IslandPath Analysis: Syntrophus aciditrophicus SB



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.97   STD DEV: 5.94
Syntrophus aciditrophicus SB, complete genome - 1..3179300
3168 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.23	0	155..1528	+	457	85857846	-	SYN_02051	-	chromosomal replication initiator protein
2	 49.96	0	1699..2817	+	372	85857847	-	SYN_02050	-	DNA polymerase III, beta chain
3	 52.39	0	2927..5329	+	800	85857848	-	SYN_02049	-	DNA gyrase subunit B
4	 53.68	0	5347..7848	+	833	85857849	-	SYN_02048	-	DNA gyrase subunit A
5	 55.24	0	7851..8270	+	139	85857850	-	SYN_02047	-	putative cytoplasmic protein
6	 59.01	+1	8263..9711	+	482	85857851	-	SYN_02046	-	RTCB protein
7	 46.77	0	10078..10836	+	252	85857852	-	SYN_02045	-	putative cytoplasmic protein
8	 37.30	-2	10861..11616	+	251	85857853	-	SYN_02044	-	hypothetical protein
9	 37.19	-2	11704..12480	+	258	85857854	-	SYN_02043	-	hypothetical protein
10	 39.82	-1	12576..13454	+	292	85857855	-	SYN_02042	-	DNA modification methylase
11	 38.11	-2	13414..14166	+	250	85857856	-	SYN_02041	-	putative cytoplasmic protein
12	 33.33	-2	14250..14501	+	83	85857857	-	SYN_03225	-	putative cytoplasmic protein
13	 60.50	+1	14771..15532	+	253	85857858	-	SYN_02040	-	putative cytoplasmic protein
14	 49.81	0	15647..16162	-	171	85857859	-	SYN_02039	-	peptidyl-prolyl cis-trans isomerase
15	 54.17	0	16357..17508	-	383	85857860	-	SYN_02038	-	hypothetical protein
16	 53.36	0	17505..18158	-	217	85857861	-	SYN_02037	-	sigma factor
17	 58.27	+1	18355..20712	-	785	85857862	-	SYN_02036	-	von Willebrand factor type A domain-containing protein
18	 54.62	0	21043..21930	+	295	85857863	-	SYN_01206	-	alpha/beta fold family hydrolase
19	 51.71	0	22064..22765	-	233	85857864	-	SYN_03226	-	GntR family transcriptional regulator
20	 56.69	0	22960..24102	+	380	85857865	-	SYN_03227	-	succinyl-CoA synthetase beta chain
21	 59.85	+1	24436..24978	+	180	85857866	-	SYN_00001	-	succinyl-CoA synthetase, alpha subunit
22	 50.82	0	24975..25157	-	60	85857867	-	SYN_00002	-	putative cytoplasmic protein
23	 49.62	0	25130..25393	-	87	85857869	-	SYN_03228	-	hypothetical protein
24	 53.49	0	25344..25601	+	85	85857868	-	SYN_00003	-	hypothetical protein
25	 57.97	+1	25827..26654	+	275	85857870	-	SYN_00004	-	putative cytoplasmic protein
26	 58.51	+1	26706..28385	-	559	85857871	-	SYN_00005	-	GTPase dynamin-related
27	 63.08	+2	28578..28772	+	64	85857872	-	SYN_00006	-	putative cytoplasmic protein
28	 60.46	+1	28880..30457	-	525	85857873	-	SYN_00007	-	transcriptional regulator
29	 54.99	0	30918..32321	-	467	85857874	-	SYN_03261	-	putative cytoplasmic protein
30	 56.11	0	32188..34290	-	700	85857875	-	SYN_00008	-	AAA family ATPase
31	 45.10	0	34295..34906	-	203	85857876	-	SYN_00009	-	putative cytoplasmic protein
32	 50.08	0	34900..36093	-	397	85857877	-	SYN_00010	-	ATPase
33	 50.63	0	36116..36832	-	238	85857878	-	SYN_00011	-	adenine-specific DNA methylase containing a Zn-ribbon
