IslandPath Analysis: Ralstonia eutropha H16



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 3.95
Ralstonia eutropha H16 chromosome 2, complete sequence - 1..2912490
2555 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.92	-1	1345..2439	+	364	116693961	pA2	H16_B0001	-	replication initiation protein RepA
2	 59.80	-1	2642..2845	-	67	116693962	h16_B0002	H16_B0002	-	cold-shock protein, DNA-binding
3	 63.64	0	3223..3882	+	219	116693963	parA3	H16_B0003	-	chromosome partition protein ParA
4	 65.38	0	3885..4898	+	337	116693964	parB3	H16_B0004	-	chromosome partitioning protein ParB
5	 70.87	0	4950..6518	-	522	116693965	h16_B0005	H16_B0005	-	integrase/recombinase
6	 68.18	0	7033..7893	+	286	116693966	h16_B0006	H16_B0006	-	response regulator
7	 69.05	0	8086..8589	+	167	116693967	h16_B0007	H16_B0007	-	response regulator-like protein
8	 67.30	0	8713..9027	+	104	116693968	h16_B0008	H16_B0008	-	hypothetical protein
9	 61.29	-1	9050..9421	-	123	116693969	h16_B0009	H16_B0009	-	hypothetical protein
10	 67.48	0	9595..10578	+	327	116693970	h16_B0010	H16_B0010	-	hypothetical protein
11	 67.08	0	11088..11810	+	240	116693971	crp2	H16_B0011	-	transcriptional regulator
12	 71.30	+1	11889..14327	+	812	116693972	h16_B0012	H16_B0012	-	EPS I polysaccharide export protein, putative tyrosine-protein kinase
13	 56.75	-2	14501..14752	+	83	116693973	h16_B0013	H16_B0013	-	acyl carrier protein
14	 64.75	0	14749..15948	+	399	116693974	h16_B0014	H16_B0014	-	Acyl-CoA dehydrogenase, short-chain specific
15	 63.88	0	15959..16963	+	334	116693975	serS2	H16_B0015	-	hypothetical protein
16	 64.95	0	17145..19712	+	855	116693976	h16_B0016	H16_B0016	-	putative beta-mannosidase
17	 63.36	0	19793..20821	-	342	116693977	h16_B0017	H16_B0017	-	hypothetical protein
18	 57.97	-2	21110..22225	+	371	116693978	h16_B0018	H16_B0018	-	acyltransferase
19	 61.49	-1	22493..23110	+	205	116693979	h16_B0019	H16_B0019	-	putative UDP-galactose phosphate transferase
20	 60.14	-1	23172..23861	+	229	116693980	h16_B0020	H16_B0020	-	transmembrane protein
21	 62.93	-1	23884..24552	-	222	116693981	h16_B0021	H16_B0021	-	acetyltransferase
22	 63.02	0	24649..26871	-	740	116693982	wzc	H16_B0022	-	protein tyrosin kinase involved in exopolysaccharide biosynthesis
23	 63.25	0	26868..27335	-	155	116693983	wzb	H16_B0023	-	protein-tyrosine phosphatase
24	 61.00	-1	27349..28530	-	393	116693984	wza	H16_B0024	-	exopolysaccharide export protein
25	 65.61	0	28752..29984	-	410	116693985	rfaG2	H16_B0025	-	glycosyl transferase
26	 62.57	-1	30504..31847	+	447	116693986	h16_B0026	H16_B0026	-	hypothetical protein
27	 64.84	0	31935..33464	-	509	116693987	h16_B0027	H16_B0027	-	hypothetical protein
28	 60.45	-1	33714..34967	-	417	116693988	h16_B0028	H16_B0028	-	hypothetical protein
29	 60.83	-1	35347..36459	-	370	116693989	h16_B0029	H16_B0029	-	glycosyl transferase
30	 64.20	0	36669..38129	-	486	116693990	h16_B0030	H16_B0030	-	O-antigen translocase
31	 63.26	0	38126..39241	-	371	116693991	wbpE	H16_B0031	-	aminotransferase
32	 63.23	0	39307..39888	-	193	116693992	wbpD	H16_B0032	-	acetyltransferase
