IslandPath Analysis: Prochlorococcus marinus str. MIT 9313



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.75   STD DEV: 4.82
Prochlorococcus marinus str. MIT 9313, complete genome - 1..2410873
2269 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.33	-1	174..1340	+	388	33862274	dnaN	PMT0001	-	DNA polymerase III subunit beta
2	 48.58	0	1380..2120	+	246	33862275	-	PMT0002	-	hypothetical protein
3	 45.58	-1	2178..4562	+	794	33862276	purL	PMT0003	-	phosphoribosylformylglycinamidine synthase II
4	 42.39	-1	4622..6079	+	485	33862277	purF	PMT0004	-	amidophosphoribosyltransferase
5	 47.83	0	6115..8604	-	829	33862278	-	PMT0005	-	DNA gyrase/topoisomerase IV, subunit A
6	 51.01	0	8682..9575	-	297	33862279	-	PMT0006	-	hypothetical protein
7	 51.18	0	9585..10559	-	324	33862280	-	PMT0007	-	hypothetical protein
8	 51.22	0	10646..11260	+	204	33862281	-	PMT0008	-	hypothetical protein
9	 47.73	0	11333..12082	+	249	33862282	-	PMT0009	-	hypothetical protein
10	 47.53	0	12079..12747	+	222	33862283	nusB	PMT0010	-	transcription antitermination protein NusB
11	 49.69	0	12747..14201	+	484	33862284	ftsY	PMT0011	-	signal recognition particle docking protein FtsY
12	 52.64	0	14264..15667	+	467	33862285	-	PMT0012	-	protein phosphatase 2C domain-containing protein
13	 50.39	0	15697..17109	+	470	33862286	argH	PMT0013	-	argininosuccinate lyase
14	 60.50	+1	17233..17832	+	199	33862287	-	PMT0014	-	RNA recognition motif-containing protein
15	 53.04	0	17842..18861	-	339	33862288	-	PMT0015	-	tRNA-dihydrouridine synthase A
16	 51.68	0	18916..19422	+	168	33862289	-	PMT0016	-	hypothetical protein
17	 54.80	0	19349..20671	+	440	33862290	-	PMT0017	-	hypothetical protein
18	 48.40	0	20646..21926	-	426	33862291	pilC	PMT0018	-	pili biogenesis protein
19	 50.88	0	21943..23019	-	358	33862292	pilT1	PMT0019	-	homologous to PilT1 protein
20	 52.84	0	23030..24946	-	638	33862293	gspE1	PMT0020	-	general secretion pathway protein E
21	 52.80	0	24945..25658	+	237	33862294	grpE	PMT0021	-	heat shock protein GrpE
22	 51.63	0	25703..26839	+	378	33862295	dnaJ	PMT0022	-	DnaJ protein
23	 52.03	0	26836..27081	+	81	33862296	-	PMT0023	-	hypothetical protein
24	 53.93	0	27068..28033	+	321	33862297	-	PMT0024	-	hypothetical protein
25	 54.97	0	27990..28331	-	113	33862298	-	PMT0025	-	hypothetical protein
26	 54.76	0	28356..29279	-	307	33862299	murB	PMT0026	-	UDP-N-acetylenolpyruvoylglucosamine reductase
27	 52.62	0	29255..30721	-	488	33862300	murC	PMT0027	-	UDP-N-acetylmuramate-alanine ligase
28	 49.51	0	30785..31915	+	376	33862301	gap2	PMT0028	-	glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating)
29	 54.67	0	32003..32986	-	327	33862302	thiL	PMT0029	-	putative thiamine monophosphate kinase
30	 49.68	0	32997..34079	-	360	33862303	-	PMT0030	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
31	 49.55	0	34145..34705	+	186	33862304	efp	PMT0031	-	elongation factor P
