IslandPath Analysis: Thermoanaerobacter tengcongensis MB4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.40   STD DEV: 4.04
Thermoanaerobacter tengcongensis MB4, complete genome - 1..2689445
2588 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.34	0	365..1696	+	443	20806543	dnaA	TTE0001	-	chromosomal replication initiation protein
2	 37.74	0	1934..3046	+	370	20806544	DnaN	TTE0002	-	DNA polymerase III subunit beta
3	 33.82	0	3060..3266	+	68	20806545	-	TTE0003	-	hypothetical protein
4	 33.88	0	3277..4371	+	364	20806546	RecF	TTE0004	-	recombinational DNA repair ATPase
5	 32.56	-1	4384..4641	+	85	20806547	-	TTE0005	-	hypothetical protein
6	 36.75	0	4653..6908	+	751	20806548	-	TTE0006	-	alpha-glucosidase
7	 33.61	0	7199..7927	-	242	20806549	-	TTE0007	-	glutamine amidotransferase
8	 35.18	0	7924..9276	-	450	20806550	MurE	TTE0008	-	UDP-N-acetylmuramyl tripeptide synthase
9	 36.67	0	9290..9619	-	109	20806551	Arc1	TTE0009	-	EMAP domain-containing protein
10	 39.44	0	9726..11690	+	654	20806552	gyrB	TTE0010	-	DNA gyrase subunit B
11	 38.08	0	11704..14127	+	807	20806553	GyrA	TTE0011	-	DNA gyrase (topoisomerase II) A subunit
12	 35.90	0	14153..15166	-	337	20806554	NemA	TTE0012	-	NADH:flavin oxidoreductase
13	 36.21	0	15687..16970	-	427	20806555	-	TTE0013	-	transposase
14	 38.49	0	17655..18158	+	167	20806556	IlvH	TTE0014	-	acetolactate synthase small subunit
15	 42.17	+1	18160..19155	+	331	20806557	IlvC	TTE0015	-	ketol-acid reductoisomerase
16	 41.12	0	19174..20367	+	397	20806558	LeuA	TTE0016	-	isopropylmalate/homocitrate/citramalate synthase
17	 42.48	+1	20358..21614	+	418	20806559	LeuC	TTE0017	-	3-isopropylmalate dehydratase large subunit
18	 38.27	0	21614..22099	+	161	20806560	leuD	TTE0018	-	3-isopropylmalate dehydratase small subunit
19	 43.54	+1	22099..23166	+	355	20806561	LeuB	TTE0019	-	isocitrate/isopropylmalate dehydrogenase
20	 44.70	+1	23171..24841	+	556	20806562	IlvD	TTE0020	-	dihydroxy-acid dehydratase
21	 40.93	0	24838..26496	+	552	20806563	IlvB	TTE0021	-	acetolactate synthase large subunit
22	 32.86	-1	26524..27588	-	354	20806564	PerM	TTE0022	-	permease
23	 36.91	0	27991..28521	+	176	20806565	LepB	TTE0024	-	Signal peptidase I
24	 41.71	+1	28805..30082	+	425	20806566	SerS	TTE0025	-	seryl-tRNA synthetase
25	 35.72	0	30406..31620	-	404	20806567	LytR	TTE0026	-	transcriptional regulator
26	 41.08	0	31806..33173	+	455	20806568	-	TTE0027	-	transposase
27	 35.59	0	36694..39306	+	870	20806569	MgtA4	TTE0030	-	cation transport ATPase
28	 36.28	0	39394..40038	+	214	20806570	-	TTE0032	-	hypothetical protein
29	 38.75	0	40025..41722	-	565	20806571	-	TTE0034	-	hypothetical protein
30	 34.62	0	41889..43292	+	467	20806572	-	TTE0033	-	hypothetical protein
31	 35.99	0	43454..44167	+	237	20806573	-	TTE0035	-	hypothetical protein
32	 36.21	0	44184..45506	+	440	20806574	-	TTE0036	-	transglutaminase-like enzyme, putative cysteine protease
