IslandPath Analysis: Cupriavidus taiwanensis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.52   STD DEV: 3.97
Cupriavidus taiwanensis, complete genome - 1..3416911
3135 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.48	0	707..2476	+	589	188590796	dnaA	RALTA_A0001	-	chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator
2	 61.92	-1	2901..4016	+	371	188590797	dnaN	RALTA_A0002	-	DNA polymerase III, beta-subunit
3	 60.89	-1	4270..6795	+	841	188590798	gyrB	RALTA_A0003	-	DNA gyrase, subunit B (type II topoisomerase)
4	 52.03	-2	7033..7401	+	122	188590799	-	RALTA_A0004	-	putative Type I restriction enzyme R fragment (HSDR), N_term motif
5	 62.62	-1	7422..8681	+	419	188590800	-	RALTA_A0005	-	Transposase of insertion sequence ISRta2, IS256 family
6	 62.27	-1	8773..9159	-	128	188590801	-	RALTA_A0006	-	conserved hypothetical protein, DUF350; putative transmembrane protein
7	 70.82	0	9231..9953	-	240	188590802	-	RALTA_A0007	-	hypothetical protein
8	 64.29	0	9957..11132	-	391	188590803	gsp	RALTA_A0008	-	Bifunctional glutathionylspermidine synthetase/Glutathionylspermidine amidase
9	 70.58	0	11132..12586	-	484	188590804	-	RALTA_A0009	-	Homospermidine synthase (HSS)
10	 72.03	+1	12702..13652	-	316	188590805	-	RALTA_A0010	-	Formimidoylglutamase
11	 66.93	0	13649..14410	-	253	188590806	glnQ	RALTA_A0011	-	high-affinity glutamine transport protein, ABC transporter, ATP binding component
12	 64.87	0	14407..15075	-	222	188590807	glnP	RALTA_A0012	-	high-affinity glutamine transport protein, ABC transporter, membrane component
13	 64.68	0	15094..15849	-	251	188590808	glnH	RALTA_A0013	-	high-affinity glutamine transport protein, ABC transporter, periplasmic binding component peri_bind)
14	 70.82	0	15930..16724	-	264	188590809	-	RALTA_A0014	-	putative transcriptional regulator, IclR family
15	 70.30	0	16859..17518	-	219	188590810	-	RALTA_A0015	-	Putative isoprenylcysteine carboxyl methyltransferase transmembrane protein
16	 62.04	-1	17664..17987	+	107	188590811	-	RALTA_A0016	-	hypothetical protein
17	 67.27	0	18007..18507	-	166	188590812	-	RALTA_A0017	-	hypothetical protein
18	 70.36	0	18521..19414	-	297	188590813	-	RALTA_A0018	-	conserved hypothetical protein; putative methyltransferase
19	 71.62	+1	19479..19922	+	147	188590814	-	RALTA_A0019	-	putative transcriptional regulator, MerR family
20	 69.44	0	19935..21734	-	599	188590815	-	RALTA_A0020	-	putative METHYL-ACCEPTING CHEMOTAXIS TRANSMEMBRANE receptor
21	 70.65	0	22066..23244	+	392	188590816	-	RALTA_A0021	-	putative lipoprotein
22	 68.70	0	23386..24321	+	311	188590817	-	RALTA_A0022	-	conserved hypothetical protein, DUF72; putative exported protein
23	 68.51	0	24344..25753	+	469	188590818	dbpA	RALTA_A0023	-	ATP-dependent RNA helicase, stimulated by 23S rRNA
24	 63.49	-1	25908..26348	+	146	188590819	-	RALTA_A0024	-	conserved hypothetical protein, CBS domain
25	 72.63	+1	26521..28146	+	541	188590820	-	RALTA_A0025	-	putative transporter, MSF family; putative Drug resistance transporter EmrB/QacA subfamily
26	 67.46	0	28229..28858	+	209	188590821	-	RALTA_A0026	-	putative glutathione peroxydase
27	 66.51	0	28887..29513	-	208	188590822	gst	RALTA_A0027	-	glutathionine S-transferase
28	 65.16	0	29655..30383	-	242	188590823	-	RALTA_A0028	-	putative Arylmalonate decarboxylase / malonate isomerase
29	 65.05	0	30481..31779	-	432	188590824	-	RALTA_A0029	-	putative transporter, MFS family; putative Sugar phosphate permease
30	 70.83	0	31970..32689	+	239	188590825	-	RALTA_A0030	-	putative transcriptional regulator, GntR family
31	 69.61	0	32722..33570	+	282	188590826	-	RALTA_A0031	-	4-hydroxyphenylacetate degradation bifunctional protein: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase ; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase
32	 69.64	0	33775..35019	+	414	188590827	-	RALTA_A0032	-	putative HIPPURATE HYDROLASE