32	 53.74	0	34705..35199	+	164	33862305	accB	PMT0032	-	biotin / lipoyl attachment:Acetyl-CoA biotin carboxyl carrier subunit
33	 54.65	0	35200..36231	-	343	33862306	pdxA	PMT0033	-	4-hydroxythreonine-4-phosphate dehydrogenase
34	 53.31	0	36414..37334	-	306	33862307	-	PMT0034	-	hypothetical protein
35	 52.85	0	37343..37588	+	81	33862308	-	PMT0035	-	Squash family serine protease inhibitor
36	 49.50	0	37596..37997	-	133	33862309	-	PMT0036	-	HNH endonuclease:HNH nuclease
37	 53.96	0	38153..39781	+	542	33862310	-	PMT0037	-	SNF2/helicase domain-containing protein
38	 46.98	0	40109..40555	-	148	33862311	-	PMT0038	-	penicillin amidase
39	 54.26	0	40618..41133	-	171	33862312	-	PMT0039	-	hypothetical protein
40	 47.95	0	41162..41551	+	129	33862313	-	PMT0040	-	methyl-accepting chemotaxis protein
41	 50.65	0	41589..41819	+	76	33862314	-	PMT0041	-	hypothetical protein
42	 48.89	0	41954..42178	+	74	33862315	-	PMT0042	-	hypothetical protein
43	 52.92	0	42402..43550	-	382	33862316	DHSS	PMT0043	-	soluble hydrogenase small subunit
44	 55.12	0	43635..44786	+	383	33862317	cbiD	PMT0044	-	cobalt-precorrin-6A synthase
45	 49.91	0	44827..46413	+	528	33862318	guaA	PMT0045	-	bifunctional GMP synthase/glutamine amidotransferase protein
46	 51.63	0	46883..47494	+	203	33862319	-	PMT0046	-	hypothetical protein
47	 53.73	0	47510..47911	+	133	33862320	-	PMT0047	-	hypothetical protein
48	 53.58	0	47917..49719	+	600	33862321	-	PMT0048	-	putative penicillin-binding protein
49	 55.45	0	49755..50984	-	409	33862322	sqdX	PMT0049	-	SqdX
50	 54.05	0	50930..52126	-	398	33862323	sqdB	PMT0050	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
51	 54.76	0	52186..52353	-	55	33862324	-	PMT0051	-	high light inducible protein
52	 55.84	0	52427..53359	-	310	33862325	thiG	PMT0052	-	thiazole synthase
53	 52.29	0	53400..53879	+	159	33862326	-	PMT0053	-	hypothetical protein
54	 50.71	0	53847..54410	-	187	33862327	-	PMT0054	-	putative photosystem I assembly related protein Ycf37
55	 54.02	0	55427..55774	-	115	33862328	rplT	PMT0055	-	50S ribosomal protein L20
56	 52.53	0	55846..56043	-	65	33862329	rpmI	PMT0056	-	50S ribosomal protein L35
57	 55.43	0	56107..57717	+	536	33862330	-	PMT0057	-	putative amidase enhancer
58	 53.38	0	57742..59073	+	443	33862331	-	PMT0058	-	glycosyl transferase family protein
59	 55.68	0	59078..60898	-	606	33862332	dnaX	PMT0059	-	DNA polymerase, gamma and tau subunits
60	 53.80	0	60922..61605	-	227	33862333	-	PMT0060	-	hypothetical protein
61	 54.16	0	61610..62968	-	452	33862334	clpX	PMT0061	-	ATP-dependent protease ATP-binding subunit
62	 54.22	0	63057..63731	-	224	33862335	clpP2	PMT0062	-	Clp protease proteolytic subunit
63	 51.94	0	63778..65217	-	479	33862336	tig	PMT0063	-	trigger factor
64	 54.66	0	65391..66323	+	310	33862337	asd	PMT0064	-	aspartate semialdehyde dehydrogenase
65	 55.67	0	66420..67328	+	302	33862338	dapA	PMT0065	-	dihydrodipicolinate synthase
66	 50.15	0	67429..69432	+	667	33862339	-	PMT0066	-	hypothetical protein
