IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.23   STD DEV: 3.92
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3282708
3057 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.10	0	1..1575	+	524	62388893	dnaA	cg0001	-	chromosomal replication initiation protein
2	 41.90	-2	1594..1920	-	108	62388894	-	cg0002	-	hypothetical protein
3	 56.88	0	2292..3476	+	394	62388895	dnaN	cg0004	-	DNA polymerase III subunit beta
4	 55.70	0	3585..4769	+	394	62388896	recF	cg0005	-	recombination protein F
5	 55.12	0	4766..5302	+	178	161486724	-	cg0006	-	hypothetical protein
6	 55.91	0	5435..7489	+	684	62388898	gyrB	cg0007	-	DNA gyrase subunit B
7	 51.08	0	7830..8798	+	322	62388899	-	cg0008	-	hypothetical protein
8	 48.96	-1	8795..9466	-	223	62388900	-	cg0009	-	hypothetical protein
9	 55.18	0	9471..9914	-	147	62388901	-	cg0010	-	hypothetical protein
10	 58.66	+1	10104..11177	-	357	62388902	-	cg0012	-	putative transcription regulator protein
11	 54.55	0	11260..11523	-	87	62388903	-	cg0013	-	TetR family regulatory protein
12	 59.04	+1	11520..11768	-	82	62388904	-	cg0014	-	CopG family protein
13	 59.43	+1	11831..14401	+	856	62388905	gyrA	cg0015	-	DNA gyrase subunit A
14	 51.88	0	14405..14749	+	114	62388906	-	cg0016	-	putative integral membrane protein
15	 51.93	0	15206..16243	-	345	62388907	-	cg0018	-	hypothetical protein
16	 52.06	0	16314..17210	+	298	62388908	-	cg0019	-	transcription regulator LysR
17	 48.94	-1	17251..17673	+	140	62388909	-	cg0021	-	hypothetical protein
18	 52.92	0	17857..18729	-	290	62388910	-	cg0025	-	putative integral membrane cytochrome biogenesis protein
19	 54.48	0	18733..19479	-	248	62388911	-	cg0026	-	HCCA isomerase, secreted protein
20	 54.30	0	19705..20076	+	123	62388912	-	cg0027	-	MarR family regulatory protein
21	 55.17	0	20199..21068	+	289	62388913	-	cg0029	-	protease with chaperone function
22	 49.15	-1	21071..21247	-	58	62388914	-	cg0031	-	reductase related to diketogulonate reductase
23	 57.84	0	21426..21527	+	33	62388915	-	cg0033	-	putative secreted protein
24	 50.09	-1	21597..22127	+	176	62388916	-	cg0034	-	hypothetical protein
25	 53.43	0	22164..23402	+	412	62388917	-	cg0035	-	hypothetical protein
26	 56.55	0	23612..23779	-	55	62388918	tnp22a(ISCg22a)	cg0037	-	transposase-fragment
27	 54.91	0	24214..24732	+	172	62388919	-	cg0038	-	organic hydroperoxide resistance protein
28	 45.27	-2	24882..26573	-	563	62388920	-	cg0039	-	putative transcriptional regulator
29	 58.63	+1	26819..28099	-	426	62388921	-	cg0040	-	hypothetical protein
30	 51.52	0	28161..29117	-	318	62388922	-	cg0041	-	putative solute-binding lipoprotein, signal peptid
31	 51.17	0	29114..29965	-	283	62388923	-	cg0042	-	ABC transporter protein membrane protein
32	 54.39	0	29995..30654	+	219	62388924	-	cg0043	-	ABC transporter ATP-binding protein
33	 54.37	0	30697..31680	+	327	62388925	-	cg0044	-	solute-binding lipoprotein, signal peptide
34	 53.90	0	31677..32702	+	341	62388926	-	cg0045	-	ABC transporter membrane protein
35	 58.66	+1	32699..33460	+	253	62388927	-	cg0046	-	ABC transporter ATP-binding protein
36	 55.97	0	33462..34274	-	270	62388928	-	cg0047	-	hypothetical protein
37	 58.10	0	34378..34902	+	174	62388929	ppiA	cg0048	-	peptidyl-prolyl cis-trans isomerase B
38	 49.42	-1	34982..35671	+	229	62388930	-	cg0049	-	putative transmembrane protein, rhomboid family
39	 50.35	0	36244..37242	-	332	62388931	-	cg0051	-	transcription regulator protein, AraC typ
40	 54.61	0	37182..38201	+	339	62388932	-	cg0052	-	putative IRON-siderophore uptake system transmembr
41	 56.41	0	38202..38981	+	259	62388933	-	cg0053	-	putative IRON-siderophore uptake system ATP-bindin
42	 53.58	0	38978..39802	+	274	62388934	-	cg0054	-	iron-chelator utilization protein
43	 51.65	0	40186..40458	-	90	62388935	-	cg0055	-	putative septation inhibitor protein
44	 58.94	+1	40573..42513	-	646	62388936	pknB	cg0057	-	serine/threonine kinase
45	 55.67	0	42510..43919	-	469	62388937	pknA	cg0059	-	serine/threonine protein kinase
46	 55.86	0	43923..45347	-	474	62388938	pbpA	cg0060	-	D-alanyl-D-alanine carboxypeptidase
47	 55.13	0	45344..46669	-	441	62388939	rodA	cg0061	-	FtsW/RodA/SpoVE family cell cycle protein
48	 54.94	0	46666..48021	-	451	62388940	ppp	cg0062	-	protein phosphatase
