IslandPathversion 1.0

IslandPath Analysis: Rhodoferax ferrireducens T118



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.13 STD DEV: 4.20
Rhodoferax ferrireducens T118, complete genome - 1..4712337
4170 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.08	-1	7..1419	+	470	89898823	-	Rfer_0001	-	chromosomal replication initiator protein DnaA
2	 55.53	-1	1515..2618	+	367	89898824	-	Rfer_0002	-	DNA polymerase III, beta subunit
3	 59.82	0	2723..5335	+	870	89898825	-	Rfer_0003	-	DNA gyrase, B subunit
4	 51.52	-2	5397..5825	-	142	89898826	-	Rfer_0004	-	signal-transduction protein
5	 62.25	0	6309..7871	+	520	89898827	-	Rfer_0005	-	diguanylate cyclase
6	 63.56	0	7888..8466	+	192	89898828	-	Rfer_0006	-	NnrU
7	 64.23	0	8487..11159	+	890	89898829	-	Rfer_0007	-	GCN5-related N-acetyltransferase
8	 52.11	-1	11152..11364	-	70	89898830	-	Rfer_0008	-	hypothetical protein
9	 64.79	+1	11364..12215	-	283	89898831	-	Rfer_0009	-	integral membrane protein
10	 60.38	0	12308..12673	+	121	89898832	-	Rfer_0010	-	glutaredoxin
11	 60.99	0	12743..13288	-	181	89898833	-	Rfer_0011	-	hypothetical protein
12	 61.84	0	13460..14371	+	303	89898834	rdgC	Rfer_0012	-	recombination associated protein
13	 56.75	0	14571..15326	-	251	89898835	-	Rfer_0013	-	GntR family transcriptional regulator
14	 60.75	0	15516..16868	+	450	89898836	-	Rfer_0014	-	fumarate lyase
15	 58.12	0	16906..18333	+	475	89898837	-	Rfer_0015	-	anion transporter
16	 62.96	0	18731..19351	+	206	89898838	-	Rfer_0016	-	TetR family transcriptional regulator
17	 63.91	0	19454..20614	+	386	89898839	-	Rfer_0017	-	iron-containing alcohol dehydrogenase
18	 66.76	+1	20653..21687	+	344	89898840	-	Rfer_0018	-	zinc-binding alcohol dehydrogenase
19	 63.92	0	21742..22434	+	230	89898841	-	Rfer_0019	-	ThiJ/PfpI
20	 62.49	0	22508..23584	+	358	89898842	-	Rfer_0020	-	hypothetical protein
21	 59.09	0	23634..23831	-	65	89898843	-	Rfer_0021	-	hypothetical protein
22	 66.96	+1	23927..24616	-	229	89898844	-	Rfer_0022	-	Crp/FNR family transcriptional regulator
23	 61.39	0	24678..25397	-	239	89898845	-	Rfer_0023	-	MerR family transcriptional regulator
24	 67.99	+1	25444..27717	+	757	89898846	-	Rfer_0024	-	heavy metal translocating P-type ATPase
25	 59.20	0	27784..28506	-	240	89898847	-	Rfer_0025	-	hypothetical protein
26	 62.27	0	28503..29048	-	181	89898848	-	Rfer_0026	-	hypothetical protein
27	 61.50	0	29130..29516	-	128	89898849	-	Rfer_0027	-	hypothetical protein
28	 61.73	0	29673..32813	-	1046	89898850	-	Rfer_0028	-	HsdR family type I site-specific deoxyribonuclease
29	 51.06	-2	32826..33959	-	377	89898851	-	Rfer_0029	-	hypothetical protein
30	 53.57	-1	33956..35299	-	447	89898852	-	Rfer_0030	-	restriction modification system DNA specificity subunit
31	 58.18	0	35292..36422	-	376	89898853	-	Rfer_0031	-	hypothetical protein
32	 59.51	0	36476..38110	-	544	89898854	-	Rfer_0032	-	N-6 DNA methylase
33	 56.16	0	38073..38348	-	91	89898855	-	Rfer_0033	-	hypothetical protein
34	 55.56	-1	38578..38838	-	86	89898856	-	Rfer_0034	-	cell division topological specificity factor MinE
35	 58.46	0	38843..39658	-	271	89898857	-	Rfer_0035	-	septum site-determining protein MinD
36	 62.09	0	39734..40519	-	261	89898858	-	Rfer_0036	-	septum site-determining protein MinC
37	 61.74	0	41353..42753	-	466	89898859	-	Rfer_0037	-	tetratricopeptide TPR_2
38	 59.40	0	42750..43217	-	155	89898860	-	Rfer_0038	-	cytochrome C biogenesis protein
39	 57.33	0	43214..43738	-	174	89898861	-	Rfer_0039	-	periplasmic protein thiol
40	 58.97	0	43735..45708	-	657	89898862	-	Rfer_0040	-	cytochrome c-type biogenesis protein CcmF
41	 58.33	0	45719..46162	-	147	89898863	-	Rfer_0041	-	CcmE/CycJ protein
42	 52.22	-1	46159..46338	-	59	89898864	-	Rfer_0042	-	Heme exporter protein D (CcmD)
43	 59.78	0	46325..47065	-	246	89898865	-	Rfer_0043	-	heme exporter protein CcmC
44	 62.13	0	47062..47745	-	227	89898866	-	Rfer_0044	-	heme exporter protein CcmB
45	 62.24	0	47742..48374	-	210	89898867	-	Rfer_0045	-	heme exporter protein CcmA
46	 56.48	0	48665..49135	+	156	89898868	-	Rfer_0046	-	cytochrome c family protein, putative
47	 61.74	0	49239..49847	-	202	89898869	-	Rfer_0047	-	glutathione S-transferase-like
48	 59.64	0	50035..51486	-	483	89898870	-	Rfer_0048	-	aldehyde dehydrogenase
49	 61.62	0	51689..53728	+	679	89898871	-	Rfer_0049	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
50	 62.81	0	53728..54402	+	224	89898872	-	Rfer_0050	-	methyltransferase GidB
51	 58.78	0	54656..55441	+	261	89898873	-	Rfer_0051	-	cobyrinic acid a,c-diamide synthase
52	 66.51	+1	55517..56152	+	211	89898874	-	Rfer_0052	-	hypothetical protein
53	 65.50	+1	56171..57112	+	313	89898875	-	Rfer_0053	-	parB-like partition proteins
54	 72.04	+2	57198..57941	+	247	89898876	-	Rfer_0054	-	methyltransferase type 12
55	 59.30	0	58043..58789	+	248	89898877	-	Rfer_0055	-	metal dependent phosphohydrolase
56	 62.94	0	58963..60168	+	401	89898878	-	Rfer_0056	-	putative lipoprotein
57	 65.88	+1	60184..60690	+	168	89898879	-	Rfer_0057	-	hypothetical protein
58	 58.22	0	60804..61241	-	145	89898880	-	Rfer_0058	-	TPR repeat-containing protein
59	 58.10	0	61322..62839	-	505	89898881	-	Rfer_0059	-	hypothetical protein
60	 58.58	0	62970..63674	-	234	89898882	-	Rfer_0060	-	Crp/FNR family transcriptional regulator
61	 66.43	+1	63721..64143	-	140