IslandPath Analysis: Bacillus halodurans C-125



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.66   STD DEV: 3.70
Bacillus halodurans C-125, complete genome - 1..4202352
4066 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.22	0	584..1933	+	449	15612564	dnaA	BH0001	-	chromosomal replication initiation protein
2	 39.46	-1	2103..3245	+	380	15612565	dnaN	BH0002	-	DNA polymerase III subunit beta
3	 46.40	0	3429..3650	+	73	15612566	-	BH0003	-	hypothetical protein
4	 44.44	0	3662..4777	+	371	15612567	recF	BH0004	-	recombination protein F
5	 41.11	0	4788..5057	+	89	15612568	-	BH0005	-	hypothetical protein
6	 46.19	0	5130..7043	+	637	15612569	gyrB	BH0006	-	DNA gyrase subunit B
7	 45.28	0	7065..9566	+	833	15612570	gyrA	BH0007	-	DNA gyrase subunit A
8	 42.20	0	9763..10845	+	360	15612571	-	BH0008	-	hypothetical protein
9	 38.04	-1	10970..11776	-	268	15612572	-	BH0009	-	hypothetical protein
10	 43.57	0	12114..12533	+	139	15612573	-	BH0010	-	hypothetical protein
11	 40.27	0	12526..12972	+	148	15612574	-	BH0011	-	hypothetical protein
12	 42.94	0	13208..14737	+	509	15612575	-	BH0012	-	hypothetical protein
13	 44.62	0	14738..15490	+	250	15612576	-	BH0013	-	hypothetical protein
14	 44.44	0	15625..17118	+	497	15612577	-	BH0014	-	hypothetical protein
15	 45.70	0	17131..17316	+	61	15612578	-	BH0015	-	hypothetical protein
16	 44.64	0	17321..18169	+	282	15612579	-	BH0016	-	hypothetical protein
17	 44.82	0	18166..21030	+	954	15612580	-	BH0017	-	hypothetical protein
18	 46.46	0	21088..22161	+	357	15612581	-	BH0018	-	hypothetical protein
19	 39.94	-1	28792..29745	-	317	15612582	-	BH0019	-	hypothetical protein
20	 43.48	0	29875..31332	+	485	15612583	guaB	BH0020	-	inositol-5-monophosphate dehydrogenase
21	 45.02	0	31440..32774	+	444	15612584	dacA	BH0021	-	serine-type D-Ala-D-Ala carboxypeptidase
22	 46.93	0	32914..33810	+	298	15612585	-	BH0022	-	pyridoxine biosynthesis protein
23	 47.72	+1	33818..34408	+	196	15612586	-	BH0023	-	glutamine amidotransferase subunit PdxT
24	 46.71	0	34678..35955	+	425	15612587	serS	BH0024	-	seryl-tRNA synthetase
25	 47.07	0	36376..37278	-	300	15612588	-	BH0025	-	acetamidase
26	 46.68	0	37372..39297	-	641	15612589	-	BH0026	-	nucleotidase precursor
27	 46.80	0	39462..40478	-	338	15612590	-	BH0027	-	oligopeptide ABC transporter ATP-binding protein
28	 45.40	0	40459..41502	-	347	15612591	-	BH0028	-	oligopeptide ABC transporter ATP-binding protein
29	 46.03	0	41561..42505	-	314	15612592	-	BH0029	-	oligopeptide ABC transporter (permease)
30	 46.25	0	42524..43429	-	301	15612593	-	BH0030	-	oligopeptide ABC transporter (permease)
31	 44.34	0	43756..45372	+	538	15612594	-	BH0031	-	oligopeptide ABC transporter (oligopeptide-binding protein)
32	 38.64	-1	45754..45885	+	43	15612595	-	BH0032	-	hypothetical protein
33	 48.96	+1	45912..46391	+	159	15612596	-	BH0033	-	Cu binding protein (Mn oxidation)
34	 46.14	0	46908..48602	+	564	15612597	dnaX	BH0034	-	DNA polymerase III gamma and tau subunits
35	 42.63	0	48620..48931	+	103	15612598	-	BH0035	-	hypothetical protein
36	 46.23	0	48944..49540	+	198	15612599	recR	BH0036	-	recombination protein RecR
37	 38.43	-1	49555..49770	+	71	15612600	-	BH0037	-	hypothetical protein
38	 45.65	0	49847..50122	+	91	15612601	bofA	BH0038	-	inhibitor of the pro-sigma K processing machinery
39	 47.97	+1	56938..58194	+	418	15612602	-	BH0039	-	transposase (11)
40	 41.29	0	58781..58981	+	66	15612603	csfB	BH0040	-	sigma-F transcribed protein
41	 47.34	0	59286..60734	+	482	15612604	-	BH0041	-	lysine decarboxylase
42	 45.81	0	60731..61363	+	210	15612605	tmk	BH0042	-	thymidylate kinase
43	 42.73	0	61382..61711	+	109	15612606	-	BH0043	-	hypothetical protein
44	 45.19	0	61728..62714	+	328	15612607	holB	BH0044	-	DNA polymerase III subunit delta'
45	 44.44	0	62719..63546	+	275	15612608	-	BH0045	-	signal peptidase-like protein
46	 42.17	0	63562..63912	+	116	15612609	-	BH0046	-	DNA replication intiation control protein YabA
47	 44.94	0	63977..64717	+	246	15612610	-	BH0047	-	hypothetical protein
48	 44.91	0	64714..64998	+	94	15612611	-	BH0048	-	hypothetical protein
49	 47.70	+1	64967..65836	+	289	15612612	-	BH0049	-	hypothetical protein
50	 37.80	-1	65879..66169	-	96	15612613	abrB	BH0050	-	transcriptional pleiotropic regulator of transition state genes
