IslandPath Analysis: Rhodoferax ferrireducens T118



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.13   STD DEV: 4.20
Rhodoferax ferrireducens T118, complete genome - 1..4712337
4170 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.08	-1	7..1419	+	470	89898823	-	Rfer_0001	-	chromosomal replication initiator protein DnaA
2	 55.53	-1	1515..2618	+	367	89898824	-	Rfer_0002	-	DNA polymerase III, beta subunit
3	 59.82	0	2723..5335	+	870	89898825	-	Rfer_0003	-	DNA gyrase, B subunit
4	 51.52	-2	5397..5825	-	142	89898826	-	Rfer_0004	-	signal-transduction protein
5	 62.25	0	6309..7871	+	520	89898827	-	Rfer_0005	-	diguanylate cyclase
6	 63.56	0	7888..8466	+	192	89898828	-	Rfer_0006	-	NnrU
7	 64.23	0	8487..11159	+	890	89898829	-	Rfer_0007	-	GCN5-related N-acetyltransferase
8	 52.11	-1	11152..11364	-	70	89898830	-	Rfer_0008	-	hypothetical protein
9	 64.79	+1	11364..12215	-	283	89898831	-	Rfer_0009	-	integral membrane protein
10	 60.38	0	12308..12673	+	121	89898832	-	Rfer_0010	-	glutaredoxin
11	 60.99	0	12743..13288	-	181	89898833	-	Rfer_0011	-	hypothetical protein
12	 61.84	0	13460..14371	+	303	89898834	rdgC	Rfer_0012	-	recombination associated protein
13	 56.75	0	14571..15326	-	251	89898835	-	Rfer_0013	-	GntR family transcriptional regulator
14	 60.75	0	15516..16868	+	450	89898836	-	Rfer_0014	-	fumarate lyase
15	 58.12	0	16906..18333	+	475	89898837	-	Rfer_0015	-	anion transporter
16	 62.96	0	18731..19351	+	206	89898838	-	Rfer_0016	-	TetR family transcriptional regulator
17	 63.91	0	19454..20614	+	386	89898839	-	Rfer_0017	-	iron-containing alcohol dehydrogenase
18	 66.76	+1	20653..21687	+	344	89898840	-	Rfer_0018	-	zinc-binding alcohol dehydrogenase
19	 63.92	0	21742..22434	+	230	89898841	-	Rfer_0019	-	ThiJ/PfpI
20	 62.49	0	22508..23584	+	358	89898842	-	Rfer_0020	-	hypothetical protein
21	 59.09	0	23634..23831	-	65	89898843	-	Rfer_0021	-	hypothetical protein
22	 66.96	+1	23927..24616	-	229	89898844	-	Rfer_0022	-	Crp/FNR family transcriptional regulator
23	 61.39	0	24678..25397	-	239	89898845	-	Rfer_0023	-	MerR family transcriptional regulator
24	 67.99	+1	25444..27717	+	757	89898846	-	Rfer_0024	-	heavy metal translocating P-type ATPase
25	 59.20	0	27784..28506	-	240	89898847	-	Rfer_0025	-	hypothetical protein
26	 62.27	0	28503..29048	-	181	89898848	-	Rfer_0026	-	hypothetical protein
27	 61.50	0	29130..29516	-	128	89898849	-	Rfer_0027	-	hypothetical protein
28	 61.73	0	29673..32813	-	1046	89898850	-	Rfer_0028	-	HsdR family type I site-specific deoxyribonuclease
29	 51.06	-2	32826..33959	-	377	89898851	-	Rfer_0029	-	hypothetical protein
30	 53.57	-1	33956..35299	-	447	89898852	-	Rfer_0030	-	restriction modification system DNA specificity subunit
31	 58.18	0	35292..36422	-	376	89898853	-	Rfer_0031	-	hypothetical protein
32	 59.51	0	36476..38110	-	544	89898854	-	Rfer_0032	-	N-6 DNA methylase
