IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.80   STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.60	-1	2826..3659	+	277	121602920	-	Pnap_0002	-	hypothetical protein
2	 59.37	0	3701..4522	-	273	121602921	-	Pnap_0003	-	hypothetical protein
3	 66.18	0	4747..4953	+	68	121602922	-	Pnap_0004	-	hypothetical protein
4	 67.19	0	5033..5608	+	191	121602923	-	Pnap_0005	-	NnrU family protein
5	 71.11	+1	5834..6508	+	224	121602924	-	Pnap_0006	-	hypothetical protein
6	 53.26	-1	6653..6913	-	86	121602925	-	Pnap_0007	-	cell division topological specificity factor MinE
7	 62.62	0	6920..7735	-	271	121602926	-	Pnap_0008	-	septum site-determining protein MinD
8	 67.70	0	7871..8641	-	256	121602927	-	Pnap_0009	-	septum site-determining protein MinC
9	 60.42	0	8791..9030	+	79	121602928	-	Pnap_0010	-	hypothetical protein
10	 69.20	+1	9140..9574	+	144	121602929	-	Pnap_0011	-	hypothetical protein
11	 66.76	0	9620..10642	-	340	121602930	-	Pnap_0012	-	hypothetical protein
12	 67.28	0	10635..11936	-	433	121602931	-	Pnap_0013	-	cardiolipin synthase 2
13	 64.63	0	12012..12845	-	277	121602932	-	Pnap_0014	-	endonuclease/exonuclease/phosphatase
14	 64.53	0	13194..13568	+	124	121602933	-	Pnap_0015	-	hypothetical protein
15	 66.20	0	13600..14670	-	356	121602934	-	Pnap_0016	-	NADPH-dependent FMN reductase
16	 65.79	0	14939..15508	-	189	121602935	-	Pnap_0017	-	hypothetical protein
17	 66.06	0	15738..16397	+	219	121602936	-	Pnap_0018	-	hypothetical protein
18	 63.69	0	16663..18579	+	638	121602937	-	Pnap_0019	-	thiamine biosynthesis protein ThiC
19	 69.85	+1	18854..19921	+	355	121602938	-	Pnap_0020	-	glycine oxidase ThiO
20	 63.33	0	19946..20155	+	69	121602939	-	Pnap_0021	-	thiamine biosynthesis protein ThiS
21	 69.47	+1	20158..20976	+	272	121602940	thiG	Pnap_0022	-	thiazole synthase
22	 69.31	+1	21038..21679	+	213	121602941	-	Pnap_0023	-	thiamine-phosphate pyrophosphorylase
23	 53.85	-1	21825..22331	+	168	121602942	-	Pnap_0024	-	hypothetical protein
24	 71.06	+1	22361..23635	-	424	121602943	-	Pnap_0025	-	glycosyl transferase family protein
25	 70.83	+1	23632..24183	-	183	121602944	-	Pnap_0026	-	hypothetical protein
26	 73.29	+1	24208..25053	-	281	121602945	-	Pnap_0027	-	hypothetical protein
27	 67.62	0	25129..27234	-	701	121602946	-	Pnap_0028	-	vault protein inter-alpha-trypsin subunit
28	 68.20	+1	27624..29060	-	478	121602947	-	Pnap_0029	-	sensory histidine kinase CreC
29	 68.90	+1	29057..29905	-	282	121602948	-	Pnap_0030	-	two component transcriptional regulator
30	 68.10	0	29940..31055	-	371	121602949	-	Pnap_0031	-	NADH:flavin oxidoreductase/NADH oxidase
31	 57.53	0	31502..31687	+	61	121602950	-	Pnap_0032	-	hypothetical protein
32	 61.27	0	31692..32006	+	104	121602951	-	Pnap_0033	-	hypothetical protein
33	 65.26	0	32075..32929	+	284	121602952	-	Pnap_0034	-	transglutaminase domain-containing protein
34	 71.44	+1	33135..34937	-	600	121602953	-	Pnap_0035	-	amidase
