IslandPath Analysis: Chlamydia muridarum Nigg



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.58   STD DEV: 2.58
Chlamydia muridarum Nigg, complete genome - 1..1072950
904 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.12	0	266..1267	+	333	15834626	hemB	TC0001	-	delta-aminolevulinic acid dehydratase
2	 40.77	0	1300..2697	-	465	15834627	-	TC0002	-	Na(+)-translocating NADH-quinone reductase subunit A
3	 37.96	-1	2719..3150	-	143	15834628	-	TC0003	-	hypothetical protein
4	 39.21	0	3266..5410	+	714	15834629	-	TC0004	-	fused transcript cleavage factor/uncharacterized domain-containing protein
5	 40.65	0	5599..6801	+	400	15834630	-	TC0005	-	aromatic amino acid aminotransferase
6	 40.37	0	6749..7786	+	345	15834631	-	TC0006	-	hypothetical protein
7	 37.81	-1	7797..10877	-	1026	15834632	-	TC0007	-	exodeoxyribonuclease V, beta chain, putative
8	 39.31	0	10885..13962	-	1025	15834633	-	TC0008	-	exodeoxyribonuclease V, gamma subunit, putative
9	 39.70	0	13912..15591	+	559	15834634	-	TC0009	-	hypothetical protein
10	 40.47	0	15620..16432	-	270	15834635	-	TC0010	-	hypothetical protein
11	 33.99	-2	17102..17404	-	100	15834636	-	TC0011	-	hypothetical protein
12	 39.80	0	17361..19958	+	865	15834637	topA	TC0012	-	fused DNA topoisomerase I/SWI domain-containing protein
13	 44.08	+1	19985..20989	-	334	15834638	-	TC0013	-	NifR3/Smm1 family protein
14	 38.05	0	20968..21264	-	98	15834639	-	TC0014	-	hypothetical protein
15	 41.01	0	21367..22746	+	459	15834640	-	TC0015	-	hypothetical protein
16	 43.70	+1	22747..23325	+	192	15834641	-	TC0016	-	hypothetical protein
17	 40.78	0	23316..24590	+	424	15834642	-	TC0017	-	hypothetical protein
18	 44.51	+1	24593..25129	+	178	15834643	-	TC0018	-	5-formyltetrahydrofolate cyclo-ligase, putative
19	 43.94	+1	25348..26412	+	354	15834644	recA	TC0019	-	recombinase A
20	 37.81	-1	26684..28513	+	609	15834645	-	TC0020	-	hypothetical protein
21	 40.56	0	28506..29999	+	497	15834646	-	TC0021	-	exodeoxyribonuclease V, alpha subunit, putative
22	 43.33	+1	30065..30244	+	59	15834647	-	TC0022	-	hypothetical protein
23	 40.14	0	30323..31042	-	239	15834648	-	TC0023	-	ABC transporter, ATP-binding protein
24	 39.67	0	31049..31537	-	162	15834649	-	TC0024	-	hypothetical protein
25	 41.11	0	31534..32343	-	269	15834650	kdsA	TC0025	-	2-dehydro-3-deoxyphosphooctonate aldolase
26	 46.60	+2	32584..32907	+	107	15834651	-	TC0026	-	hypothetical protein
27	 47.57	+2	32801..33088	+	95	15834652	-	TC0027	-	hypothetical protein
28	 39.31	0	33098..33415	+	105	15834653	-	TC0028	-	hypothetical protein
29	 41.77	0	34594..34830	+	78	15834655	-	TC0030	-	hypothetical protein
30	 39.78	0	34919..36391	-	490	15834656	gyrA-1	TC0031	-	DNA topoisomerase IV subunit A
31	 38.78	0	36406..38223	-	605	15834657	gyrB-1	TC0032	-	DNA topoisomerase IV subunit B
32	 43.71	+1	38542..39543	+	333	15834658	hemA	TC0033	-	glutamyl-tRNA reductase
33	 44.53	+1	40220..40621	+	133	15834659	-	TC0034	-	hypothetical protein
34	 41.62	0	40625..43099	+	824	15834660	-	TC0035	-	hypothetical protein
35	 37.65	-1	43144..43398	+	84	15834661	-	TC0036	-	hypothetical protein
36	 39.76	0	43425..43673	+	82	15834662	-	TC0037	-	hypothetical protein
37	 37.56	-1	43699..44148	+	149	15834663	-	TC0038	-	hypothetical protein
38	 38.77	0	44161..44841	+	226	15834664	-	TC0039	-	hypothetical protein
39	 44.92	+1	44843..46171	+	442	15834665	sctN	TC0040	-	type III secretion system ATPase
40	 39.05	0	46194..46700	+	168	15834666	-	TC0041	-	hypothetical protein
41	 39.55	0	46704..47555	+	283	15834667	-	TC0042	-	hypothetical protein
42	 42.78	0	47565..48686	+	373	15834668	sctQ	TC0043	-	type III secretion system protein
43	 40.95	0	48816..50285	+	489	15834669	-	TC0044	-	serine/threonine-protein kinase
44	 40.32	0	51020..53038	+	672	15834670	sctC	TC0045	-	type III secretion protein SctC
45	 40.06	0	53352..54422	-	356	15834671	-	TC0046	-	ATP:guanido phosphotransferase
46	 39.14	0	54412..54945	-	177	15834672	-	TC0047	-	hypothetical protein
47	 40.19	0	55291..55830	-	179	15834673	frr	TC0048	-	ribosome recycling factor
48	 44.31	+1	55827..56564	-	245	15834674	pyrH	TC0049	-	uridylate kinase
49	 41.81	0	56580..57428	-	282	15834675	tsf	TC0050	-	elongation factor Ts
50	 37.83	-1	57425..58270	-	281	15834676	rpsB	TC0051	-	30S ribosomal protein S2