51	 43.50	0	66365..67318	+	317	15612614	-	BH0051	-	hypothetical protein
52	 47.79	+1	67343..69175	+	610	15612615	-	BH0052	-	hypothetical protein
53	 44.38	0	69594..71576	+	660	15612616	metS	BH0053	-	methionyl-tRNA synthetase
54	 46.55	0	71741..72451	+	236	15612617	-	BH0054	-	hypothetical protein
55	 44.76	0	72723..73973	+	416	15612618	-	BH0055	-	hypothetical protein
56	 48.21	+1	74135..74692	+	185	15612619	-	BH0056	-	hypothetical protein
57	 46.32	0	74689..75558	+	289	15612620	ksgA	BH0057	-	dimethyladenosine transferase
58	 43.61	0	75613..76488	+	291	15612621	-	BH0058	-	hypothetical protein
59	 44.19	0	76895..77161	+	88	15612622	-	BH0059	-	hypothetical protein
60	 46.77	0	77286..77471	+	61	15612623	sspF	BH0060	-	small acid-soluble spore protein (minor alpha/beta-type SASP)
61	 47.45	+1	77678..78541	+	287	15612624	-	BH0061	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
62	 45.58	0	78601..79449	+	282	15612625	purR	BH0062	-	purine operon repressor
63	 42.93	0	79446..79820	+	124	15612626	-	BH0063	-	translation initiation inhibitor
64	 45.58	0	80114..80407	+	97	15612627	spoVG	BH0064	-	regulatory protein SpoVG
65	 45.39	0	80675..82042	+	455	15612628	gcaD	BH0065	-	UDP-N-acetylglucosamine pyrophosphorylase
66	 43.85	0	82067..83017	+	316	15612629	prs	BH0066	-	ribose-phosphate pyrophosphokinase
67	 45.52	0	83118..83765	+	215	15612630	ctc	BH0067	-	50S ribosomal protein L25/general stress protein Ctc
68	 46.42	0	83931..84488	+	185	15612631	spoVC	BH0068	-	peptidyl-tRNA hydrolase
69	 44.59	0	85041..88586	+	1181	15612632	mfd	BH0069	-	transcription-repair coupling factor (TRCF)
70	 44.81	0	88747..89286	+	179	15612633	spoVT	BH0070	-	stage V sporulation protein T
71	 48.06	+1	89424..91025	+	533	15612634	-	BH0071	-	hypothetical protein
72	 46.07	0	91046..92521	+	491	15612635	-	BH0072	-	hypothetical protein
73	 37.83	-1	92524..92790	+	88	15612636	-	BH0073	-	hypothetical protein
74	 43.59	0	92968..93279	+	103	15612637	-	BH0074	-	hypothetical protein
75	 40.03	0	93276..93872	+	198	15612638	-	BH0075	-	hypothetical protein
76	 39.37	-1	93878..94258	+	126	15612639	divIC	BH0076	-	cell-division initiation protein (septum formation)
77	 48.07	+1	94333..94746	+	137	15612640	-	BH0077	-	hypothetical protein
78	 44.69	0	95376..97868	+	830	15612641	spoIIE	BH0078	-	stage II sporulation protein E
79	 41.70	0	98027..98767	+	246	15612642	-	BH0079	-	hypothetical protein
80	 45.83	0	98730..99713	+	327	15612643	-	BH0080	-	serine/threonine-protein kinase
81	 46.03	0	99747..100502	+	251	15612644	-	BH0081	-	hypothetical protein
82	 48.12	+1	100518..100970	+	150	15612645	-	BH0082	-	hypothetical protein
83	 45.14	0	100951..102339	+	462	15612646	-	BH0083	-	cell-cycle protein
84	 42.04	0	102378..102917	+	179	15612647	hprT	BH0084	-	hypoxanthine-guanine phosphoribosyltransferase
85	 45.74	0	102986..104959	+	657	15612648	ftsH	BH0085	-	cell-division protein (ATP-dependent Zn metallopeptidase)
86	 41.44	0	105179..105943	+	254	15612649	-	BH0086	-	pantothenate kinase
87	 48.74	+1	105959..106834	+	291	15612650	-	BH0087	-	hypothetical protein
88	 45.35	0	107007..107930	+	307	15612651	cysK	BH0088	-	cysteine synthase A
89	 47.95	+1	108136..109353	+	405	15612652	-	BH0089	-	transposase (01)
90	 46.75	0	109552..111012	+	486	15612653	pabB	BH0090	-	para-aminobenzoate synthase component I
91	 46.23	0	111031..111627	+	198	15612654	pabA	BH0091	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
92	 45.16	0	111611..112498	+	295	15612655	pabC	BH0092	-	4-amino-4-deoxychorismate lyase
93	 46.86	0	112476..113318	+	280	15612656	sul	BH0093	-	dihydropteroate synthase (dihydropteroate pyrophosphorylase)
94	 46.09	0	113326..113670	+	114	15612657	folA	BH0094	-	dihydroneopterin aldolase
95	 44.76	0	113671..114195	+	174	15612658	folK	BH0095	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase
96	 45.95	0	114147..114368	+	73	15612659	-	BH0096	-	hypothetical protein
97	 45.67	0	114382..115386	+	334	15612660	-	BH0097	-	nitrogen regulation transcriptional regulator
98	 44.56	0	115500..117005	+	501	15612661	lysS	BH0098	-	lysyl-tRNA synthetase
99	 47.97	+1	130700..131956	+	418	15612662	-	BH0099	-	transposase (11)
100	 39.49	-1	132792..133262	+	156	15612663	ctsR	BH0100	-	transcriptional repressor of class III stress genes
43.66	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.