33	 62.99	-1	39896..40846	-	316	116693993	wbpB	H16_B0033	-	lipopolysaccharide biosynthesis protein
34	 59.76	-1	40866..42182	-	438	116693994	wecC	H16_B0034	-	UDP-N-Acetyl-D-mannosamine 6-dehydrogenase
35	 54.79	-2	42260..42697	+	145	116693995	h16_B0035	H16_B0035	-	hypothetical protein
36	 63.98	0	42694..44928	+	744	116693996	h16_B0036	H16_B0036	-	putative exopolysaccharide biosynthesis protein
37	 47.85	-2	45021..46019	-	332	116693997	h16_B0037	H16_B0037	-	hypothetical protein
38	 63.24	0	46219..48258	-	679	116693998	h16_B0038	H16_B0038	-	UDP-N-acetylglucosamine 4,6-dehydratase
39	 64.11	0	48738..49991	+	417	116693999	h16_B0039	H16_B0039	-	EPS aminotransferase protein
40	 66.40	0	49988..50737	+	249	116694000	h16_B0040	H16_B0040	-	membrane-associated phosphatase
41	 69.80	0	51145..52071	-	308	116694001	h16_B0041	H16_B0041	-	glycosyltransferase
42	 68.86	0	52150..53106	-	318	116694002	h16_B0042	H16_B0042	-	response regulator
43	 74.53	+1	53824..54141	-	105	116694003	h16_B0043	H16_B0043	-	hypothetical protein
44	 67.43	0	54142..54534	+	130	116694004	h16_B0044	H16_B0044	-	hypothetical protein
45	 68.33	0	54639..54938	+	99	116694005	h16_B0045	H16_B0045	-	hypothetical protein
46	 65.77	0	55027..55470	+	147	116694006	cynS	H16_B0046	-	cyanate hydratase
47	 75.43	+2	55464..56696	-	410	116694007	cynX	H16_B0047	-	MFS transporter
48	 73.74	+1	56689..57126	-	145	116694008	h16_B0048	H16_B0048	-	putative cytosine/adenosine deaminase
49	 73.53	+1	57324..58226	+	300	116694009	h16_B0049	H16_B0049	-	LysR family transcriptional regulator
50	 75.14	+2	58690..59385	+	231	116694010	h16_B0050	H16_B0050	-	phosphoribosyltransferase
51	 73.37	+1	59393..59899	-	168	116694011	leuD4	H16_B0051	-	3-isopropylmalate dehydratase small subunit
52	 73.12	+1	59947..61233	-	428	116694012	leuC4	H16_B0052	-	3-isopropylmalate dehydratase large subunit
53	 70.32	0	61230..62270	-	346	116694013	h16_B0053	H16_B0053	-	extra-cytoplasmic solute receptor
54	 69.59	0	62381..63166	-	261	116694014	h16_B0054	H16_B0054	-	GntR family transcriptional regulator
55	 69.24	0	63891..65405	+	504	116694015	h16_B0055	H16_B0055	-	hypothetical protein
56	 64.37	0	65591..66025	+	144	116694016	h16_B0056	H16_B0056	-	periplasmic protein
57	 63.52	0	66022..66720	+	232	116694017	h16_B0057	H16_B0057	-	putative double-glycine peptidase
58	 68.09	0	66731..67576	+	281	116694018	h16_B0058	H16_B0058	-	flagellin-like periplasmic protein
59	 66.32	0	67653..69092	+	479	116694019	h16_B0059	H16_B0059	-	putative periplasmic protein
60	 66.86	0	69307..69819	+	170	116694020	h16_B0060	H16_B0060	-	hypothetical protein
61	 68.07	0	70092..71228	+	378	116694021	h16_B0061	H16_B0061	-	ABC-type transporter, periplasmic component
62	 73.11	+1	71266..72057	+	263	116694022	h16_B0062	H16_B0062	-	gluconate 5-dehydrogenase
63	 72.30	+1	72116..73021	-	301	116694023	h16_B0063	H16_B0063	-	LysR family transcriptional regulator
64	 71.66	+1	73134..74495	+	453	116694024	h16_B0064	H16_B0064	-	hypothetical protein
65	 68.64	0	74509..74862	+	117	116694025	h16_B0065	H16_B0065	-	hypothetical protein
66	 66.87	0	74905..75870	+	321	116694026	h16_B0066	H16_B0066	-	extra-cytoplasmic solute receptor
