IslandPath Analysis: Dinoroseobacter shibae DFL 12



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.00   STD DEV: 4.10
Dinoroseobacter shibae DFL 12, complete genome - 1..3789584
3577 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.08	0	128..1567	+	479	159042557	-	Dshi_0001	-	putative oxidoreductase
2	 66.42	0	1782..6320	+	1512	159042558	-	Dshi_0002	-	glutamate synthase (ferredoxin)
3	 48.69	-2	6407..7018	+	203	159042559	-	Dshi_0003	-	hypothetical protein
4	 65.97	0	7257..8114	-	285	159042560	-	Dshi_0004	-	hypothetical protein
5	 74.33	+2	8220..8924	+	234	159042561	-	Dshi_0005	-	hypothetical protein
6	 67.63	0	9028..9855	+	275	159042562	-	Dshi_0006	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
7	 48.29	-2	10226..10693	+	155	159042563	-	Dshi_0007	-	hypothetical protein
8	 51.48	-2	10683..11255	+	190	159042564	-	Dshi_0008	-	hypothetical protein
9	 61.84	-1	11747..11953	-	68	159042565	-	Dshi_0009	-	cold-shock DNA-binding domain-containing protein
10	 66.09	0	12121..12642	-	173	159042566	-	Dshi_0010	-	hypothetical protein
11	 67.24	0	12777..13124	+	115	159042567	-	Dshi_0011	-	hypothetical protein
12	 69.21	0	13129..14268	+	379	159042568	-	Dshi_0012	-	succinyl-diaminopimelate desuccinylase
13	 72.49	+1	14265..14693	+	142	159042569	-	Dshi_0013	-	GCN5-related N-acetyltransferase
14	 73.92	+1	14693..15271	+	192	159042570	-	Dshi_0014	-	hypothetical protein
15	 69.95	0	15472..17727	+	751	159042571	-	Dshi_0015	-	ribonuclease R
16	 71.15	+1	18179..19426	+	415	159042572	-	Dshi_0016	-	lytic murein transglycosylase
17	 71.12	+1	19516..20166	-	216	159042573	-	Dshi_0017	-	hypothetical protein
18	 69.01	0	20326..22629	-	767	159042574	-	Dshi_0018	-	multicopper oxidase type 2
19	 66.39	0	22866..24683	+	605	159042575	-	Dshi_0019	-	GTP-binding protein TypA
20	 65.01	0	25297..26019	-	240	159042576	-	Dshi_0020	-	putative transcriptional regulator, CadC
21	 68.64	0	25973..26377	-	134	159042577	-	Dshi_0021	-	hypothetical protein
22	 73.69	+1	26400..26954	+	184	159042578	-	Dshi_0022	-	hypothetical protein
23	 67.95	0	26998..27618	+	206	159042579	-	Dshi_0023	-	ribonuclease H
24	 65.40	0	27713..28819	+	368	159042580	-	Dshi_0024	-	DNA methylase N-4/N-6 domain-containing protein
25	 68.01	0	29143..29814	+	223	159042581	-	Dshi_0025	-	anti-ECFsigma factor, ChrR
26	 66.20	0	29888..30529	+	213	159042582	-	Dshi_0026	-	NAD-dependent epimerase/dehydratase
27	 68.83	0	30653..31807	-	384	159042583	-	Dshi_0027	-	alkane 1-monooxygenase
28	 72.33	+1	31815..32909	-	364	159042584	-	Dshi_0028	-	A/G-specific adenine glycosylase
29	 69.01	0	32995..33507	+	170	159042585	-	Dshi_0029	-	hypothetical protein
30	 63.84	0	33519..34190	+	223	159042586	-	Dshi_0030	-	thiol-disulfide oxidoreductase D, putative
31	 74.95	+2	34226..35239	-	337	159042587	-	Dshi_0031	-	tetraacyldisaccharide 4'-kinase
