IslandPath Analysis: Thermodesulfovibrio yellowstonii DSM 11347



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.86   STD DEV: 3.63
Thermodesulfovibrio yellowstonii DSM 11347, complete genome - 1..2003803
2033 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.13	0	14..1387	+	457	206889903	cobB	THEYE_A0001	-	cobyrinic Acid a,c-diamide synthase
2	 32.92	0	1380..2354	+	324	206890635	-	THEYE_A0002	-	hypothetical protein
3	 37.20	0	2495..2830	+	111	206890766	-	THEYE_A0003	-	sulfite reductase, dissimilatory-type gamma subunit
4	 31.41	0	2912..3430	+	172	206890709	-	THEYE_A0004	-	hypothetical protein
5	 37.07	0	3456..4445	+	329	206889259	-	THEYE_A0005	-	DsrM protein
6	 39.03	+1	4450..6063	+	537	206890334	-	THEYE_A0006	-	DsrK protein
7	 35.82	0	6065..6466	+	133	206891022	-	THEYE_A0007	-	cytochrome c family protein
8	 35.54	0	6463..7233	+	256	206891168	-	THEYE_A0008	-	tetrathionate reductase, subunit B
9	 38.37	+1	7247..8437	+	396	206889766	-	THEYE_A0009	-	polysulfide reductase, subunit C, putative
10	 35.22	0	8544..10190	-	548	206890613	pyrG	THEYE_A0010	-	CTP synthase
11	 30.86	0	10169..10936	-	255	206889456	kdsB	THEYE_A0011	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
12	 27.48	-1	10969..12558	+	529	206889475	lnt	THEYE_A0012	-	apolipoprotein N-acyltransferase
13	 31.13	0	12787..13650	+	287	206890892	-	THEYE_A0013	-	peptide chain release factor 2
14	 22.50	-2	13686..13805	+	39	206890526	-	THEYE_A0014	-	hypothetical protein
15	 31.66	0	13985..15301	+	438	206889361	dnaA	THEYE_A0015	-	chromosomal replication initiator protein DnaA
16	 33.33	0	15325..16431	+	368	206891136	dnaN	THEYE_A0016	-	DNA polymerase III, beta subunit
17	 34.78	0	16436..18715	+	759	206889996	gyrB	THEYE_A0017	-	DNA gyrase, B subunit
18	 37.02	0	18724..19998	+	424	206890029	serS	THEYE_A0018	-	seryl-tRNA synthetase
19	 32.15	0	19995..21182	+	395	206890925	-	THEYE_A0019	-	hypothetical protein
20	 38.95	+1	21179..21445	+	88	206889780	-	THEYE_A0020	-	flagellar biosynthetic protein FlhB
21	 30.30	0	21442..22233	+	263	206889647	trpC	THEYE_A0021	-	indole-3-glycerol phosphate synthase
22	 37.69	+1	22304..24094	+	596	206889393	-	THEYE_A0022	-	indolepyruvate oxidoreductase subunit IorA
23	 36.04	0	24104..24547	+	147	206890491	-	THEYE_A0023	-	indolepyruvate oxidoreductase subunit IorB
24	 39.91	+1	24534..25811	+	425	206889524	-	THEYE_A0024	-	phenylacetate-coenzyme A ligase
25	 32.78	0	25850..26746	-	298	206890876	-	THEYE_A0025	-	universal stress protein, putative
26	 34.48	0	26757..27806	-	349	206889293	-	THEYE_A0026	-	arsenic oxyanion-translocation pump
27	 31.24	0	27818..28246	-	142	206890690	-	THEYE_A0027	-	hypothetical protein
28	 34.45	0	28473..29459	+	328	206891045	-	THEYE_A0028	-	galactose-1-phosphate uridylyltransferase
29	 39.53	+1	29534..31501	-	655	206890430	acsA	THEYE_A0029	-	acetate--CoA ligase
30	 36.84	0	31548..33086	-	512	206890784	-	THEYE_A0030	-	cation/acetate symporter ActP
31	 30.98	0	33089..33385	-	98	206890152	-	THEYE_A0031	-	inner membrane protein YjcH
32	 29.44	-1	33397..34089	-	230	206890301	-	THEYE_A0032	-	DNA polymerase III alpha subunit
