IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.03	0	405..1751	+	448	119385558	dnaA	Pden_2833	-	chromosomal replication initiation protein
2	 67.47	0	1843..2961	+	372	119385559	-	Pden_2834	-	DNA polymerase III subunit beta
3	 72.14	+1	2958..4034	+	358	119385560	recF	Pden_2835	-	recombination protein F
4	 69.01	0	4068..5861	-	597	119385561	-	Pden_2836	-	adenine deaminase
5	 72.98	+1	5907..6635	+	242	119385562	recO	Pden_2837	-	DNA repair protein RecO
6	 69.27	0	6604..6987	-	127	119385563	-	Pden_2838	-	protein of unknown function DUF306, Meta and HslJ
7	 68.10	0	7020..7439	-	139	119385564	-	Pden_2839	-	protein of unknown function DUF306, Meta and HslJ
8	 67.87	0	7517..9172	-	551	119385565	-	Pden_2840	-	Acyl-CoA dehydrogenase
9	 68.09	0	9330..10103	+	257	119385566	-	Pden_2841	-	hypothetical protein
10	 69.36	0	10132..11280	+	382	119385567	-	Pden_2842	-	succinyl-diaminopimelate desuccinylase
11	 70.24	0	11277..11696	+	139	119385568	-	Pden_2843	-	GCN5-related N-acetyltransferase
12	 71.90	+1	11693..12208	+	171	119385569	-	Pden_2844	-	hypothetical protein
13	 65.94	0	12258..13637	+	459	119385570	-	Pden_2845	-	glutamate--cysteine ligase
14	 63.53	0	13690..14103	-	137	119385571	-	Pden_2846	-	hypothetical protein
15	 69.93	0	14216..14827	-	203	119385572	-	Pden_2847	-	TetR family transcriptional regulator
16	 64.95	0	14837..15127	-	96	119385573	-	Pden_2848	-	phosphotransferase system, phosphocarrier protein HPr
17	 62.21	-1	15124..15549	-	141	119385574	-	Pden_2849	-	PTS system fructose subfamily IIA component
18	 66.56	0	15574..16533	-	319	119385575	-	Pden_2850	-	hypothetical protein
19	 68.53	0	16542..16970	-	142	119385576	-	Pden_2851	-	HPr kinase
20	 65.10	0	17197..18795	+	532	119385577	-	Pden_2852	-	phosphoenolpyruvate carboxykinase
21	 68.74	0	18955..21219	-	754	119385578	-	Pden_2853	-	ribonuclease R
22	 68.92	0	21264..21485	-	73	119385579	-	Pden_2854	-	putative NAD-dependent formate dehydrogenase delta subunit protein
23	 73.36	+1	21492..22313	-	273	119385580	-	Pden_2855	-	formate dehydrogenase family accessory protein FdhD
24	 66.60	0	22318..25197	-	959	119385581	-	Pden_2856	-	formate dehydrogenase, alpha subunit
25	 68.55	0	25194..26735	-	513	119385582	-	Pden_2857	-	NADH dehydrogenase (quinone)
26	 69.17	0	26732..27211	-	159	119385583	-	Pden_2858	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
27	 69.53	0	27287..28159	-	290	119385584	-	Pden_2859	-	LysR family transcriptional regulator
28	 66.25	0	28248..28487	-	79	119385585	-	Pden_2860	-	phosphoribosylformylglycinamidine synthase, purS
29	 62.09	-1	28499..29263	-	254	119385586	-	Pden_2861	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
30	 66.03	0	29411..29725	+	104	119385587	-	Pden_2862	-	hypothetical protein
31	 70.85	0	29772..31109	-	445	119385588	-	Pden_2863	-	MATE efflux family protein
32	 67.66	0	31102..31605	-	167	119385589	-	Pden_2864	-	thioesterase superfamily protein