34	 51.26	0	36873..37190	-	105	85857879	-	SYN_03262	-	putative cytoplasmic protein
35	 46.87	0	37190..38851	-	553	85857880	-	SYN_00012	-	putative cytoplasmic protein
36	 41.83	-1	39018..39464	-	148	85857881	-	SYN_00014	-	protein translocase subunit
37	 44.99	-1	39454..40002	-	182	85857882	-	SYN_00015	-	transcriptional regulator
38	 40.64	-1	39983..40324	-	113	85857883	-	SYN_00016	-	putative cytoplasmic protein
39	 53.71	0	40382..43963	-	1193	85857884	-	SYN_00017	-	SNF2 family DNA/RNA helicase
40	 44.23	-1	44138..44293	-	51	85857885	-	SYN_00018	-	putative cytoplasmic protein
41	 54.24	0	44429..44959	+	176	85857886	-	SYN_00019	-	cold shock DNA -binding domain-containing protein
42	 56.19	0	45133..46134	-	333	85857887	-	SYN_00020	-	putative cytoplasmic protein
43	 55.56	0	46154..47368	-	404	85857888	-	SYN_00021	-	alcohol dehydrogenase, class IV
44	 60.84	+1	47343..48509	-	388	85857889	-	SYN_00022	-	ABC transporter permease protein
45	 59.07	+1	48506..49663	-	385	85857890	-	SYN_00023	-	ABC transporter permease protein
46	 59.44	+1	49638..50357	-	239	85857891	-	SYN_00024	-	ABC transporter ATP-binding protein
47	 60.00	+1	50373..51617	-	414	85857892	-	SYN_00025	-	hlyD family secretion protein
48	 58.38	+1	51636..52757	-	373	85857893	-	SYN_00026	-	chaperone protein
49	 56.51	0	52916..54550	-	544	85857894	groEL	SYN_00027	-	chaperonin GroEL
50	 52.58	0	54566..54856	-	96	85857895	-	SYN_00028	-	co-chaperonin
51	 48.52	0	55182..55688	-	168	85857896	-	SYN_00029	-	molecular chaperone
52	 49.88	0	55716..56120	-	134	85857897	-	SYN_00030	-	molecular chaperone
53	 50.23	0	56138..56581	-	147	85857898	-	SYN_00031	-	molecular chaperone
54	 53.51	0	56898..58775	-	625	85857899	-	SYN_00032	-	cell wall degradation protein
55	 52.79	0	58776..59438	-	220	85857900	-	SYN_00033	-	hypothetical protein
56	 52.25	0	59594..60037	-	147	85857901	-	SYN_00034	-	response regulator
57	 56.96	+1	60184..61059	+	291	85857902	-	SYN_00035	-	DMT family permease
58	 57.87	+1	61110..62405	-	431	85857903	-	SYN_00036	-	glycosyltransferase
59	 55.35	0	62569..63063	-	164	85857904	-	SYN_00037	-	putative cytoplasmic protein
60	 55.36	0	63222..64583	-	453	85857906	-	SYN_03230	-	Zn-dependent protease with chaperone function
61	 48.39	0	64503..64688	+	61	85857905	-	SYN_03231	-	putative cytoplasmic protein
62	 43.72	-1	64615..64797	+	60	85857907	-	SYN_03232	-	putative cytoplasmic protein
63	 57.92	+1	64776..66353	+	525	85857908	-	SYN_00178	-	superfamily II DNA/RNA helicase
64	 49.02	0	66413..66616	+	67	85857909	-	SYN_00177	-	putative cytoplasmic protein
65	 60.74	+1	66613..68469	+	618	85857910	-	SYN_00176	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
66	 55.71	0	68570..69409	+	279	85857911	-	SYN_00175	-	metal-dependent hydrolase
67	 56.01	0	69415..71262	+	615	85857912	-	SYN_00174	-	signal transduction histidine kinase
68	 59.12	+1	71250..71660	+	136	85857913	-	SYN_00173	-	response regulator receiver domain-containing protein