33	 56.16	0	38073..38348	-	91	89898855	-	Rfer_0033	-	hypothetical protein
34	 55.56	-1	38578..38838	-	86	89898856	-	Rfer_0034	-	cell division topological specificity factor MinE
35	 58.46	0	38843..39658	-	271	89898857	-	Rfer_0035	-	septum site-determining protein MinD
36	 62.09	0	39734..40519	-	261	89898858	-	Rfer_0036	-	septum site-determining protein MinC
37	 61.74	0	41353..42753	-	466	89898859	-	Rfer_0037	-	tetratricopeptide TPR_2
38	 59.40	0	42750..43217	-	155	89898860	-	Rfer_0038	-	cytochrome C biogenesis protein
39	 57.33	0	43214..43738	-	174	89898861	-	Rfer_0039	-	periplasmic protein thiol
40	 58.97	0	43735..45708	-	657	89898862	-	Rfer_0040	-	cytochrome c-type biogenesis protein CcmF
41	 58.33	0	45719..46162	-	147	89898863	-	Rfer_0041	-	CcmE/CycJ protein
42	 52.22	-1	46159..46338	-	59	89898864	-	Rfer_0042	-	Heme exporter protein D (CcmD)
43	 59.78	0	46325..47065	-	246	89898865	-	Rfer_0043	-	heme exporter protein CcmC
44	 62.13	0	47062..47745	-	227	89898866	-	Rfer_0044	-	heme exporter protein CcmB
45	 62.24	0	47742..48374	-	210	89898867	-	Rfer_0045	-	heme exporter protein CcmA
46	 56.48	0	48665..49135	+	156	89898868	-	Rfer_0046	-	cytochrome c family protein, putative
47	 61.74	0	49239..49847	-	202	89898869	-	Rfer_0047	-	glutathione S-transferase-like
48	 59.64	0	50035..51486	-	483	89898870	-	Rfer_0048	-	aldehyde dehydrogenase
49	 61.62	0	51689..53728	+	679	89898871	-	Rfer_0049	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
50	 62.81	0	53728..54402	+	224	89898872	-	Rfer_0050	-	methyltransferase GidB
51	 58.78	0	54656..55441	+	261	89898873	-	Rfer_0051	-	cobyrinic acid a,c-diamide synthase
52	 66.51	+1	55517..56152	+	211	89898874	-	Rfer_0052	-	hypothetical protein
53	 65.50	+1	56171..57112	+	313	89898875	-	Rfer_0053	-	parB-like partition proteins
54	 72.04	+2	57198..57941	+	247	89898876	-	Rfer_0054	-	methyltransferase type 12
55	 59.30	0	58043..58789	+	248	89898877	-	Rfer_0055	-	metal dependent phosphohydrolase
56	 62.94	0	58963..60168	+	401	89898878	-	Rfer_0056	-	putative lipoprotein
57	 65.88	+1	60184..60690	+	168	89898879	-	Rfer_0057	-	hypothetical protein
58	 58.22	0	60804..61241	-	145	89898880	-	Rfer_0058	-	TPR repeat-containing protein
59	 58.10	0	61322..62839	-	505	89898881	-	Rfer_0059	-	hypothetical protein
60	 58.58	0	62970..63674	-	234	89898882	-	Rfer_0060	-	Crp/FNR family transcriptional regulator
61	 66.43	+1	63721..64143	-	140	89898883	-	Rfer_0061	-	phenylacetic acid degradation-related protein
62	 56.34	0	64247..65950	-	567	89898884	-	Rfer_0062	-	acyl-CoA dehydrogenase-like
63	 63.57	0	66180..66437	+	85	89898885	-	Rfer_0063	-	hypothetical protein
64	 65.39	+1	66445..68331	+	628	89898886	-	Rfer_0064	-	ferrous iron transport protein B
65	 67.01	+1	68336..68626	+	96	89898887	-	Rfer_0065	-	hypothetical protein
66	 65.26	+1	68690..69757	-	355	89898888	-	Rfer_0066	-	putative ammonia monooxygenase