33	 70.04	0	31607..32110	-	167	119385590	-	Pden_2865	-	hypothetical protein
34	 63.55	0	32188..32604	+	138	119385591	-	Pden_2866	-	MerR family transcriptional regulator
35	 65.69	0	32576..33085	+	169	119385592	-	Pden_2867	-	MerR family transcriptional regulator
36	 66.44	0	33110..34888	+	592	119385593	-	Pden_2868	-	acyl-CoA dehydrogenase domain-containing protein
37	 66.36	0	35165..35806	+	213	119385594	-	Pden_2869	-	glutathione S-transferase domain-containing protein
38	 67.41	0	35803..37014	+	403	119385595	-	Pden_2870	-	acetyl-CoA acetyltransferase
39	 66.90	0	37026..39209	+	727	119385596	-	Pden_2871	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
40	 68.85	0	39349..40356	-	335	119385597	-	Pden_2872	-	ribokinase-like domain-containing protein
41	 65.02	0	40353..41021	-	222	119385598	-	Pden_2873	-	endonuclease III
42	 71.69	+1	41122..41718	+	198	119385599	-	Pden_2874	-	methylated-DNA--protein-cysteine methyltransferase
43	 69.29	0	41880..42527	+	215	119385600	-	Pden_2875	-	OmpA/MotB domain-containing protein
44	 68.29	0	42697..43251	-	184	119385601	-	Pden_2876	-	F0F1 ATP synthase subunit B
45	 66.98	0	43248..43895	-	215	119385602	-	Pden_2877	-	F0F1 ATP synthase subunit B'
46	 67.09	0	43975..44208	-	77	119385603	-	Pden_2878	-	F0F1 ATP synthase subunit C
47	 62.38	-1	44268..45014	-	248	119385604	-	Pden_2879	-	F0F1 ATP synthase subunit A
48	 67.25	0	45017..45358	-	113	119385605	-	Pden_2880	-	hypothetical protein
49	 68.07	0	45545..45901	+	118	119385606	-	Pden_2881	-	regulatory protein, ArsR
50	 66.17	0	45967..47568	-	533	119385607	-	Pden_2882	-	5'-nucleotidase domain-containing protein
51	 70.13	0	47660..48034	+	124	119385608	-	Pden_2883	-	hypothetical protein
52	 72.24	+1	48031..49089	+	352	119385609	-	Pden_2884	-	dihydroorotate dehydrogenase 2
53	 67.50	0	49086..49925	-	279	119385610	-	Pden_2885	-	serine O-acetyltransferase
54	 71.78	+1	49990..50712	-	240	119385611	-	Pden_2886	-	hypothetical protein
55	 72.83	+1	50705..54595	-	1296	119385612	-	Pden_2887	-	putative phage host specificity protein
56	 72.30	+1	54614..55039	-	141	119385613	-	Pden_2888	-	NlpC/P60 family phage cell wall peptidase
57	 72.41	+1	55036..55854	-	272	119385614	-	Pden_2889	-	phage protein
58	 71.03	+1	55851..56492	-	213	119385615	-	Pden_2890	-	hypothetical protein
59	 73.21	+1	56485..57156	-	223	119385616	-	Pden_2891	-	phage-related minor tail protein-like
60	 77.00	+2	57181..57393	-	70	119385617	-	Pden_2892	-	hypothetical protein
61	 73.58	+1	57390..57707	-	105	119385618	-	Pden_2893	-	hypothetical protein
62	 66.91	0	57709..58122	-	137	119385619	-	Pden_2894	-	TP901-1 family phage major tail protein
63	 75.71	+2	58135..58554	-	139	119385620	-	Pden_2895	-	hypothetical protein
64	 76.07	+2	58551..58901	-	116	119385621	-	Pden_2896	-	head-tail adaptor, putative
65	 75.89	+2	58898..59515	-	205	119385622	-	Pden_2897	-	hypothetical protein
66	 68.81	0	59644..60810	-	388	119385623	-	Pden_2898	-	HK97 family phage major capsid protein
