IslandPath Analysis: Bacillus cereus subsp. cytotoxis NVH 391-98



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.91   STD DEV: 3.35
Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome - 1..4087024
3833 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.27	0	521..1861	+	446	152973855	-	Bcer98_0001	-	chromosomal replication initiation protein
2	 32.37	-1	2043..3188	+	381	152973856	-	Bcer98_0002	-	DNA polymerase III subunit beta
3	 32.39	-1	3313..3525	+	70	152973857	-	Bcer98_0003	-	hypothetical protein
4	 33.24	0	3538..4659	+	373	152973858	-	Bcer98_0004	-	recombination protein F
5	 38.12	0	4698..6620	+	640	152973859	-	Bcer98_0005	-	DNA gyrase subunit B
6	 37.59	0	6711..9176	+	821	152973860	-	Bcer98_0006	-	DNA gyrase subunit A
7	 32.13	-1	14509..15504	-	331	152973861	-	Bcer98_0007	-	hypothetical protein
8	 38.32	0	15620..17083	+	487	152973862	-	Bcer98_0008	-	inositol-5-monophosphate dehydrogenase
9	 35.15	0	17190..18509	+	439	152973863	-	Bcer98_0009	-	Serine-type D-Ala-D-Ala carboxypeptidase
10	 42.57	+1	18669..19556	+	295	152973864	-	Bcer98_0010	-	pyridoxine biosynthesis protein
11	 39.09	0	19574..20164	+	196	152973865	-	Bcer98_0011	-	glutamine amidotransferase subunit PdxT
12	 37.73	0	20492..21766	+	424	152973866	-	Bcer98_0012	-	seryl-tRNA synthetase
13	 33.48	0	22591..23259	-	222	152973867	-	Bcer98_0014	-	deoxynucleoside kinase
14	 32.23	-1	23262..23897	-	211	152973868	-	Bcer98_0015	-	deoxynucleoside kinase
15	 31.36	-1	24001..24558	-	185	152973869	-	Bcer98_0016	-	isochorismatase hydrolase
16	 38.79	0	24674..25168	+	164	152973870	-	Bcer98_0017	-	CMP/dCMP deaminase zinc-binding
17	 38.37	0	25645..27333	+	562	152973871	-	Bcer98_0018	-	DNA polymerase III subunits gamma and tau
18	 37.27	0	27356..27685	+	109	152973872	-	Bcer98_0019	-	hypothetical protein
19	 39.20	0	27703..28299	+	198	152973873	-	Bcer98_0020	-	recombination protein RecR
20	 30.63	-1	28314..28535	+	73	152973874	-	Bcer98_0021	-	hypothetical protein
21	 33.65	0	28712..29029	+	105	152973875	-	Bcer98_0022	-	sigmaK-factor processing regulatory BofA
22	 26.11	-2	34513..34692	+	59	152973876	-	Bcer98_0023	-	CsfB protein, putative
23	 36.08	0	34766..36184	+	472	152973877	-	Bcer98_0024	-	Orn/Lys/Arg decarboxylase major region
24	 35.73	0	36193..36819	+	208	152973878	-	Bcer98_0025	-	thymidylate kinase
25	 36.69	0	36855..37838	+	327	152973879	-	Bcer98_0026	-	DNA polymerase III subunit delta'
26	 35.99	0	37844..38671	+	275	152973880	-	Bcer98_0027	-	PSP1 domain-containing protein
27	 33.05	0	38686..39036	+	116	152973881	-	Bcer98_0028	-	DNA replication intiation control protein YabA
28	 34.41	0	39166..39906	+	246	152973882	-	Bcer98_0029	-	hypothetical protein
29	 34.36	0	39893..40183	+	96	152973883	-	Bcer98_0030	-	GIY-YIG nuclease superfamily protein
30	 36.07	0	40152..41027	+	291	152973884	-	Bcer98_0031	-	uroporphyrin-III C/tetrapyrrole methyltransferase
31	 35.44	0	41048..41332	-	94	152973885	-	Bcer98_0032	-	AbrB family transcriptional regulator
32	 34.90	0	41718..43697	+	659	152973886	-	Bcer98_0033	-	methionyl-tRNA synthetase