32	 71.68	+1	35239..36555	-	438	159042588	-	Dshi_0032	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
33	 68.23	0	36716..36907	-	63	159042589	-	Dshi_0033	-	hypothetical protein
34	 66.20	0	36904..37551	-	215	159042590	-	Dshi_0034	-	peptidase S16 lon domain-containing protein
35	 69.85	0	37578..38489	-	303	159042591	-	Dshi_0035	-	thioredoxin domain-containing protein
36	 68.82	0	38563..39351	-	262	159042592	-	Dshi_0036	-	exodeoxyribonuclease III Xth
37	 60.95	-1	39692..40216	+	174	159042593	-	Dshi_0037	-	cell wall anchor domain-containing protein
38	 63.61	0	40432..41118	-	228	159042594	-	Dshi_0038	-	two component transcriptional regulator
39	 70.12	+1	41277..42347	+	356	159042595	-	Dshi_0039	-	GTP cyclohydrolase II
40	 68.75	0	42375..42662	+	95	159042596	-	Dshi_0040	-	hypothetical protein
41	 73.13	+1	42669..43163	+	164	159042597	-	Dshi_0041	-	hypothetical protein
42	 68.49	0	43160..43816	-	218	159042598	-	Dshi_0042	-	alanine racemase domain-containing protein
43	 61.67	-1	43903..44862	-	319	159042599	-	Dshi_0043	-	hypothetical protein
44	 67.52	0	45163..45633	+	156	159042600	-	Dshi_0044	-	hypothetical protein
45	 65.07	0	45640..46014	-	124	159042601	-	Dshi_0045	-	UspA domain-containing protein
46	 58.72	-1	46315..46704	+	129	159042602	-	Dshi_0046	-	hypothetical protein
47	 46.81	-2	46984..47406	-	140	159042603	-	Dshi_0047	-	hypothetical protein
48	 61.06	-1	47483..48445	-	320	159042604	-	Dshi_0048	-	putative transposase
49	 51.21	-2	48547..48753	+	68	159042605	-	Dshi_0049	-	hypothetical protein
50	 52.59	-2	48750..49232	-	160	159042606	-	Dshi_0050	-	hypothetical protein
51	 52.52	-2	49229..49645	-	138	159042607	-	Dshi_0051	-	hypothetical protein
52	 65.73	0	49656..49868	-	70	159042608	-	Dshi_0052	-	hypothetical protein
53	 75.84	+2	49943..51163	+	406	159042609	-	Dshi_0053	-	hypothetical protein
54	 71.07	+1	51142..51732	-	196	159042610	-	Dshi_0054	-	glutathione S-transferase domain-containing protein
55	 72.61	+1	51747..52772	-	341	159042611	-	Dshi_0055	-	DNA polymerase III, delta
56	 69.09	0	52769..53263	-	164	159042612	-	Dshi_0056	-	hypothetical protein
57	 67.51	0	53250..55859	-	869	159042613	-	Dshi_0057	-	leucyl-tRNA synthetase
58	 69.22	0	55941..56645	-	234	159042614	-	Dshi_0058	-	outer membrane lipoprotein carrier protein LolA
59	 68.98	0	56686..59673	-	995	159042615	-	Dshi_0059	-	cell divisionFtsK/SpoIIIE
60	 69.20	0	59687..60868	-	393	159042616	-	Dshi_0060	-	aminotransferase class I and II
61	 72.22	+1	60992..62323	-	443	159042617	-	Dshi_0061	-	amidase
62	 70.38	+1	62385..63650	+	421	159042618	-	Dshi_0062	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
63	 70.82	+1	63773..64567	-	264	159042619	-	Dshi_0063	-	inositol-phosphate phosphatase
64	 71.57	+1	64554..65900	-	448	159042620	-	Dshi_0064	-	peptidase U62 modulator of DNA gyrase
65	 70.62	+1	65978..67468	-	496	159042621	-	Dshi_0065	-	hypothetical protein
