IslandPath Analysis: Streptococcus agalactiae A909



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.66   STD DEV: 3.56
Streptococcus agalactiae A909, complete genome - 1..2127839
1996 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.10	0	101..1462	+	453	76787564	dnaA	SAK_0001	-	chromosomal replication initiation protein
2	 33.07	0	1617..2753	+	378	76787013	dnaN	SAK_0002	-	DNA polymerase III subunit beta
3	 31.07	-1	2823..3704	+	293	76787923	-	SAK_0003	-	diacylglycerol kinase domain-containing protein
4	 33.84	0	3714..3911	+	65	76788139	-	SAK_0004	-	hypothetical protein
5	 29.06	-1	4113..4229	+	38	76787006	-	SAK_0005	-	hypothetical protein
6	 36.74	0	4473..5588	+	371	76788043	ychF	SAK_0006	-	translation-associated GTPase
7	 30.38	-1	5672..6247	+	191	76787164	pth	SAK_0007	-	peptidyl-tRNA hydrolase
8	 33.79	0	6244..9741	+	1165	76788164	mfd	SAK_0008	-	transcription-repair coupling factor
9	 35.90	0	10032..10304	+	90	76786971	-	SAK_0009	-	S4 domain-containing protein
10	 31.72	-1	10291..10662	+	123	76788554	-	SAK_0010	-	hypothetical protein
11	 30.37	-1	10665..10799	+	44	76786916	-	SAK_0011	-	hypothetical protein
12	 32.09	-1	10799..12085	+	428	76786907	-	SAK_0012	-	hypothetical protein
13	 31.69	-1	12087..13361	+	424	76788050	tilS	SAK_0013	-	tRNA(Ile)-lysidine synthetase
14	 32.23	0	13366..13908	+	180	76788478	hpt	SAK_0014	-	hypoxanthine-guanine phosphoribosyltransferase
15	 37.84	0	13931..15907	+	658	76787819	ftsH	SAK_0015	-	cell division protein FtsH
16	 40.32	+1	28898..30199	+	433	76788285	pcsB	SAK_0050	-	PcsB protein
17	 37.67	0	30323..31291	+	322	76787283	prs	SAK_0051	-	ribose-phosphate pyrophosphokinase
18	 35.20	0	31399..32574	+	391	76788282	-	SAK_0052	-	aromatic amino acid aminotransferase
19	 30.18	-1	32564..33325	+	253	76787396	recO	SAK_0053	-	DNA repair protein RecO
20	 30.05	-1	33415..34266	+	283	76787992	-	SAK_0054	-	CAAX amino terminal protease family protein
21	 37.26	0	34344..35336	+	330	76786784	plsX	SAK_0055	-	putative glycerol-3-phosphate acyltransferase PlsX
22	 35.42	0	35347..35586	+	79	76786855	-	SAK_0056	-	acyl carrier protein
23	 35.45	0	35710..36417	+	235	76788085	purC	SAK_0057	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
24	 45.54	+2	36685..40296	+	1203	76787165	-	SAK_0058	-	phosphoribosylformylglycinamidine synthase
25	 38.69	0	40530..41984	+	484	76788351	purF	SAK_0059	-	amidophosphoribosyltransferase
26	 43.89	+2	42012..43034	+	340	76787420	purM	SAK_0060	-	phosphoribosylaminoimidazole synthetase
27	 47.10	+2	43202..43753	+	183	76788568	purN	SAK_0061	-	phosphoribosylglycinamide formyltransferase
28	 35.59	0	43773..44525	+	250	76787699	-	SAK_0062	-	acetyltransferase
29	 47.61	+2	44545..46092	+	515	76787816	purH	SAK_0063	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
30	 40.89	+1	46285..47184	+	299	76786904	zooA	SAK_0064	-	zoocin A
31	 40.61	+1	47331..48635	+	434	76788047	sip	SAK_0065	-	group B streptococcal surface immunogenic protein