33	 40.94	0	45574..46020	+	148	20806575	-	TTE0037	-	cytosine/adenosine deaminase
34	 37.23	0	46670..48568	+	632	20806576	-	TTE0038	-	response regulator
35	 37.96	0	48666..50222	+	518	20806577	DnaX	TTE0039	-	DNA polymerase III, gamma/tau subunits
36	 38.69	0	50283..50618	+	111	20806578	-	TTE0040	-	hypothetical protein
37	 39.00	0	50628..51227	+	199	20806579	RecR	TTE0041	-	recombinational DNA repair protein
38	 35.55	0	51371..52543	+	390	20806580	-	TTE0042	-	HD-GYP domain-containing protein
39	 32.97	-1	52594..52866	+	90	20806581	-	TTE0043	-	hypothetical protein
40	 31.03	-1	52979..53326	-	115	20806582	-	TTE0045	-	hypothetical protein
41	 35.19	0	53380..53541	+	53	20806583	-	TTE0046	-	hypothetical protein
42	 38.35	0	58999..59736	+	245	20806584	FabG	TTE0051	-	dehydrogenase
43	 35.27	0	59729..60451	-	240	20806585	RsuA	TTE0052	-	16S rRNA uridine-516 pseudouridylate synthase family protein
44	 35.51	0	60661..61719	+	352	20806586	PurR	TTE0053	-	transcriptional regulator
45	 40.46	0	61756..63606	+	616	20806587	OppA	TTE0054	-	ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components
46	 37.18	0	63630..64616	+	328	20806588	DppB	TTE0055	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
47	 35.26	0	64613..65494	+	293	20806589	DppC	TTE0056	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
48	 38.43	0	65495..66475	+	326	20806590	DppD	TTE0057	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
49	 38.53	0	66472..67452	+	326	20806591	OppF	TTE0058	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
50	 31.03	-1	67465..67638	+	57	20806592	-	TTE0059	-	hypothetical protein
51	 36.78	0	67652..69565	+	637	20806593	-	TTE0061	-	hypothetical protein
52	 42.02	+1	69569..70477	+	302	20806594	-	TTE0062	-	glycosylase
53	 39.85	0	70493..71413	+	306	20806595	-	TTE0063	-	glycosylase
54	 38.43	0	71511..72374	+	287	20806596	FocA	TTE0064	-	formate/nitrate transporter
55	 41.33	0	72589..73638	+	349	20806597	Gcd1	TTE0065	-	nucleoside-diphosphate-sugar pyrophosphorylase
56	 38.11	0	73663..74835	+	390	20806598	RfaG	TTE0066	-	glycosyltransferase
57	 37.52	0	74850..75899	+	349	20806599	-	TTE0067	-	hypothetical protein
58	 37.44	0	75957..76955	+	332	20806600	DdlA	TTE0068	-	D-alanine-D-alanine ligase and related ATP-grasp enzyme
59	 40.76	0	77044..77811	+	255	20806601	fabG	TTE0069	-	3-ketoacyl-(acyl-carrier-protein) reductase
60	 35.59	0	77827..78402	+	191	20806602	AcrR	TTE0070	-	transcriptional regulator
61	 33.96	0	78650..80086	+	478	20806603	-	TTE0071	-	hypothetical protein
62	 36.04	0	80237..80458	+	73	20806604	-	TTE0072	-	hypothetical protein
63	 42.60	+1	80515..81420	-	301	20806605	MesJ	TTE0073	-	ATPase
64	 36.90	0	81346..81513	+	55	20806606	-	TTE0074	-	hypothetical protein
65	 39.26	0	81579..82421	+	280	20806607	TtdA	TTE0075	-	fumarate hydratase
66	 37.14	0	82441..82992	+	183	20806608	FumA	TTE0076	-	tartrate dehydratase subunit beta
67	 38.32	0	82998..83558	+	186	20806609	-	TTE0077	-	Uracil-DNA glycosylase