33	 36.72	0	43857..44624	+	255	152973887	-	Bcer98_0034	-	TatD family hydrolase
34	 38.17	0	44779..45336	+	185	152973888	-	Bcer98_0035	-	primase/topoisomerase like protein
35	 35.72	0	45333..46211	+	292	152973889	-	Bcer98_0036	-	dimethyladenosine transferase
36	 37.27	0	46418..47281	+	287	152973890	-	Bcer98_0037	-	peptidase U57 YabG
37	 35.90	0	47654..47965	+	103	152973891	-	Bcer98_0038	-	hypothetical protein
38	 40.00	+1	48058..48237	+	59	152973892	-	Bcer98_0039	-	small, acid-soluble spore protein
39	 41.61	+1	48433..49302	+	289	152973893	-	Bcer98_0040	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
40	 37.10	0	49357..50205	+	282	152973894	-	Bcer98_0041	-	purine operon repressor
41	 35.20	0	50384..50758	+	124	152973895	-	Bcer98_0042	-	putative endoribonuclease L-PSP
42	 41.16	+1	50911..51204	+	97	152973896	-	Bcer98_0043	-	regulatory protein SpoVG
43	 38.33	0	51518..52897	+	459	152973897	-	Bcer98_0044	-	UDP-N-acetylglucosamine pyrophosphorylase
44	 36.48	0	52916..53869	+	317	152973898	-	Bcer98_0045	-	ribose-phosphate pyrophosphokinase
45	 36.54	0	53942..54502	+	186	152973899	-	Bcer98_0046	-	peptidyl-tRNA hydrolase
46	 32.00	-1	54573..54797	+	74	152973900	-	Bcer98_0047	-	hypothetical protein
47	 35.63	0	54903..58433	+	1176	152973901	-	Bcer98_0048	-	transcription-repair coupling factor
48	 35.75	0	58569..59105	+	178	152973902	-	Bcer98_0049	-	AbrB family transcriptional regulator
49	 35.66	0	59346..60935	+	529	152973903	-	Bcer98_0050	-	polysaccharide biosynthesis protein
50	 37.02	0	60947..62410	+	487	152973904	-	Bcer98_0051	-	MazG family protein
51	 32.25	-1	62422..62697	+	91	152973905	-	Bcer98_0052	-	RNA-binding S4 domain-containing protein
52	 32.69	0	62757..63065	+	102	152973906	-	Bcer98_0053	-	YabP family protein
53	 34.77	0	63089..63715	+	208	152973907	-	Bcer98_0054	-	spore cortex biosynthesis protein YabQ
54	 31.39	-1	63712..64071	+	119	152973908	-	Bcer98_0055	-	septum formation initiator
55	 39.87	+1	64159..64617	+	152	152973909	-	Bcer98_0056	-	hypothetical protein
56	 36.23	0	65220..67667	+	815	152973910	-	Bcer98_0057	-	sporulation stage II protein E
57	 35.78	0	67860..69290	+	476	152973911	-	Bcer98_0058	-	tRNA(Ile)-lysidine synthetase
58	 34.25	0	69287..69829	+	180	152973912	-	Bcer98_0059	-	hypoxanthine-guanine phosphoribosyltransferase
59	 39.74	+1	69915..71834	+	639	152973913	-	Bcer98_0060	-	ATP-dependent metalloprotease FtsH
60	 36.50	0	72044..72832	+	262	152973914	-	Bcer98_0061	-	pantothenate kinase
61	 38.81	0	72836..73711	+	291	152973915	-	Bcer98_0062	-	Hsp33-like chaperonin
62	 40.37	+1	73830..74753	+	307	152973916	-	Bcer98_0063	-	cysteine synthase A
63	 37.91	0	74965..76362	+	465	152973917	-	Bcer98_0064	-	para-aminobenzoate synthase component I
64	 35.88	0	76368..76955	+	195	152973918	-	Bcer98_0065	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
65	 34.27	0	76949..77806	+	285	152973919	-	Bcer98_0066	-	4-amino-4-deoxychorismate lyase
66	 38.37	0	77823..78656	+	277	152973920	-	Bcer98_0067	-	dihydropteroate synthase