66	 67.59	0	67584..68342	+	252	159042622	-	Dshi_0066	-	short-chain dehydrogenase/reductase SDR
67	 72.02	+1	68339..69085	+	248	159042623	-	Dshi_0067	-	enoyl-CoA hydratase/isomerase
68	 64.27	0	69090..69674	-	194	159042624	-	Dshi_0068	-	putative lipoprotein
69	 65.31	0	69751..70632	-	293	159042625	-	Dshi_0069	-	auxin efflux carrier
70	 58.41	-1	70719..71045	+	108	159042626	-	Dshi_0070	-	hemimethylated DNA binding protein
71	 70.14	+1	71093..72676	-	527	159042627	-	Dshi_0071	-	gamma-glutamyltransferase
72	 63.14	0	72738..73247	-	169	159042628	-	Dshi_0072	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
73	 59.46	-1	73262..73594	-	110	159042629	-	Dshi_0073	-	anti-sigma-factor antagonist
74	 69.55	0	73694..74872	+	392	159042630	-	Dshi_0074	-	acetyl-CoA acetyltransferase
75	 62.14	0	75136..75378	-	80	159042631	-	Dshi_0075	-	hypothetical protein
76	 59.92	-1	75771..76007	+	78	159042632	-	Dshi_0076	-	hypothetical protein
77	 68.35	0	76020..76910	+	296	159042633	-	Dshi_0077	-	hypothetical protein
78	 69.06	0	76953..77537	+	194	159042634	-	Dshi_0078	-	hypothetical protein
79	 67.80	0	78091..78972	+	293	159042635	-	Dshi_0079	-	lipid A biosynthesis acyltransferase
80	 67.98	0	78969..79955	-	328	159042636	-	Dshi_0080	-	hypothetical protein
81	 66.76	0	80080..81186	-	368	159042637	-	Dshi_0081	-	3-isopropylmalate dehydrogenase
82	 71.38	+1	81262..82386	-	374	159042638	-	Dshi_0082	-	hypothetical protein
83	 61.88	-1	82492..83097	-	201	159042639	-	Dshi_0083	-	isopropylmalate isomerase small subunit
84	 63.45	0	83135..83662	-	175	159042640	-	Dshi_0084	-	hypothetical protein
85	 65.95	0	83697..85100	-	467	159042641	-	Dshi_0085	-	isopropylmalate isomerase large subunit
86	 61.53	-1	85412..86014	+	200	159042642	-	Dshi_0086	-	SOUL heme-binding protein
87	 62.16	0	86213..86545	+	110	159042643	-	Dshi_0087	-	iojap-like protein
88	 68.79	0	86564..87034	+	156	159042644	-	Dshi_0088	-	hypothetical protein
89	 66.01	0	87158..88675	+	505	159042645	-	Dshi_0089	-	phosphoglyceromutase
90	 71.47	+1	88672..89775	+	367	159042646	-	Dshi_0090	-	peptidase M23B
91	 64.57	0	89783..91120	+	445	159042647	-	Dshi_0091	-	carboxyl-terminal protease
92	 62.73	0	91122..91604	+	160	159042648	-	Dshi_0092	-	NUDIX hydrolase
93	 59.89	-1	91896..92264	-	122	159042649	-	Dshi_0093	-	hypothetical protein
94	 68.17	0	92411..93343	-	310	159042650	-	Dshi_0094	-	hypothetical protein
95	 61.78	-1	93348..94247	-	299	159042651	-	Dshi_0095	-	hypothetical protein
96	 66.67	0	94244..94774	-	176	159042652	-	Dshi_0096	-	hypothetical protein
97	 64.98	0	95154..95567	-	137	159042653	-	Dshi_0097	-	hypothetical protein
98	 64.04	0	95564..96019	-	151	159042654	-	Dshi_0098	-	hypothetical protein
99	 62.13	0	96161..96931	-	256	159042655	-	Dshi_0099	-	hypothetical protein
100	 63.48	0	96999..98882	-	627	159042656	-	Dshi_0100	-	transposase, putative
66.00	MEAN

4.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.