IslandPath Analysis: Acaryochloris marina MBIC11017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.38   STD DEV: 4.45
Acaryochloris marina MBIC11017, complete genome - 1..6503724
6254 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.76	0	1627..2319	-	230	158333234	-	AM1_0003	-	NUDIX hydrolase
2	 50.94	0	2404..3255	+	283	158333235	-	AM1_0004	-	hypothetical protein
3	 49.81	0	3233..4009	+	258	158333236	-	AM1_0005	-	ADP-ribosylglycohydrolase
4	 55.18	+1	4171..6042	+	623	158333237	-	AM1_0006	-	hypothetical protein
5	 53.35	+1	6057..7085	+	342	158333238	-	AM1_0007	-	hypothetical protein
6	 52.31	+1	7272..8051	+	259	158333239	-	AM1_0008	-	hypothetical protein
7	 44.92	0	8126..8617	-	163	158333240	-	AM1_0009	-	CBS domain-containing protein
8	 46.90	0	8664..9083	-	139	158333241	aroH	AM1_0010	-	chorismate mutase
9	 48.30	0	9275..10096	-	273	158333242	sppA	AM1_0011	-	signal peptide peptidase SppA, 36K type
10	 44.20	0	10013..10150	+	45	158333243	-	AM1_0012	-	hypothetical protein
11	 50.75	0	10405..11535	+	376	158333244	-	AM1_0013	-	hypothetical protein
12	 52.12	+1	11542..12792	-	416	158333245	-	AM1_0014	-	uracil-xanthine permease
13	 47.03	0	12895..14004	-	369	158333246	-	AM1_0015	-	hypothetical protein
14	 45.17	0	14131..16395	-	754	158333247	-	AM1_0016	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
15	 47.05	0	16489..18813	-	774	158333248	-	AM1_0017	-	sensor histidine kinase, putative
16	 40.05	-1	18826..19227	-	133	158333249	-	AM1_0018	-	response regulator
17	 48.81	0	19516..20316	+	266	158333250	-	AM1_0019	-	IS4 family transposase
18	 48.94	0	20343..21668	-	441	158333251	-	AM1_0020	-	PhoH family protein
19	 46.32	0	21929..22390	-	153	158333252	-	AM1_0021	-	hypothetical protein
20	 49.12	0	22537..25671	-	1044	158333253	-	AM1_0022	-	WD repeat-containing protein
21	 44.90	0	25697..27079	-	460	158333254	-	AM1_0023	-	TPR domain-containing protein
22	 50.59	0	27421..28359	-	312	158333255	-	AM1_0024	-	nol1/nop2/sun family protein
23	 48.01	0	28533..29159	+	208	158333256	-	AM1_0025	-	hypothetical protein
24	 49.40	0	29423..30424	+	333	158333257	-	AM1_0028	-	PfkB family kinase
25	 50.10	0	30398..30874	-	158	158333258	-	AM1_0027	-	hypothetical protein
26	 46.20	0	30977..31660	+	227	158333259	-	AM1_0029	-	LuxR family transcriptional regulator
27	 49.10	0	31872..33323	+	483	158333260	-	AM1_0030	-	pentapeptide repeat-containing protein
28	 49.22	0	33359..34762	-	467	158333261	pao	AM1_0031	-	pheophorbide A oxygenase
29	 32.31	-2	35158..35352	+	64	158333262	-	AM1_0032	-	hypothetical protein
30	 44.77	0	35374..35880	-	168	158333263	-	AM1_0033	-	HAD superfamily hydrolase
31	 47.87	0	35904..37004	-	366	158333264	-	AM1_0034	-	periplasmic solute-binding protein, putative
32	 44.32	0	37033..37587	-	184	158333265	-	AM1_0035	-	hypothetical protein
33	 48.28	0	37712..38146	-	144	158333266	-	AM1_0036	-	Holliday junction resolvase-like protein
34	 48.89	0	38152..39366	-	404	158333267	-	AM1_0037	-	acetyltransferase
35	 50.64	0	39603..40769	-	388	158333268	-	AM1_0038	-	hypothetical protein
36	 39.53	-1	40992..41120	-	42	158333269	-	AM1_0039	-	hypothetical protein
37	 46.57	0	41419..43209	-	596	158333270	-	AM1_0040	-	carbohydrate porin
38	 36.11	-2	43400..43543	-	47	158333271	-	AM1_0041	-	hypothetical protein
39	 37.95	-2	43917..44111	+	64	158333272	-	AM1_0042	-	hypothetical protein
40	 50.45	0	44143..44808	+	221	158333273	nblB	AM1_0043	-	HEAT repeat-containing PBS lyase
41	 49.85	0	44798..45481	+	227	158333274	-	AM1_0044	-	short-chain dehydrogenase/reductase SDR
42	 37.78	-2	45530..45799	+	89	158333275	-	AM1_0045	-	hypothetical protein
43	 44.99	0	45878..46366	+	162	158333276	-	AM1_0046	-	ATP binding protein, putative
44	 46.59	0	46449..46976	+	175	158333277	-	AM1_0047	-	hypothetical protein
45	 45.70	0	47266..49698	+	810	158333278	-	AM1_0048	-	GAF domain-containing protein
46	 50.59	0	49791..50555	-	254	158333279	-	AM1_0049	-	nucleoside-diphosphate-sugar epimerase, putative
47	 45.33	0	50687..50986	-	99	158333280	-	AM1_0050	-	hypothetical protein