33	 72.62	+1	35044..35916	-	290	188590828	-	RALTA_A0033	-	putative transcriptional regulator, Arac family
34	 68.19	0	36044..37291	+	415	188590829	fsr	RALTA_A0034	-	fosmidomycin/multidrug transporter, MFS family
35	 72.46	+1	37328..37879	-	183	188590830	-	RALTA_A0035	-	putative TRANSCRIPTIONal REGULATOR, MarR family
36	 73.46	+1	37970..38881	+	303	188590831	-	RALTA_A0036	-	TRANSMEMBRANE PROTEIN, similar to pecM, Involved in pectinase, cellulase, and blue pigment regulation
37	 75.00	+1	38979..39242	+	87	188590832	-	RALTA_A0037	-	hypothetical protein
38	 69.51	0	39356..40339	+	327	188590833	-	RALTA_A0038	-	conserved hypothetical protein, UPF0065
39	 70.63	0	40372..41052	-	226	188590834	-	RALTA_A0039	-	putative RESPONSE REGULATOR
40	 69.82	0	41283..42011	+	242	188590835	-	RALTA_A0040	-	putative RESPONSE REGULATOR
41	 76.56	+2	42008..42775	+	255	188590836	-	RALTA_A0041	-	hypothetical protein; putative exported protein; putative histine kinase of the two-component system
42	 62.66	-1	42827..43924	-	365	188590837	-	RALTA_A0042	-	putative OUTER MEMBRANE PORIN
43	 63.53	-1	44263..44517	-	84	188590838	minE	RALTA_A0043	-	cell division topological specificity factor, reverses MinC inhibition of FtsZ ring formation
44	 63.60	0	44539..45354	-	271	188590839	minD	RALTA_A0044	-	membrane ATPase of the MinC-MinD-MinE system
45	 70.17	0	45421..46248	-	275	188590840	minC	RALTA_A0045	-	cell division inhibitor, inhibits FtsZ ring formation
46	 66.98	0	46461..47411	+	316	188590841	-	RALTA_A0046	-	putative Mg2+ transporter protein, CorA-like
47	 69.52	0	47557..48258	+	233	188590842	-	RALTA_A0047	-	conserved hypothetical protein, tetratricopeptide repeats; putative exported protein
48	 66.46	0	48458..49915	-	485	188590843	gatB	RALTA_A0048	-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B)
49	 75.99	+2	50005..51120	-	371	188590844	-	RALTA_A0049	-	putative enzyme, Dienelactone hydrolase family
50	 67.97	0	51147..51605	-	152	188590845	-	RALTA_A0050	-	putative lipoprotein; putative membrane protein
51	 71.45	0	51608..53113	-	501	188590846	gatA	RALTA_A0051	-	Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A)
52	 65.33	0	53186..53485	-	99	188590847	gatC	RALTA_A0052	-	Glutamyl-tRNA(Gln) amidotransferase subunit C (Glu-ADT subunit C)
53	 66.09	0	54109..55152	+	347	188590848	mreB	RALTA_A0053	-	cell wall structural complex MreBCD, actin-like component MreB
54	 71.95	+1	55349..56314	+	321	188590849	mreC	RALTA_A0054	-	cell wall structural complex MreBCD, actin-like component MreC
55	 68.03	0	56311..56823	+	170	188590850	mreD	RALTA_A0055	-	cell wall structural complex MreBCD transmembrane component MreD
56	 67.97	0	56896..59202	+	768	188590851	mrdA	RALTA_A0056	-	Peptidoglycan glycosyltransferase (penicillin-binding protein 2)
57	 64.18	0	59232..60356	+	374	188590852	mrdB	RALTA_A0057	-	cell wall shape-determining protein
58	 69.14	0	60498..61184	+	228	188590853	-	RALTA_A0058	-	conserved hypothetical protein, DUF484
59	 72.95	+1	61235..62284	+	349	188590854	xerC	RALTA_A0059	-	site-specific tyrosine recombinase
60	 69.69	0	62286..63212	-	308	188590855	gcvA2	RALTA_A0060	-	transcriptional regulator of Glycine cleavage system operon, LysR family
61	 67.75	0	63490..63858	+	122	188590856	-	RALTA_A0061	-	hypothetical protein
62	 68.86	0	64013..64741	+	242	188590857	lipB	RALTA_A0062	-	Lipoyltransferase (Lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B)
63	 65.67	0	64782..65786	+	334	188590858	lipA	RALTA_A0063	-	lipoyl/lipoate synthase, an iron-sulfur enzyme
64	 58.33	-2	65888..66163	-	91	188590859	kluB	RALTA_A0064	-	toxin of a toxin/antitoxin system
65	 63.44	-1	66197..66475	-	92	188590860	kluA	RALTA_A0065	-	antitoxin of a toxin/antitoxin system
66	 71.14	0	66687..67334	+	215	188590861	-	RALTA_A0066	-	Allophanate hydrolase subunit1 (ahs1)