35	 69.88	+1	34934..38545	-	1203	121602954	-	Pnap_0036	-	biotin carboxylation domain-containing protein
36	 65.14	0	38686..39339	-	217	121602955	-	Pnap_0037	-	hypothetical protein
37	 69.93	+1	39336..40070	-	244	121602956	-	Pnap_0038	-	hypothetical protein
38	 65.70	0	40067..40897	-	276	121602957	-	Pnap_0039	-	ABC transporter related
39	 65.90	0	40903..41682	-	259	121602958	-	Pnap_0040	-	binding-protein-dependent transport systems inner membrane component
40	 62.34	0	41693..42709	-	338	121602959	-	Pnap_0041	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
41	 66.67	0	43159..43542	-	127	121602960	-	Pnap_0042	-	methylglyoxal synthase
42	 61.47	0	43586..44605	-	339	121602961	-	Pnap_0043	-	TRAP dicarboxylate transporter, DctP subunit
43	 65.04	0	44646..45938	-	430	121602962	-	Pnap_0044	-	TRAP dicarboxylate transporter, DctM subunit
44	 66.08	0	45944..46456	-	170	121602963	-	Pnap_0045	-	tripartite ATP-independent periplasmic transporter DctQ
45	 69.02	+1	46453..46962	-	169	121602964	-	Pnap_0046	-	carbohydrate kinase
46	 71.06	+1	47101..48171	+	356	121602965	-	Pnap_0047	-	periplasmic binding protein/LacI transcriptional regulator
47	 62.26	0	48364..48840	+	158	121602966	-	Pnap_0048	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
48	 65.91	0	48852..50699	+	615	121602967	-	Pnap_0049	-	aldehyde ferredoxin oxidoreductase
49	 66.74	0	50775..52064	+	429	121602968	-	Pnap_0050	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
50	 65.10	0	52061..52315	+	84	121602969	-	Pnap_0051	-	thiamineS protein
51	 71.33	+1	52320..52619	+	99	121602970	-	Pnap_0052	-	hypothetical protein
52	 63.73	0	52725..54020	+	431	121602971	-	Pnap_0053	-	acetyl-CoA hydrolase/transferase
53	 62.15	0	54110..55105	+	331	121602972	-	Pnap_0054	-	hypothetical protein
54	 73.99	+2	55153..55944	+	263	121602973	-	Pnap_0055	-	hypothetical protein
55	 67.19	0	56052..58742	-	896	121602974	-	Pnap_0056	-	GCN5-related N-acetyltransferase
56	 65.59	0	58751..59677	-	308	121602975	-	Pnap_0057	-	histone deacetylase superfamily protein
57	 63.57	0	59940..61100	-	386	121602976	-	Pnap_0058	-	hypothetical protein
58	 60.42	0	61169..63475	-	768	121602977	-	Pnap_0059	-	hypothetical protein
59	 66.92	0	63703..64887	-	394	121602978	-	Pnap_0060	-	beta-ketothiolase
60	 59.57	0	65095..65376	+	93	121602979	-	Pnap_0061	-	prevent-host-death family protein
61	 62.14	0	65380..65799	+	139	121602980	-	Pnap_0062	-	hypothetical protein
62	 62.67	0	65801..67804	+	667	121602981	-	Pnap_0063	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
63	 60.51	0	67804..68469	+	221	121602982	-	Pnap_0064	-	methyltransferase GidB
64	 62.04	0	68499..69125	+	208	121602983	-	Pnap_0065	-	lysine exporter protein LysE/YggA
65	 63.53	0	69180..69944	+	254	121602984	-	Pnap_0066	-	cobyrinic acid a,c-diamide synthase
66	 69.61	+1	70070..70612	+	180	121602985	-	Pnap_0067	-	hypothetical protein
67	 65.60	0	70682..71617	+	311	121602986	-	Pnap_0068	-	parB-like partition proteins