32	 38.91	0	48882..49580	+	232	76788614	-	SAK_0066	-	N-acetylmannosamine-6-phosphate 2-epimerase
33	 34.70	0	49627..50943	+	438	76787512	-	SAK_0067	-	carbohydrate ABC transporter periplasmic-binding protein
34	 34.57	0	51031..51918	+	295	76786863	-	SAK_0068	-	carbohydrate ABC transporter permease
35	 35.98	0	51928..52758	+	276	76787777	-	SAK_0069	-	carbohydrate ABC transporter permease
36	 31.53	-1	52771..53214	+	147	76787046	-	SAK_0070	-	hypothetical protein
37	 31.67	-1	53234..53896	+	220	76787835	-	SAK_0071	-	hypothetical protein
38	 35.29	0	53893..54810	+	305	76786846	-	SAK_0072	-	N-acetylneuraminate lyase, putative
39	 37.87	0	54827..55708	+	293	76788207	-	SAK_0073	-	ROK family protein
40	 35.28	0	55716..56693	+	325	76787295	-	SAK_0074	-	acetyl xylan esterase, putative
41	 35.95	0	56716..57519	-	267	76788393	-	SAK_0075	-	RpiR family phosphosugar-binding transcriptional regulator
42	 49.17	+2	57802..59064	+	420	76788387	purD	SAK_0076	-	phosphoribosylamine--glycine ligase
43	 48.88	+2	59350..59838	+	162	76786739	purE	SAK_0077	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
44	 49.45	+2	59825..60916	+	363	76787880	purK	SAK_0078	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
45	 24.35	-2	60969..62360	+	463	76786991	-	SAK_0079	-	hypothetical protein
46	 44.26	+2	62382..63680	+	432	76788126	purB	SAK_0080	-	adenylosuccinate lyase
47	 30.03	-1	63833..64741	+	302	76788347	-	SAK_0081	-	DNA-binding protein
48	 37.64	0	64942..65940	+	332	76787346	ruvB	SAK_0082	-	Holliday junction DNA helicase B
49	 38.58	0	66092..66529	+	145	76787627	-	SAK_0083	-	low molecular weight phosphotyrosine protein phosphatase
50	 34.12	0	66536..66916	+	126	76788486	-	SAK_0084	-	MORN repeat-containing protein
51	 34.46	0	66913..68691	+	592	76787884	-	SAK_0085	-	hypothetical protein
52	 39.05	0	68961..71603	+	880	76787506	-	SAK_0086	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
53	 42.87	+2	71782..72798	+	338	76786859	-	SAK_0087	-	alcohol dehydrogenase
54	 36.35	0	72918..74408	+	496	76787737	thrC	SAK_0088	-	threonine synthase
55	 36.22	0	74513..75793	+	426	76787136	-	SAK_0089	-	MATE efflux family protein
56	 40.45	+1	75998..76306	+	102	76788080	rpsJ	SAK_0090	-	30S ribosomal protein S10
57	 42.11	+1	76411..77037	+	208	76786764	rplC	SAK_0091	-	50S ribosomal protein L3
58	 42.95	+2	77061..77684	+	207	76787912	rplD	SAK_0092	-	50S ribosomal protein L4
59	 36.70	0	77684..77980	+	98	76787401	rplW	SAK_0093	-	50S ribosomal protein L23
60	 40.53	+1	77998..78831	+	277	76788180	rplB	SAK_0094	-	50S ribosomal protein L2
61	 39.78	+1	78930..79208	+	92	76787652	rpsS	SAK_0095	-	30S ribosomal protein S19
62	 39.42	+1	79224..79568	+	114	76787677	rplV	SAK_0096	-	50S ribosomal protein L22
63	 40.52	+1	79581..80234	+	217	76787747	rpsC	SAK_0097	-	30S ribosomal protein S3
64	 42.75	+1	80238..80651	+	137	76787110	rplP	SAK_0098	-	50S ribosomal protein L16
65	 34.78	0	80661..80867	+	68	76787939	rpmC	SAK_0099	-	50S ribosomal protein L29
66	 37.93	0	80893..81153	+	86	76788390	rpsQ	SAK_0100	-	30S ribosomal protein S17