67	 73.82	+1	67331..68350	+	339	188590862	-	RALTA_A0067	-	allophanate hydrolase, subunit2 (ahs2)
68	 70.45	0	68390..69130	+	246	188590863	-	RALTA_A0068	-	putative lipoprotein, LamB/YcsF family protein
69	 69.27	0	69238..69966	+	242	188590864	-	RALTA_A0069	-	conserved hypothetical protein, DUF969; putative TRANSMEMBRANE PROTEIN
70	 66.88	0	69977..70927	+	316	188590865	-	RALTA_A0070	-	conserved hypothetical protein, DUF979; putative TRANSMEMBRANE PROTEIN
71	 71.27	0	70944..71594	+	216	188590866	pcp1	RALTA_A0071	-	PYRROLIDONE-CARBOXYLATE PEPTIDASE (5-OXOPROLYL-PEPTIDASE) (C15 exopeptidase)
72	 69.62	0	71621..72871	-	416	188590867	-	RALTA_A0072	-	conserved hypothetical protein; putative TRANSMEMBRANE PROTEIN
73	 74.01	+1	72890..73543	-	217	188590868	-	RALTA_A0073	-	hypothetical protein
74	 70.37	0	73609..74553	-	314	188590869	-	RALTA_A0074	-	putative ABC-type transporter, periplasmic component
75	 71.54	+1	74550..75410	-	286	188590870	-	RALTA_A0075	-	putative ABC transporter, ATP binding component
76	 69.05	0	75407..76537	-	376	188590871	-	RALTA_A0076	-	conserved hypothetical protein, DUF140; putative TRANSMEMBRANE PROTEIN
77	 75.18	+1	76769..77602	+	277	188590872	-	RALTA_A0077	-	BIOTIN-[ACETYL-COA-CARBOXYLASE] SYNTHETASE
78	 75.23	+1	77599..78450	+	283	188590873	-	RALTA_A0078	-	TRANSCRIPTION REGULATION ACCESSORY FACTOR, similar to B.pertussis bvg
79	 73.71	+1	78484..78696	+	70	188590874	-	RALTA_A0079	-	conserved hypothetical protein; PUTATIVE SIGNAL PEPTIDE PROTEIN (fragment)
80	 68.48	0	78713..79207	-	164	188590875	aut	RALTA_A0080	-	aut gene, putative Cytidylyltransferase
81	 70.83	0	79242..79505	+	87	188590876	-	RALTA_A0081	-	hypothetical protein
82	 63.54	-1	79575..80438	-	287	188590877	-	RALTA_A0082	-	Putative ferritin/ribonucleotide reductase-like protein
83	 74.02	+1	80640..81917	-	425	188590878	-	RALTA_A0083	-	conserved hypothetical protein; putative exported protein
84	 72.22	+1	81955..82764	-	269	188590879	-	RALTA_A0084	-	hypothetical protein
85	 69.29	0	82830..83705	-	291	188590880	-	RALTA_A0085	-	putative ENOYL-COA HYDRATASE / isolerase
86	 66.36	0	83782..84762	-	326	188590881	-	RALTA_A0086	-	putative 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway): COG0179
87	 70.17	0	84839..85837	-	332	188590882	-	RALTA_A0087	-	conserved hypothetical protein, UPF0065
88	 67.75	0	86017..86850	+	277	188590883	-	RALTA_A0088	-	putative TRANSCRIPTIONal REGULATOR, IclR family
89	 74.11	+1	86936..87916	+	326	188590884	-	RALTA_A0089	-	hypothetical protein
90	 69.40	0	87967..88809	+	280	188590885	pcaD2	RALTA_A0090	-	B-KETOADIPATE ENOL-LACTONE HYDROLASE (putative)
91	 57.36	-2	89048..89305	+	85	188590886	-	RALTA_A0091	-	hypothetical protein
92	 66.92	0	89411..89803	-	130	188590887	-	RALTA_A0092	-	conserved hypothetical protein, weak Rhodanese/Cell cycle control phosphatase domain
93	 68.08	0	90000..91061	+	353	188590888	metHa	RALTA_A0093	-	5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE (METHIONINE SYNTHASE, VITAMIN-B12 DEPENDENT ISOZYME) PROTEIN
94	 65.65	0	91079..93826	+	915	188590889	metHb	RALTA_A0094	-	5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE (METHIONINE SYNTHASE, VITAMIN-B12 DEPENDENT ISOZYME) PROTEIN
95	 73.59	+1	94089..94550	+	153	188590890	-	RALTA_A0095	-	hypothetical protein
96	 62.40	-1	94870..95502	+	210	188590891	vsrD	RALTA_A0096	-	RESPONSE REGULATOR, LuxR family
97	 63.48	-1	95558..95965	+	135	188590892	-	RALTA_A0097	-	putative response regulator, CheY family
98	 68.59	0	95970..97373	-	467	188590893	vsrA	RALTA_A0098	-	sensor histidine kinase
99	 59.52	-2	97695..97862	+	55	188590894	-	RALTA_A0099	-	conserved hypothetical protein, DUF1328
100	 69.70	0	97915..98343	+	142	188590895	-	RALTA_A0100	-	conserved hypothetical protein, DUF883
67.52	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.