68	 33.79	0	88583..88801	-	72	20806610	SirA	TTE0081	-	transcriptional regulator
69	 33.33	-1	88813..89706	-	297	20806611	LysR	TTE0082	-	transcriptional regulator
70	 40.33	0	89887..90129	+	80	20806612	SirA2	TTE0083	-	transcriptional regulator
71	 39.43	0	90150..91166	+	338	20806613	-	TTE0084	-	transporter components
72	 38.42	0	91220..91573	+	117	20806614	DsrE	TTE0085	-	uncharacterized ACR involved in intracellular sulfur reduction
73	 39.17	0	91586..91945	+	119	20806615	-	TTE0086	-	hypothetical protein
74	 36.20	0	91957..92235	+	92	20806616	DsrH	TTE0087	-	uncharacterized ACR involved in oxidation of intracellular sulfur
75	 38.38	0	92266..93651	+	461	20806617	Lpd	TTE0088	-	dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzyme
76	 39.68	0	93677..94054	+	125	20806618	GcvH	TTE0089	-	glycine cleavage system H protein (lipoate-binding)
77	 42.30	+1	94148..95095	+	315	20806619	NagC	TTE0090	-	transcriptional regulator
78	 36.33	0	95100..95666	+	188	20806620	Tag	TTE0091	-	3-methyladenine DNA glycosylase
79	 36.00	0	95720..95944	+	74	20806621	-	TTE0092	-	sigma-F transcribed protein csfB
80	 37.84	0	96004..97422	+	472	20806622	LdcC	TTE0093	-	arginine/lysine/ornithine decarboxylase
81	 41.79	+1	97419..98045	+	208	20806623	Tmk	TTE0094	-	thymidylate kinase
82	 41.21	0	98042..98371	+	109	20806624	-	TTE0095	-	hypothetical protein
83	 32.22	-1	98377..98826	+	149	20806625	-	TTE0096	-	hypothetical protein
84	 33.33	-1	98846..99808	+	320	20806626	HolB	TTE0097	-	ATPase involved in DNA replication
85	 38.89	0	99811..100692	+	293	20806627	-	TTE0098	-	hypothetical protein
86	 34.62	0	100706..101095	-	129	20806628	-	TTE0099	-	hypothetical protein
87	 40.29	0	101099..101932	-	277	20806629	-	TTE0100	-	permease
88	 37.60	0	102016..104196	-	726	20806630	-	TTE0101	-	hypothetical protein
89	 37.81	0	104297..105703	-	468	20806631	ArcA	TTE0103	-	arginine deiminase
90	 38.62	0	105642..106397	+	251	20806632	SmtA	TTE0102	-	SAM-dependent methyltransferase
91	 38.29	0	106400..107227	+	275	20806633	-	TTE0104	-	methyltransferase
92	 36.45	0	107332..108198	+	288	20806634	Mmt1	TTE0105	-	Co/Zn/Cd cation transporter
93	 40.00	0	108233..108487	-	84	20806635	-	TTE0106	-	transcription regulator AbrB
94	 41.20	0	108667..109251	+	194	20806636	SpmA	TTE0107	-	hypothetical protein
95	 39.55	0	109248..109778	+	176	20806637	SpmB	TTE0108	-	hypothetical protein
96	 37.76	0	109853..111253	+	466	20806638	PcnB	TTE0109	-	tRNA nucleotidyltransferase/poly(A) polymerase
97	 39.18	0	111613..113529	+	638	20806639	MetG	TTE0110	-	methionyl-tRNA synthetase
98	 36.84	0	113540..114310	+	256	20806640	TatD	TTE0111	-	Mg-dependent DNase
99	 42.87	+1	114449..115465	+	338	20806641	-	TTE0112	-	hypothetical protein
100	 36.43	0	115504..116310	+	268	20806642	KsgA	TTE0113	-	dimethyladenosine transferase (rRNA methylation)
37.40	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.