyceryl transferase
62	 37.55	0	89122..89832	+	236	160878224	-	Cphy_0063	-	phosphotransferase domain-containing protein
63	 35.08	0	89917..90717	-	266	160878225	-	Cphy_0064	-	XRE family transcriptional regulator
64	 39.05	0	90930..91751	-	273	160878226	-	Cphy_0065	-	XRE family transcriptional regulator
65	 34.67	0	92474..93670	-	398	160878227	-	Cphy_0066	-	hypothetical protein
66	 36.52	0	93690..96077	-	795	160878228	-	Cphy_0067	-	hypothetical protein
67	 34.94	0	96504..98186	+	560	160878229	-	Cphy_0068	-	cell wall hydrolase/autolysin
68	 42.51	+1	98284..98904	+	206	160878230	-	Cphy_0069	-	hypothetical protein
69	 39.57	+1	99198..100577	+	459	160878231	-	Cphy_0070	-	peptidase U62 modulator of DNA gyrase
70	 36.24	0	100774..102117	+	447	160878232	-	Cphy_0071	-	peptidase U62 modulator of DNA gyrase
71	 37.26	0	102256..103299	+	347	160878233	-	Cphy_0072	-	hypothetical protein
72	 37.76	0	103427..103810	+	127	160878234	-	Cphy_0073	-	GntR family transcriptional regulator
73	 33.11	0	103800..104237	+	145	160878235	-	Cphy_0074	-	hypothetical protein
74	 34.52	0	104245..105003	+	252	160878236	-	Cphy_0075	-	hypothetical protein
75	 38.63	0	105399..106172	+	257	160878237	-	Cphy_0076	-	ABC transporter related
76	 35.51	0	106174..107232	+	352	160878238	-	Cphy_0077	-	ABC-2 type transporter
77	 35.63	0	107229..108488	+	419	160878239	-	Cphy_0078	-	ABC-2 type transporter
78	 35.49	0	108728..109885	+	385	160878240	-	Cphy_0079	-	integral membrane sensor signal transduction histidine kinase
79	 38.65	0	109893..110531	+	212	160878241	-	Cphy_0080	-	two component LuxR family transcriptional regulator
80	 41.94	+1	110768..111313	+	181	160878242	-	Cphy_0081	-	rubrerythrin
81	 38.27	0	111417..111740	+	107	160878243	-	Cphy_0082	-	hypothetical protein
82	 37.70	0	111752..112369	+	205	160878244	-	Cphy_0083	-	flavin reductase domain-containing protein
83	 36.66	0	112892..113914	+	340	160878245	-	Cphy_0084	-	D-alanine--D-alanine ligase
84	 32.72	0	114069..115049	+	326	160878246	-	Cphy_0085	-	hypothetical protein
85	 40.32	+1	115163..115348	-	61	160878247	-	Cphy_0086	-	hypothetical protein
86	 41.61	+1	115437..117140	-	567	160878248	-	Cphy_0087	-	hydrogenase, Fe-only
87	 41.44	+1	117158..119044	-	628	160878249	-	Cphy_0088	-	NADH dehydrogenase (quinone)
88	 39.09	0	119038..119523	-	161	160878250	-	Cphy_0089	-	NADH dehydrogenase (ubiquinone) 24 kDa subunit
89	 40.41	+1	120033..121487	-	484	160878251	-	Cphy_0090	-	ferredoxin hydrogenase
90	 38.79	0	121534..122706	-	390	160878252	-	Cphy_0091	-	protein serine/threonine phosphatase
91	 39.56	+1	122755..124488	-	577	160878253	-	Cphy_0092	-	putative PAS/PAC sensor protein
92	 37.86	0	124488..124730	-	80	160878254	-	Cphy_0093	-	hypothetical protein
93	 37.72	0	124837..125703	-	288	160878255	-	Cphy_0094	-	DegV family protein
94	 37.70	0	126311..127729	+	472	160878256	-	Cphy_0095	-	asparaginyl-tRNA synthetase
95	 36.61	0	127890..128408	-	172	160878257	-	Cphy_0096	-	hypothetical protein
96	 36.18	0	129389..129880	+	163	160878258	-	Cphy_0097	-	XRE family transcriptional regulator
97	 32.14	-1	130233..131072	-	279	160878259	-	Cphy_0098	-	MerR family transcriptional regulator
98	 35.88	0	131424..133151	+	575	160878260	-	Cphy_0099	-	ABC transporter related
99	 36.52	0	133148..134902	+	584	160878261	-	Cphy_0100	-	ABC transporter related
100	 36.01	0	135190..136272	-	360	160878262	-	Cphy_0101	-	metal dependent phosphohydrolase
35.95	MEAN

3.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.