67	 35.54	0	78657..79019	+	120	152973921	-	Bcer98_0068	-	dihydroneopterin aldolase
68	 35.27	0	79016..79531	+	171	152973922	-	Bcer98_0069	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
69	 35.85	0	79528..79686	+	52	152973923	-	Bcer98_0070	-	XRE family transcriptional regulator
70	 40.54	+1	79710..80708	+	332	152973924	-	Bcer98_0071	-	nifR3 family TIM-barrel protein
71	 36.53	0	80869..82368	+	499	152973925	-	Bcer98_0072	-	lysyl-tRNA synthetase
72	 33.98	0	93696..94157	+	153	152973926	-	Bcer98_0073	-	transcriptional repressor, CtsR
73	 36.43	0	94313..94861	+	182	152973927	-	Bcer98_0074	-	UvrB/UvrC protein
74	 36.88	0	94866..95936	+	356	152973928	-	Bcer98_0075	-	ATP:guanido phosphotransferase
75	 39.08	0	95952..98387	+	811	152973929	-	Bcer98_0076	-	ATPase
76	 39.58	+1	98475..99851	+	458	152973930	-	Bcer98_0077	-	DNA repair protein RadA
77	 36.50	0	99855..100928	+	357	152973931	-	Bcer98_0078	-	DNA integrity scanning protein DisA
78	 35.94	0	101090..102202	+	370	152973932	-	Bcer98_0079	-	PilT domain-containing protein
79	 38.62	0	102219..102899	+	226	152973933	-	Bcer98_0080	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
80	 37.74	0	103009..103485	+	158	152973934	-	Bcer98_0081	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
81	 37.52	0	103575..105032	+	485	152973935	-	Bcer98_0082	-	glutamyl-tRNA synthetase
82	 37.09	0	105538..106203	+	221	152973936	-	Bcer98_0083	-	serine O-acetyltransferase
83	 35.26	0	106184..107581	+	465	152973937	-	Bcer98_0084	-	cysteinyl-tRNA synthetase
84	 38.97	0	107584..107991	+	135	152973938	-	Bcer98_0085	-	hypothetical protein
85	 39.52	+1	107988..108731	+	247	152973939	-	Bcer98_0086	-	RNA methyltransferase
86	 38.79	0	108735..109247	+	170	152973940	-	Bcer98_0087	-	hypothetical protein
87	 33.03	0	109315..109977	+	220	152973941	-	Bcer98_0088	-	RNA polymerase factor sigma-70
88	 35.00	0	110272..110451	+	59	152973942	-	Bcer98_0089	-	preprotein translocase subunit SecE
89	 35.96	0	110572..111105	+	177	152973943	-	Bcer98_0090	-	transcription antitermination protein NusG
90	 43.43	+2	111275..111700	+	141	152973944	-	Bcer98_0091	-	50S ribosomal protein L11
91	 39.39	+1	111883..112575	+	230	152973945	-	Bcer98_0092	-	50S ribosomal protein L1
92	 40.32	+1	112808..113308	+	166	152973946	-	Bcer98_0093	-	50S ribosomal protein L10
93	 38.61	0	113376..113735	+	119	152973947	-	Bcer98_0094	-	50S ribosomal protein L7/L12
94	 40.00	+1	113811..114410	+	199	152973948	-	Bcer98_0095	-	methyltransferase small
95	 40.66	+1	118271..121885	+	1204	152973949	-	Bcer98_0097	-	DNA-directed RNA polymerase subunit beta'
96	 39.36	+1	121999..122247	+	82	152973950	-	Bcer98_0098	-	hypothetical protein
97	 39.95	+1	122362..122784	+	140	152973951	-	Bcer98_0099	-	30S ribosomal protein S12
98	 41.83	+1	122814..123284	+	156	152973952	-	Bcer98_0100	-	30S ribosomal protein S7
99	 42.14	+1	123494..125572	+	692	152973953	-	Bcer98_0101	-	elongation factor G
100	 44.19	+2	125691..126878	+	395	152973954	-	Bcer98_0102	-	elongation factor Tu
35.91	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.