67	 66.94	+1	69848..70219	+	123	89898889	-	Rfer_0067	-	hypothetical protein
68	 59.90	0	70250..70840	+	196	89898890	-	Rfer_0068	-	putative lipoprotein transmembrane
69	 62.55	0	70953..72239	-	428	89898891	-	Rfer_0069	-	uracil-xanthine permease
70	 59.22	0	72547..72801	-	84	89898892	-	Rfer_0070	-	17 kDa surface antigen
71	 62.35	0	72818..73465	-	215	89898893	-	Rfer_0071	-	hypothetical protein
72	 64.98	+1	73485..73958	-	157	89898894	-	Rfer_0072	-	17 kDa surface antigen
73	 59.90	0	73992..74582	-	196	89898895	-	Rfer_0073	-	transport-associated
74	 56.48	0	74835..75050	+	71	89898896	-	Rfer_0074	-	hypothetical protein
75	 61.41	0	75237..76511	+	424	89898897	-	Rfer_0075	-	hypothetical protein
76	 64.48	+1	76523..77026	-	167	89898898	-	Rfer_0076	-	CinA-like
77	 66.32	+1	77023..77604	-	193	89898899	-	Rfer_0077	-	phosphatidylglycerophosphatase A
78	 62.42	0	77643..79031	-	462	89898900	-	Rfer_0078	-	phospholipase D/transphosphatidylase
79	 64.43	+1	79028..81037	-	669	89898901	-	Rfer_0079	-	AsmA
80	 68.83	+2	81242..81565	-	107	89898902	-	Rfer_0080	-	collagen triple helix protein
81	 60.48	0	81897..82316	+	139	89898903	-	Rfer_0081	-	hypothetical protein
82	 70.43	+2	82418..83161	-	247	89898904	-	Rfer_0082	-	hypothetical protein
83	 56.89	0	84980..85756	+	258	89898905	-	Rfer_0084	-	ferredoxin--NADP(+) reductase
84	 65.08	+1	85846..86664	+	272	89898906	-	Rfer_0085	-	nucleotidyl transferase
85	 65.46	+1	86684..88093	+	469	89898907	-	Rfer_0086	-	peptidase M24
86	 60.62	0	88135..88647	+	170	89898908	-	Rfer_0087	-	thiol-disulfide isomerase-like protein
87	 60.09	0	88705..91500	-	931	89898909	-	Rfer_0088	-	pyruvate phosphate dikinase
88	 64.47	+1	91596..92597	-	333	89898910	-	Rfer_0089	-	proline iminopeptidase
89	 59.21	0	92806..93288	+	160	89898911	-	Rfer_0090	-	rubrerythrin
90	 62.42	0	93415..93579	+	54	89898912	-	Rfer_0091	-	rubredoxin-type Fe(Cys)4 protein
91	 66.51	+1	93595..94899	+	434	89898913	-	Rfer_0092	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
92	 60.00	0	94994..97303	+	769	89898914	-	Rfer_0093	-	malic enzyme
93	 56.74	0	97461..97853	+	130	89898915	-	Rfer_0094	-	guanine-specific ribonuclease N1 and T1
94	 55.33	-1	97888..98337	+	149	89898916	-	Rfer_0095	-	hypothetical protein
95	 59.80	0	98638..99423	-	261	89898917	-	Rfer_0096	-	dimethyladenosine transferase
96	 63.84	0	99450..100829	-	459	89898918	-	Rfer_0097	-	PpiC-type peptidyl-prolyl cis-trans isomerase
97	 60.21	0	100836..103235	-	799	89898919	-	Rfer_0098	-	organic solvent tolerance protein
98	 63.45	0	103322..104410	+	362	89898920	-	Rfer_0099	-	aminoglycoside phosphotransferase
99	 58.89	0	104452..104991	-	179	89898921	-	Rfer_0100	-	hypothetical protein
100	 60.67	0	105077..105526	-	149	89898922	-	Rfer_0101	-	hypothetical protein
60.13	MEAN

4.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.