69	 54.05	0	71702..72034	+	110	85857914	-	SYN_03267	-	putative cytoplasmic protein
70	 56.10	0	72052..72903	+	283	85857915	-	SYN_00171	-	signal transduction protein
71	 59.95	+1	73159..73992	+	277	85857916	dapF	SYN_00169	-	diaminopimelate epimerase
72	 58.44	+1	74014..75180	+	388	85857917	-	SYN_00168	-	aminotransferase, class I and II
73	 58.45	+1	75316..76374	+	352	85857918	-	SYN_00167	-	translation-associated GTPase
74	 53.94	0	76434..78059	+	541	85857919	-	SYN_00166	-	metallo-beta-lactamase protein
75	 57.44	+1	78079..78663	-	194	85857920	-	SYN_00165	-	hypothetical protein
76	 55.32	0	78720..79283	+	187	85857921	-	SYN_00164	-	tRNA-specific adenosine deaminase
77	 51.52	0	79447..79611	+	54	85857922	-	SYN_03270	-	putative cytoplasmic protein
78	 59.20	+1	80085..81851	+	588	85857923	-	SYN_00163	-	DNA polymerase III subunit gamma/tau
79	 55.87	0	81936..82250	+	104	85857924	-	SYN_00162	-	hypothetical protein
80	 57.19	+1	82268..82879	+	203	85857925	-	SYN_03272	-	recombination protein
81	 60.47	+1	82905..83759	+	284	85857926	-	SYN_00159	-	fumarate hydratase
82	 59.97	+1	83723..84319	+	198	85857927	-	SYN_00158	-	fumarate hydratase beta subunit
83	 54.21	0	84555..85100	+	181	85857928	-	SYN_00157	-	pyruvate:ferredoxin oxidoreductase gamma subunit
84	 50.58	0	85078..85419	+	113	85857929	-	SYN_00156	-	pyruvate:ferredoxin oxidoreductase delta subunit
85	 56.80	0	85423..86598	+	391	85857930	-	SYN_00155	-	pyruvate:ferredoxin oxidoreductase alpha subunit
86	 53.60	0	86598..87569	+	323	85857931	-	SYN_00154	-	pyruvate:ferredoxin oxidoreductase beta subunit
87	 51.34	0	87554..88075	+	173	85857932	-	SYN_00153	-	NADH:ubiquinone oxidoreductase 24 kD subunit NuoE
88	 56.17	0	88072..89985	+	637	85857933	-	SYN_00152	-	NADH:ubiquinone oxidoreductase, NADH-binding subunit
89	 56.29	0	89997..90719	+	240	85857934	-	SYN_00151	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
90	 55.48	0	91021..91869	-	282	85857935	-	SYN_00150	-	heme export protein apocytochrome heme-lyase
91	 53.62	0	91866..93260	-	464	85857936	-	SYN_00149	-	heme export protein
92	 53.70	0	93591..93752	+	53	85857937	-	SYN_00148	-	hypothetical protein
93	 55.68	0	93771..94826	+	351	85857938	-	SYN_00147	-	putative cytoplasmic protein
94	 58.83	+1	94914..96560	+	548	85857939	-	SYN_00146	-	hypothetical protein
95	 53.67	0	96505..97335	+	276	85857940	-	SYN_00145	-	rhodanese-like domain-containing protein
96	 57.34	+1	97332..99185	+	617	85857941	-	SYN_00144	-	FfdnI cytochrome b subunit of formate dehydrogenase
97	 50.97	0	99531..100454	+	307	85857942	-	SYN_00143	-	rhodanese-related sulfurtransferase
98	 54.17	0	100603..100986	-	127	85857943	-	SYN_00142	-	putative cytoplasmic protein
99	 60.34	+1	100886..102118	-	410	85857944	-	SYN_00141	-	ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
100	 62.07	+1	102045..103808	-	587	85857945	-	SYN_00140	-	aldehyde:ferredoxin oxidoreductase
50.97	MEAN

5.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.