33	 33.75	0	34092..35993	-	633	206889630	-	THEYE_A0033	-	putative nucleotidyltransferase family
34	 31.22	0	36117..37958	-	613	206890514	-	THEYE_A0034	-	putative nucleotidyltransferase family
35	 39.20	+1	38193..40202	-	669	206889671	-	THEYE_A0035	-	sodium/solute symporter, putative
36	 34.11	0	40205..40462	-	85	206890545	-	THEYE_A0036	-	membrane protein
37	 29.79	-1	40474..41151	-	225	206889195	-	THEYE_A0037	-	DNA polymerase III PolC-type, putative
38	 35.11	0	41304..42539	-	411	206889193	-	THEYE_A0038	-	oxalate/formate antiporter
39	 33.85	0	42653..44002	-	449	206890129	-	THEYE_A0039	-	acetoacetate metabolism regulatory protein AtoC
40	 35.11	0	43999..46695	-	898	206891146	-	THEYE_A0040	-	acetyl-CoA synthetase
41	 35.27	0	46682..49162	-	826	206889694	gyrA	THEYE_A0041	-	DNA gyrase, A subunit
42	 33.83	0	49229..49429	-	66	206890069	-	THEYE_A0042	-	putative regulatory protein, FmdB family
43	 31.47	0	49542..50132	+	196	206890921	-	THEYE_A0043	-	hypothetical protein
44	 36.98	0	50134..50901	+	255	206889305	-	THEYE_A0044	-	hypothetical protein
45	 32.11	0	50898..51551	+	217	206890221	-	THEYE_A0045	-	hypothetical protein
46	 33.85	0	51551..52906	+	451	206891112	glmM	THEYE_A0046	-	phosphoglucosamine mutase
47	 33.33	0	52928..53602	-	224	206889733	-	THEYE_A0047	-	phosphate import ATP-binding protein PstB 1
48	 38.80	+1	53593..54306	-	237	206890902	-	THEYE_A0048	-	permease component of tungstate ABC transporter
49	 35.56	0	54310..55116	-	268	206889499	-	THEYE_A0049	-	extracellular tungstate binding protein
50	 35.56	0	55404..55808	-	134	206890623	-	THEYE_A0050	-	molybdenum transport regulatory protein ModE
51	 33.89	0	55914..56270	-	118	206889229	-	THEYE_A0051	-	hypothetical protein
52	 33.33	0	56270..57106	-	278	206890222	-	THEYE_A0052	-	membrane protein
53	 31.60	0	57226..58032	+	268	206889604	-	THEYE_A0053	-	hypothetical protein
54	 32.88	0	57998..58882	+	294	206890528	xerD	THEYE_A0054	-	tyrosine recombinase XerD
55	 26.67	-1	58905..59024	+	39	206889639	-	THEYE_A0055	-	hypothetical protein
56	 38.87	+1	59109..59867	+	252	206890331	-	THEYE_A0056	-	conjugative transfer: surface exclusion
57	 28.87	-1	59998..60714	+	238	206889375	-	THEYE_A0057	-	hypothetical protein
58	 31.19	0	60750..61820	-	356	206889736	-	THEYE_A0059	-	CRISPR-associated protein, NE0113 family
59	 21.05	-2	61809..61922	+	37	206891193	-	THEYE_A0058	-	hypothetical protein
60	 33.07	0	62669..64978	+	769	206889450	csm1_1	THEYE_A0060	-	CRISPR-associated protein, Csm1 family
61	 34.22	0	64971..65420	+	149	206890932	csm2_1	THEYE_A0061	-	CRISPR-associated protein, Csm2 family
62	 35.75	0	65420..66205	+	261	206889624	csm3_1	THEYE_A0062	-	CRISPR-associated RAMP protein, Csm3 family
63	 33.03	0	66218..67201	+	327	206890839	csm4	THEYE_A0063	-	CRISPR-associated RAMP protein, Csm4 family
64	 32.38	0	67206..68357	+	383	206891139	csm5_1	THEYE_A0064	-	CRISPR-associated RAMP protein, Csm5 family
65	 31.86	0	68361..69107	+	248	206889594	-	THEYE_A0065	-	hypothetical protein
66	 32.29	0	69137..70288	+	383	206890262	-	THEYE_A0066	-	hypothetical protein
67	 37.75	+1	70291..70539	+	82	206890814	-	THEYE_A0067	-	hypothetical protein