51	 43.90	+1	58653..59816	-	387	15834677	ompA	TC0052	-	major outer membrane protein, porin
52	 28.83	-2	60279..60389	+	36	15834678	-	TC0053	-	hypothetical protein
53	 41.10	0	60401..63643	+	1080	15834679	-	TC0054	-	penicillin-binding protein, putative
54	 39.38	0	63705..64712	+	335	15834680	-	TC0055	-	type III secretion chaperone, putative
55	 40.01	0	65061..66512	+	483	15834681	-	TC0056	-	cysteine desulfurase activator complex subunit SufB
56	 42.19	0	66515..67282	+	255	15834682	-	TC0057	-	ABC transporter, ATP-binding protein
57	 41.54	0	67286..68467	+	393	15834683	-	TC0058	-	hypothetical protein
58	 42.64	0	68470..69672	+	400	15834684	-	TC0059	-	aminotransferase, class V
59	 41.04	0	69809..70651	+	280	15834685	-	TC0060	-	ParB family chromosome partioning protein
60	 42.50	0	70641..71513	-	290	15834686	-	TC0061	-	peptide ABC transporter, ATP-binding protein
61	 40.79	0	71506..72471	-	321	15834687	-	TC0062	-	peptide ABC transporter, ATP-binding protein
62	 39.85	0	72634..73308	+	224	15834688	-	TC0063	-	hypothetical protein
63	 43.64	+1	73311..74591	+	426	15834689	-	TC0064	-	phosphate permease family protein
64	 44.55	+1	74721..75932	+	403	15834690	pgk	TC0065	-	phosphoglycerate kinase
65	 43.28	+1	76176..77180	+	334	15834691	-	TC0066	-	hypothetical protein
66	 43.38	+1	77193..78386	+	397	15834692	-	TC0067	-	hypothetical protein
67	 40.29	0	78466..79644	+	392	15834693	-	TC0068	-	hypothetical protein
68	 42.34	0	79650..80282	-	210	15834694	nth	TC0069	-	endonuclease III
69	 41.87	0	80287..81621	-	444	15834695	trmE	TC0070	-	tRNA modification GTPase TrmE
70	 33.33	-2	81723..81842	-	39	15834696	-	TC0071	-	hypothetical protein
71	 41.06	0	81897..82802	+	301	15834697	psd	TC0072	-	phosphatidylserine decarboxylase
72	 42.91	0	82867..84192	+	441	15834698	-	TC0073	-	hypothetical protein
73	 42.59	0	84449..87355	+	968	15834699	secA	TC0074	-	preprotein translocase subunit SecA
74	 39.70	0	87441..87974	-	177	15834700	-	TC0075	-	hypothetical protein
75	 39.99	0	88050..89522	-	490	15834701	engA	TC0076	-	GTP-binding protein EngA
76	 42.82	0	89637..90869	-	410	15834702	-	TC0077	-	poly(A) polymerase family protein
77	 41.51	0	90884..92143	-	419	15834703	clpX	TC0078	-	ATP-dependent protease ATP-binding subunit
78	 44.61	+1	92153..92764	-	203	15834704	clpP	TC0079	-	ATP-dependent Clp protease proteolytic subunit
79	 39.55	0	92932..94233	-	433	15834705	tig	TC0080	-	trigger factor
80	 39.79	0	94564..98109	+	1181	15834706	-	TC0081	-	SNF2 family helicase
81	 43.60	+1	98114..99214	+	366	15834707	mreB	TC0082	-	cell shape-determining protein MreB
82	 45.11	+1	99211..101010	+	599	15834708	pckA	TC0083	-	phosphoenolpyruvate carboxykinase
83	 39.00	0	101121..103430	+	769	15834709	-	TC0084	-	hypothetical protein
84	 40.24	0	103459..104631	+	390	15834710	-	TC0085	-	hypothetical protein
85	 43.21	+1	104689..105711	-	340	15834711	-	TC0086	-	major outer membrane protein, putative
86	 43.38	+1	105847..106851	-	334	15834712	gpsA	TC0087	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
87	 41.74	0	106848..108215	-	455	15834713	-	TC0088	-	UDP-N-acetylglucosamine pyrophosphorylase, putative
88	 33.61	-2	108232..108594	-	120	15834714	-	TC0089	-	hypothetical protein
89	 43.14	0	108587..109891	-	434	15834715	-	TC0090	-	type III secretion system ATPase
90	 40.00	0	109951..110475	-	174	15834716	-	TC0091	-	hypothetical protein
91	 41.34	0	110480..111478	-	332	15834717	-	TC0092	-	type III secretion system protein
92	 41.89	0	111746..112528	-	260	15834718	-	TC0093	-	NifU-related protein
93	 43.90	+1	112525..113679	-	384	15834719	-	TC0094	-	nifS protein, putative
94	 39.35	0	113634..114314	-	226	15834720	gpmA	TC0095	-	phosphoglyceromutase
95	 38.48	0	115433..115957	+	174	15834722	-	TC0097	-	hypothetical protein
96	 40.72	0	115972..116526	+	184	15834723	-	TC0098	-	biotin--protein ligase
97	 41.75	0	116534..117673	-	379	15834724	-	TC0099	-	cell shape-determining protein MrdB, putative
98	 43.33	+1	117718..119697	-	659	15834725	-	TC0100	-	cation transporter E1-E2 family ATPase
99	 41.77	0	119721..120467	-	248	15834726	-	TC0101	-	hypothetical protein
100	 40.95	0	120506..121792	-	428	15834727	serS	TC0102	-	seryl-tRNA synthetase
40.58	MEAN

2.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.