67	 69.53	0	76057..77103	+	348	116694027	h16_B0067	H16_B0067	-	beta-lactamase superfamily hydrolase
68	 73.33	+1	77200..77964	+	254	116694028	h16_B0068	H16_B0068	-	oxidoreductase
69	 68.21	0	77989..78378	-	129	116694029	h16_B0069	H16_B0069	-	acetyltransferase
70	 67.47	0	78566..80053	+	495	116694030	amn	H16_B0070	-	AMP nucleosidase
71	 74.29	+1	80092..80406	-	104	116694031	h16_B0071	H16_B0071	-	hypothetical protein
72	 64.15	0	80447..81679	-	410	116694032	fmdA1	H16_B0072	-	formamidase
73	 65.94	0	81741..82430	-	229	116694033	h16_B0073	H16_B0073	-	ABC-type transporter
74	 64.11	0	82463..83206	-	247	116694034	h16_B0074	H16_B0074	-	ABC transporter ATPase
75	 66.49	0	83224..84360	-	378	116694035	h16_B0075	H16_B0075	-	ABC transporter permease
76	 67.43	0	84383..85297	-	304	116694036	h16_B0076	H16_B0076	-	ABC transporter permease
77	 63.64	0	85362..86651	-	429	116694037	h16_B0077	H16_B0077	-	ABC transporter periplasmic protein
78	 67.06	0	86882..90217	+	1111	116694038	h16_B0078	H16_B0078	-	signal transduction histidine kinase
79	 68.68	0	90201..91094	+	297	116694039	h16_B0079	H16_B0079	-	response regulator
80	 62.79	-1	91158..91802	-	214	116694040	ompW2	H16_B0080	-	OmpW family porin
81	 67.37	0	92148..93845	-	565	116694041	leuA2	H16_B0081	-	2-isopropylmalate synthase
82	 66.51	0	94479..95786	+	435	116694042	h16_B0082	H16_B0082	-	hypothetical protein
83	 72.96	+1	96164..96481	-	105	116694043	h16_B0083	H16_B0083	-	hypothetical protein
84	 68.82	0	96496..98352	-	618	116694044	h16_B0084	H16_B0084	-	ferrous iron transport protein B
85	 69.50	0	98368..98685	-	105	116694045	h16_B0085	H16_B0085	-	ferrous iron transport protein A
86	 70.36	0	99140..100060	-	306	116694046	h16_B0086	H16_B0086	-	LysR family transcriptional regulator
87	 71.34	+1	100181..101977	+	598	116694047	h16_B0087	H16_B0087	-	Acyl-CoA dehydrogenase
88	 67.59	0	102060..103034	+	324	116694048	h16_B0088	H16_B0088	-	extra-cytoplasmic solute receptor
89	 69.52	0	103055..104176	+	373	116694049	h16_B0089	H16_B0089	-	acyl-CoA transferase/carnitine dehydratase
90	 67.37	0	104250..105950	-	566	116694050	lldP2	H16_B0090	-	L-lactate permease
91	 68.12	0	106045..107490	-	481	116694051	h16_B0091	H16_B0091	-	Iron-sulfur cluster-binding protein
92	 71.94	+1	107487..108188	-	233	116694052	h16_B0092	H16_B0092	-	hypothetical protein
93	 68.97	0	108185..108967	-	260	116694053	h16_B0093	H16_B0093	-	Fe-S oxidoreductase
94	 71.73	+1	109148..109819	+	223	116694054	h16_B0094	H16_B0094	-	GntR family transcriptional regulator
95	 67.34	0	109865..110902	-	345	116694055	h16_B0095	H16_B0095	-	putative permease
96	 69.41	0	111107..112489	+	460	116694056	eutB	H16_B0096	-	ethanolamine ammonia-lyase heavy chain
97	 74.05	+1	112500..113285	+	261	116694057	eutC	H16_B0097	-	ethanolamine ammonia-lyase small subunit
98	 62.03	-1	113385..113858	-	157	116694058	h16_B0098	H16_B0098	-	hypothetical protein
99	 65.91	0	113941..114870	-	309	116694059	h16_B0099	H16_B0099	-	LysR family transcriptional regulator
100	 67.96	0	115102..115488	+	128	116694060	h16_B0100	H16_B0100	-	hypothetical protein
66.96	MEAN

3.95	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.