68	 32.69	0	70542..71480	+	312	206889918	cas6_1	THEYE_A0068	-	CRISPR-associated protein Cas6
69	 31.20	0	71533..73782	+	749	206891046	-	THEYE_A0069	-	DNA internalization-related competence protein ComEC/Rec2
70	 34.31	0	73792..74403	+	203	206890114	hisH	THEYE_A0070	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
71	 33.65	0	74400..76271	+	623	206890330	selB	THEYE_A0071	-	selenocysteine-specific translation elongation factor
72	 35.50	0	76273..77703	+	476	206889412	-	THEYE_A0072	-	MucD
73	 32.90	0	77790..78704	+	304	206890988	-	THEYE_A0073	-	pili retraction protein PilT
74	 32.39	0	78706..79869	+	387	206890451	-	THEYE_A0074	-	IspD/IspF bifunctional enzyme
75	 39.23	+1	79858..80874	-	338	206890296	-	THEYE_A0075	-	hydroxyacid oxidase 1
76	 33.12	0	81657..82595	+	312	206889257	-	THEYE_A0078	-	radical SAM protein, family
77	 38.05	+1	82540..84066	+	508	206890761	-	THEYE_A0079	-	putative Mg chelatase
78	 35.36	0	84067..84708	+	213	206889496	-	THEYE_A0080	-	hypothetical protein
79	 35.85	0	84760..86670	+	636	206889866	glgB	THEYE_A0081	-	1,4-alpha-glucan branching enzyme
80	 30.75	0	86829..87641	+	270	206890823	-	THEYE_A0082	-	methyltransferase
81	 36.99	0	87813..89015	+	400	206891081	-	THEYE_A0083	-	Na/H+ antiporter
82	 38.14	+1	89005..90357	-	450	206890139	-	THEYE_A0084	-	hypothetical protein
83	 35.73	0	90463..90879	+	138	206889898	-	THEYE_A0085	-	hypothetical protein
84	 28.65	-1	90872..91063	+	63	206890044	-	THEYE_A0086	-	hypothetical protein
85	 33.21	0	91085..91867	+	260	206891170	-	THEYE_A0087	-	lipoate protein ligase, putative
86	 23.23	-2	92461..92658	+	65	206889749	-	THEYE_A0088	-	hypothetical protein
87	 32.35	0	92708..93517	-	269	206890962	-	THEYE_A0089	-	hypothetical protein
88	 34.49	0	93508..94284	-	258	206890535	lpxA	THEYE_A0090	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
89	 37.83	+1	94297..94719	-	140	206889615	fabZ	THEYE_A0091	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
90	 33.43	0	94737..95765	-	342	206890404	lpxD	THEYE_A0092	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
91	 30.17	-1	95762..96298	-	178	206889326	-	THEYE_A0093	-	outer membrane protein, putative
92	 33.24	0	96313..98559	-	748	206891173	-	THEYE_A0094	-	outer membrane protein, putative
93	 32.46	0	98593..99972	-	459	206889236	-	THEYE_A0095	-	phosphomannomutase/phosphoglucomutase
94	 32.91	0	99953..101374	-	473	206890518	-	THEYE_A0096	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
95	 30.88	0	101384..102034	-	216	206889220	ribE	THEYE_A0097	-	riboflavin synthase, alpha subunit
96	 33.83	0	102034..102639	-	201	206890085	lepB	THEYE_A0098	-	signal peptidase I
97	 34.85	0	102650..104431	-	593	206890984	lepA	THEYE_A0099	-	GTP-binding protein LepA
98	 34.17	0	104438..105391	-	317	206889739	-	THEYE_A0100	-	transcriptional regulator
99	 34.96	0	105525..106262	+	245	206890612	fabG	THEYE_A0101	-	3-oxoacyl-(acyl-carrier-protein) reductase
100	 37.97	+1	106286..106522	+	78	206889506	acpP	THEYE_A0102	-	acyl carrier protein
33.86	MEAN

3.63	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.