67	 71.68	+1	60834..61391	-	185	119385624	-	Pden_2899	-	HK97 family phage prohead protease
68	 65.38	0	61372..61605	-	77	119385625	-	Pden_2900	-	hypothetical protein
69	 71.32	+1	61607..62809	-	400	119385626	-	Pden_2901	-	HK97 family phage portal protein
70	 73.78	+1	62958..64349	-	463	119385627	-	Pden_2902	-	hypothetical protein
71	 69.97	0	64871..66049	-	392	119385628	-	Pden_2903	-	aminodeoxychorismate lyase
72	 67.85	0	66046..67308	-	420	119385629	-	Pden_2904	-	3-oxoacyl-(acyl carrier protein) synthase II
73	 70.82	0	67429..68199	-	256	119385630	-	Pden_2905	-	enoyl-CoA hydratase/isomerase
74	 68.97	0	68209..69336	-	375	119385631	-	Pden_2906	-	acyl-CoA dehydrogenase domain-containing protein
75	 71.49	+1	69333..70514	-	393	119385632	-	Pden_2907	-	acetyl-CoA acetyltransferases
76	 71.61	+1	70527..71294	-	255	119385633	-	Pden_2908	-	short-chain dehydrogenase/reductase SDR
77	 68.32	0	71302..72993	-	563	119385634	-	Pden_2909	-	AMP-dependent synthetase and ligase
78	 73.31	+1	73096..74118	+	340	119385635	-	Pden_2910	-	helix-turn-helix domain-containing protein
79	 74.70	+1	74075..75058	-	327	119385636	-	Pden_2911	-	hypothetical protein
80	 68.83	0	75215..76324	-	369	119385637	-	Pden_2912	-	replication protein, putative
81	 65.75	0	76321..77625	-	434	119385638	-	Pden_2913	-	cobyrinic acid a,c-diamide synthase
82	 67.41	0	78109..78783	+	224	119385639	-	Pden_2914	-	hypothetical protein
83	 64.73	0	78876..79133	+	85	119385640	-	Pden_2915	-	hypothetical protein
84	 66.77	0	79269..80231	+	320	119385641	-	Pden_2916	-	biotin synthase
85	 74.37	+1	80228..81343	+	371	119385642	-	Pden_2917	-	8-amino-7-oxononanoate synthase
86	 74.06	+1	81340..81948	+	202	119385643	bioD	Pden_2918	-	dithiobiotin synthetase
87	 71.18	+1	81948..83231	+	427	119385644	-	Pden_2919	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
88	 72.41	+1	83228..83836	+	202	119385645	-	Pden_2920	-	hypothetical protein
89	 75.13	+2	83833..84576	+	247	119385646	-	Pden_2921	-	methyltransferase type 11
90	 72.52	+1	84573..85238	-	221	119385647	-	Pden_2922	-	GntR family transcriptional regulator
91	 73.50	+1	85282..85866	-	194	119385648	-	Pden_2923	-	2',5' RNA ligase
92	 73.67	+1	85916..86572	-	218	119385649	-	Pden_2924	-	hypothetical protein
93	 70.55	0	86569..87984	-	471	119385650	-	Pden_2925	-	iron-sulfur cluster binding protein
94	 69.39	0	87981..88751	-	256	119385651	-	Pden_2926	-	hypothetical protein
95	 67.23	0	88761..90527	-	588	119385652	-	Pden_2927	-	L-lactate transport
96	 69.24	0	90605..92314	-	569	119385653	-	Pden_2928	-	D-lactate dehydrogenase
97	 70.41	0	92529..93302	+	257	119385654	-	Pden_2929	-	GntR domain-containing protein
98	 69.29	0	93367..93633	+	88	119385655	-	Pden_2930	-	hypothetical protein
99	 68.99	0	93763..95139	+	458	119385656	-	Pden_2931	-	gluconate transporter
100	 70.24	0	95148..95651	+	167	119385657	-	Pden_2932	-	carbohydrate kinase
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.