49	 58.28	+1	48021..48485	-	154	62388941	-	cg0063	-	hypothetical protein
50	 51.39	0	48502..49398	-	298	62388942	-	cg0064	-	hypothetical protein
51	 49.79	-1	49894..50616	-	240	62388943	-	cg0065	-	heme peroxidase superfamily protein
52	 45.36	-2	50963..51436	-	157	62388944	-	cg0066	-	hypothetical protein
53	 57.64	0	51623..53095	-	490	62388945	gabD3	cg0067	-	succinate-semialdehyde dehydrogenase (NADP+)
54	 55.80	0	53055..54011	+	318	62388946	-	cg0070	-	phenol 2-monooxygenase
55	 52.74	0	54179..55549	+	456	62388947	-	cg0071	-	metallo-beta-lactamase superfamily protein
56	 60.51	+1	55626..56372	-	248	62388948	-	cg0072	-	hypothetical protein
57	 48.64	-1	56383..56676	-	97	62388949	-	cg0073	-	sulfurtransferase
58	 49.83	-1	56677..57270	-	197	62388950	-	cg0074	-	sulfurtransferase
59	 52.33	0	57397..57654	+	85	62388951	-	cg0075	-	hypothetical protein
60	 49.42	-1	58087..58944	+	285	62388952	-	cg0076	-	hypothetical protein
61	 52.55	0	59091..59933	+	280	62388953	-	cg0077	-	hypothetical protein
62	 54.20	0	59952..60665	+	237	62388954	-	cg0078	-	hypothetical protein
63	 54.24	0	60699..62324	+	541	62388955	-	cg0079	-	hypothetical protein
64	 56.51	0	62387..63508	-	373	62388956	-	cg0080	-	CorA-like Mg2+ transporter protein
65	 49.33	-1	63591..64040	-	149	62388957	-	cg0081	-	putative tautomerase
66	 58.58	+1	64163..65461	+	432	62388958	-	cg0082	-	voltage gated chloride channel
67	 55.56	0	65505..66197	-	230	62388959	-	cg0083	-	mononucleotide transporter
68	 57.28	0	66699..67976	+	425	62388960	phoH1	cg0085	-	ATPase related to phosphate starvation-inducible protein
69	 53.23	0	68249..68635	-	128	62388961	-	cg0087	-	transmembrane transport protein
70	 59.96	+1	68718..70298	-	526	62388962	citP	cg0088	-	citrate transporter
71	 53.99	0	70507..72162	+	551	62388963	citA	cg0089	-	two-component system sensory transduction histidine kinase
72	 55.56	0	72162..72818	+	218	62388964	citB	cg0090	-	two-component response regulator CitB
73	 51.69	0	72815..73729	-	304	62388965	-	cg0091	-	D-isomer specific 2-hydroxyacid dehydrogenase
74	 50.69	0	73845..74276	+	143	62388966	-	cg0092	-	hypothetical protein
75	 54.63	0	74491..75495	+	334	62388967	bioB	cg0095	-	biotin synthase
76	 57.92	0	75507..75746	+	79	62388968	-	cg0096	-	hypothetical protein
77	 57.82	0	75746..76039	+	97	62388969	-	cg0097	-	hypothetical protein
78	 52.89	0	82118..83569	-	483	62388970	-	cg0103	-	major facilitator superfamily permease
79	 52.75	0	83689..84960	-	423	62388971	codA	cg0104	-	creatinine deaminase
80	 54.05	0	85096..85404	-	102	62388972	-	cg0105	-	hypothetical protein
81	 57.75	0	85661..86221	-	186	62388973	-	cg0107	-	hypothetical protein
82	 59.59	+1	86412..87245	+	277	62388974	-	cg0108	-	putative SIR2-like regulatory protein
83	 54.36	0	87559..88533	-	324	62388975	-	cg0109	-	triacylglycerol lipase precursor
84	 56.81	0	88543..89445	-	300	62388976	-	cg0110	-	triacylglycerol lipase precursor
85	 52.93	0	89598..90449	+	283	62388977	-	cg0111	-	hypothetical protein
86	 48.26	-1	90459..90974	-	171	62388978	ureR	cg0112	-	MarR family regulatory protein
87	 52.81	0	91175..91477	+	100	62388979	ureA	cg0113	-	urease subunit gamma
88	 55.21	0	91504..91992	+	162	62388980	ureB	cg0114	-	urease subunit beta
89	 52.66	0	91993..93705	+	570	62388981	ureC	cg0115	-	urease subunit alpha
90	 50.42	0	93730..94203	+	157	62388982	ureE	cg0116	-	urease accessory protein UreE
91	 51.54	0	94203..94883	+	226	62388983	ureF	cg0117	-	urease accessory protein
92	 49.84	-1	94900..95517	+	205	62388984	ureG	cg0118	-	urease accessory protein
93	 55.52	0	95518..96369	+	283	62388985	ureD	cg0119	-	urease accessory protein
94	 52.31	0	96366..97145	-	259	62388986	-	cg0120	-	esterase/lipase/thioesterase family protein
95	 57.84	0	97317..98471	-	384	62388987	-	cg0121	-	major facilitator superfamily permease
96	 54.64	0	98806..101583	-	925	62388988	-	cg0122	-	hypothetical protein
97	 54.95	0	101610..103436	-	608	62388989	-	cg0123	-	putative HEAT shock protein (HSP90-family)
98	 56.00	0	103480..104913	+	477	62388990	amn	cg0124	-	AMP nucleosidase
99	 57.22	0	105171..105752	-	193	62388991	-	cg0126	-	hypothetical protein
100	 58.92	+1	105839..106393	-	184	62388992	-	cg0127	-	thiamine pyrophosphate dependent enzyme
54.23	MEAN

3.92	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.