67	 46.76	-1	69418..70527	-	369	33862340	-	PMT0067	-	hypothetical protein
68	 53.88	0	70488..71519	-	343	33862341	-	PMT0068	-	hypothetical protein
69	 56.24	0	71603..72379	+	258	33862342	ycf23	PMT0069	-	hypothetical protein
70	 51.67	0	72424..72843	+	139	33862343	-	PMT0070	-	hypothetical protein
71	 46.81	-1	72948..74987	+	679	33862344	uvrB	PMT0071	-	excinuclease ABC subunit B
72	 47.92	0	75337..75576	+	79	33862345	-	PMT0072	-	FAD binding domain-containing protein
73	 57.10	+1	75605..77392	-	595	33862346	lysC	PMT0073	-	aspartate kinase
74	 56.87	+1	77441..78451	-	336	33862347	-	PMT0074	-	DNA polymerase III subunit delta
75	 57.69	+1	78517..79140	+	207	33862348	cobH	PMT0075	-	putative precorrin-8X methylmutase CobH
76	 48.72	0	79135..80310	-	391	33862349	-	PMT0076	-	transporter component
77	 53.72	0	80312..83239	-	975	33862350	-	PMT0077	-	multidrug ABC transporter
78	 51.44	0	83236..83997	-	253	33862351	-	PMT0078	-	hypothetical protein
79	 56.72	+1	84051..86834	-	927	33862352	mutS	PMT0079	-	DNA mismatch repair protein
80	 46.27	-1	86991..87191	+	66	33862353	psbZ	PMT0080	-	putative photosystem II reaction center protein Z
81	 51.81	0	87244..87741	+	165	33862354	ribH	PMT0081	-	riboflavin synthase subunit beta
82	 54.41	0	87907..88371	-	154	33862355	-	PMT0082	-	putative acetyltransferase, GNAT family
83	 52.62	0	88626..91472	+	948	33862356	secA	PMT0083	-	preprotein translocase subunit SecA
84	 47.73	0	91775..91906	+	43	33862357	-	PMT0084	-	putative glucose-1-phosphate thymidylyltransferase
85	 43.04	-1	91963..92745	+	260	33862358	-	PMT0085	-	glycosyltransferase
86	 43.58	-1	93599..94525	+	308	33862359	-	PMT0086	-	UDP-glucose-4-epimerase
87	 40.05	-2	94522..96738	-	738	33862360	-	PMT0087	-	glycosyltransferase
88	 41.64	-2	96948..98018	+	356	33862361	-	PMT0088	-	protease
89	 39.55	-2	98011..99216	+	401	33862362	-	PMT0089	-	acyltransferase
90	 51.19	0	99535..101931	+	798	33862363	-	PMT0090	-	hypothetical protein
91	 36.74	-2	102059..104140	+	693	33862364	-	PMT0091	-	hypothetical protein
92	 37.87	-2	104143..104892	+	249	33862365	-	PMT0092	-	hypothetical protein
93	 39.58	-2	104892..107837	+	981	33862366	-	PMT0093	-	multidrug efflux family ABC transporter
94	 39.90	-2	107834..109219	+	461	33862367	-	PMT0094	-	transporter for efflux
95	 40.39	-2	109248..110267	+	339	33862368	-	PMT0095	-	capsular polysaccharide biosynthesis protein
96	 40.10	-2	110264..111430	+	388	33862369	-	PMT0096	-	capsular polysaccharide biosynthesis protein
97	 41.58	-2	111427..112323	+	298	33862370	-	PMT0097	-	hypothetical protein
98	 41.67	-2	112330..113577	+	415	33862371	-	PMT0098	-	LPS biosynthesis protein
99	 42.09	-2	113580..114230	+	216	33862372	HisH	PMT0099	-	imidazoleglycerol-phosphate synthase, glutamine amidotransferase subunit
100	 43.64	-1	114224..115009	+	261	33862373	hisF	PMT0100	-	imidazoleglycerol-phosphate synthase, cyclase subunit
51.75	MEAN

4.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.