67	 44.17	+2	81178..81546	+	122	76788220	rplN	SAK_0101	-	50S ribosomal protein L14
68	 39.22	0	81626..81931	+	101	76788646	rplX	SAK_0102	-	50S ribosomal protein L24
69	 38.86	0	81955..82497	+	180	76787491	rplE	SAK_0103	-	50S ribosomal protein L5
70	 43.55	+2	82515..82700	+	61	76787920	rpsN	SAK_0104	-	30S ribosomal protein S14
71	 35.34	0	82855..83253	+	132	76786843	rpsH	SAK_0105	-	30S ribosomal protein S8
72	 38.73	0	83363..83899	+	178	76788281	rplF	SAK_0106	-	50S ribosomal protein L6
73	 44.54	+2	84000..84356	+	118	76787371	rplR	SAK_0107	-	50S ribosomal protein L18
74	 43.64	+2	84375..84869	+	164	76786980	rpsE	SAK_0108	-	30S ribosomal protein S5
75	 38.33	0	84884..85063	+	59	76788098	rpmD	SAK_0109	-	50S ribosomal protein L30
76	 40.82	+1	85188..85628	+	146	76787679	rplO	SAK_0110	-	50S ribosomal protein L15
77	 34.71	0	85649..86953	+	434	76787809	secY	SAK_0111	-	preprotein translocase subunit SecY
78	 38.18	0	87048..87686	+	212	76787497	adk	SAK_0112	-	adenylate kinase
79	 37.44	0	87802..88020	+	72	76788620	infA	SAK_0113	-	translation initiation factor IF-1
80	 40.16	+1	88180..88545	+	121	76788115	rpsM	SAK_0114	-	30S ribosomal protein S13
81	 44.01	+2	88563..88946	+	127	161486743	rpsK	SAK_0115	-	30S ribosomal protein S11
82	 36.95	0	88996..89934	+	312	76787566	rpoA	SAK_0116	-	DNA-directed RNA polymerase subunit alpha
83	 39.79	+1	89949..90335	+	128	76788670	rplQ	SAK_0117	-	50S ribosomal protein L17
84	 31.02	-1	97532..97963	+	143	76787389	-	SAK_0137	-	putative lipoprotein
85	 33.33	0	98033..98203	+	56	76788453	-	SAK_0138	-	hypothetical protein
86	 30.62	-1	99119..99670	+	183	76787584	-	SAK_0139	-	hypothetical protein
87	 28.81	-1	99890..100309	+	139	76788699	-	SAK_0140	-	hypothetical protein
88	 30.00	-1	100509..100988	+	159	76786945	comX	SAK_0141	-	competence-specific sigma factor ComX
89	 39.25	+1	101110..101802	+	230	76787906	-	SAK_0142	-	phosphoglycerate mutase family protein
90	 35.99	0	101799..102551	+	250	76786972	-	SAK_0143	-	D-alanyl-D-alanine carboxypeptidase
91	 32.12	0	102548..103123	+	191	76788143	-	SAK_0144	-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase family protein
92	 37.58	0	103266..104300	+	344	76787247	hrcA	SAK_0145	-	heat-inducible transcription repressor
93	 41.76	+1	104342..104875	+	177	76788374	grpE	SAK_0146	-	co-chaperone protein GrpE
94	 39.89	+1	105056..106885	+	609	76787993	dnaK	SAK_0147	-	molecular chaperone DnaK
95	 41.22	+1	107174..108289	+	371	76787155	dnaJ	SAK_0148	-	co-chaperone protein DnaJ
96	 34.05	0	108403..109650	+	415	76787885	-	SAK_0149	-	GntR family transcriptional regulator
97	 36.42	0	109721..110497	+	258	76787537	truA	SAK_0150	-	tRNA pseudouridine synthase A
98	 36.36	0	110460..111218	+	252	76788690	-	SAK_0151	-	phosphomethylpyrimidine kinase
99	 36.99	0	111228..111692	+	154	76787611	-	SAK_0152	-	hypothetical protein
100	 38.60	0	111689..112258	+	189	76788470	-	SAK_0153	-	hypothetical protein
35.66	MEAN

3.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.