68	 67.37	0	71660..73081	-	473	121602987	-	Pnap_0069	-	FAD linked oxidase domain-containing protein
69	 65.82	0	73261..73854	+	197	121602988	-	Pnap_0070	-	ATP--cobalamin adenosyltransferase
70	 65.29	0	73873..74817	-	314	121602989	-	Pnap_0071	-	LysR family transcriptional regulator
71	 44.66	-2	74868..75176	-	102	121602990	-	Pnap_0072	-	hypothetical protein
72	 66.09	0	75670..77220	-	516	121602991	-	Pnap_0073	-	Acetyl-CoA hydrolase
73	 71.58	+1	77560..78861	+	433	121602992	-	Pnap_0074	-	hypothetical protein
74	 62.13	0	78921..79361	+	146	121602993	-	Pnap_0075	-	hypothetical protein
75	 65.03	0	79407..80693	-	428	121602994	-	Pnap_0076	-	uracil-xanthine permease
76	 66.15	0	80771..81925	-	384	121602995	-	Pnap_0077	-	twitching motility protein
77	 61.69	0	82107..82568	+	153	121602996	-	Pnap_0078	-	putative transposase, IS891/IS1136/IS1341
78	 63.36	0	82622..83347	+	241	121602997	-	Pnap_0079	-	IS605 family transposase OrfB
79	 71.24	+1	83455..84699	+	414	121602998	-	Pnap_0080	-	RND family efflux transporter MFP subunit
80	 67.78	0	84719..85981	+	420	121602999	-	Pnap_0081	-	hypothetical protein
81	 52.76	-1	86106..86903	-	265	121603000	-	Pnap_0082	-	hypothetical protein
82	 54.06	-1	87552..87908	+	118	121603001	-	Pnap_0084	-	hypothetical protein
83	 57.01	-1	87914..88234	+	106	121603002	-	Pnap_0085	-	putative transcriptional regulator
84	 69.54	+1	88241..88936	+	231	121603003	-	Pnap_0086	-	ABC transporter related
85	 59.11	0	89356..89646	+	96	121603004	-	Pnap_0087	-	hypothetical protein
86	 62.38	0	89793..90212	-	139	121603005	-	Pnap_0088	-	hypothetical protein
87	 70.36	+1	90501..92018	-	505	121603006	-	Pnap_0089	-	adenylate cyclase
88	 70.23	+1	92109..93173	-	354	121603007	-	Pnap_0090	-	hypothetical protein
89	 64.12	0	93497..96289	+	930	121603008	-	Pnap_0091	-	PAS/PAC sensor hybrid histidine kinase
90	 67.24	0	96335..96853	-	172	121603009	-	Pnap_0092	-	flavin reductase domain-containing protein
91	 64.98	0	96966..97262	-	98	121603010	-	Pnap_0093	-	hypothetical protein
92	 65.72	0	97385..98752	-	455	121603011	-	Pnap_0094	-	D-amino-acid dehydrogenase
93	 67.76	0	98864..99778	+	304	121603012	-	Pnap_0095	-	chromosome replication initiation inhibitor protein
94	 63.47	0	99880..101130	+	416	121603013	-	Pnap_0096	-	extracellular ligand-binding receptor
95	 65.31	0	101249..104923	+	1224	121603014	-	Pnap_0097	-	multi-sensor signal transduction histidine kinase
96	 60.28	0	105043..105465	-	140	121603015	-	Pnap_0098	-	UspA domain-containing protein
97	 66.98	0	105547..106497	-	316	121603016	-	Pnap_0099	-	metallophosphoesterase
98	 67.50	0	106815..107771	-	318	121603017	-	Pnap_0100	-	LysR family transcriptional regulator
99	 63.41	0	107919..108440	+	173	121603018	-	Pnap_0101	-	hypothetical protein
100	 63.46	0	108552..110420	-	622	121603019	-	Pnap_0102	-	phosphoenolpyruvate carboxykinase
62.80	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.