48	 42.65	-1	51179..51940	-	253	158333281	-	AM1_0051	-	hypothetical protein
49	 48.48	0	52360..52623	-	87	158333282	-	AM1_0052	-	hypothetical protein
50	 47.06	0	52907..53416	+	169	158333283	-	AM1_0053	-	hypothetical protein
51	 48.77	0	53429..54646	-	405	158333284	-	AM1_0054	-	hypothetical protein
52	 46.41	0	54650..55873	-	407	158333285	-	AM1_0055	-	leucine-rich repeat-containing protein
53	 49.17	0	55937..56479	-	180	158333286	-	AM1_0056	-	hypothetical protein
54	 37.72	-2	56549..56662	+	37	158333287	-	AM1_0057	-	hypothetical protein
55	 46.55	0	56869..57216	+	115	158333288	-	AM1_0058	-	hypothetical protein
56	 50.92	0	57306..57686	+	126	158333289	-	AM1_0059	-	hypothetical protein
57	 48.39	0	57742..58671	+	309	158333290	-	AM1_0060	-	IS4 family transposase
58	 46.41	0	59103..59408	+	101	158333291	-	AM1_0061	-	transposase
59	 48.83	0	59402..60259	+	285	158333292	-	AM1_0062	-	integrase, catalytic region
60	 54.61	+1	60296..60436	-	46	158333293	-	AM1_0063	-	hypothetical protein
61	 48.76	0	61041..62291	-	416	158333294	-	AM1_0064	-	transposase mutator family protein
62	 44.03	0	62478..62795	-	105	158333295	-	AM1_0065	-	cupin family protein
63	 49.02	0	62815..63222	-	135	158333296	-	AM1_0066	-	hypothetical protein
64	 50.50	0	63308..65101	-	597	158333297	typA	AM1_0067	-	GTP-binding protein TypA/BipA
65	 46.83	0	65314..70041	+	1575	158333298	-	AM1_0068	-	two-component hybrid histidine kinase sensor and regulator
66	 46.61	0	70390..71421	+	343	158333299	-	AM1_0069	-	diguanylate cyclase
67	 43.84	0	71535..71972	+	145	158333300	-	AM1_0070	-	hypothetical protein
68	 44.63	0	71990..73042	-	350	158333301	idiA	AM1_0071	-	iron deficiency induced protein A
69	 42.12	-1	73482..73811	+	109	158333302	-	AM1_0072	-	hypothetical protein
70	 46.20	0	73899..75623	-	574	158333303	-	AM1_0073	-	mechanosensitive ion channel, putative
71	 49.18	0	75663..80873	-	1736	158333304	-	AM1_0074	-	hypothetical protein
72	 37.04	-2	81323..83506	+	727	158333305	-	AM1_0075	-	hemagglutination activity domain-containing protein
73	 42.67	-1	83571..83720	+	49	158333306	-	AM1_0076	-	hypothetical protein
74	 48.06	0	83717..84205	+	162	158333307	-	AM1_0077	-	hypothetical protein
75	 42.86	-1	84192..84338	+	48	158333308	-	AM1_0078	-	hypothetical protein
76	 45.28	0	84449..85570	+	373	158333309	corA	AM1_0079	-	magnesium and cobalt transport protein CorA
77	 47.50	0	85674..86513	+	279	158333310	-	AM1_0080	-	hypothetical protein
78	 48.81	0	86654..87454	+	266	158333311	-	AM1_0081	-	IS4 family transposase
79	 46.51	0	87745..88260	+	171	158333312	-	AM1_0082	-	TPR repeat-containing protein
80	 45.82	0	88341..89213	+	290	158333313	-	AM1_0083	-	rhomboid family protein
81	 48.41	0	89647..91185	+	512	158333314	-	AM1_0084	-	phosphoglucomutase/phosphomannomutase family protein
82	 46.32	0	91200..92054	-	284	158333315	secD	AM1_0085	-	protein-export membrane protein SecD, putative
83	 47.11	0	92204..93379	+	391	158333316	-	AM1_0086	-	esterase/lipase/thioesterase, putative
84	 38.46	-2	93457..93573	-	38	158333317	-	AM1_0087	-	hypothetical protein
85	 41.41	-1	93723..95060	+	445	158333318	-	AM1_0088	-	hypothetical protein
86	 45.09	0	95193..95660	+	155	158333319	-	AM1_0089	-	pyridoxamine 5'-phosphate oxidase family protein, N-terminus
87	 50.75	0	95663..97660	-	665	158333320	-	AM1_0090	-	glycogen debranching protein
88	 47.80	0	97763..98467	-	234	158333321	-	AM1_0091	-	carbonic anhydrase
89	 41.33	-1	98427..98576	-	49	158333322	-	AM1_0092	-	hypothetical protein
90	 34.09	-2	98546..98677	+	43	158333323	-	AM1_0093	-	hypothetical protein
91	 46.06	0	98833..98997	+	54	158333324	-	AM1_0094	-	hypothetical protein
92	 45.22	0	99022..100266	-	414	158333325	-	AM1_0095	-	transposase
93	 50.43	0	100520..100636	+	38	158333326	-	AM1_0096	-	hypothetical protein
94	 45.83	0	100633..101184	+	183	158333327	-	AM1_0097	-	hypothetical protein
95	 49.17	0	101177..101296	+	39	158333328	-	AM1_0098	-	hypothetical protein
96	 48.61	0	101485..102453	-	322	158333329	-	AM1_0099	-	hypothetical protein
97	 46.06	0	102580..102744	+	54	158333330	-	AM1_0100	-	hypothetical protein
98	 36.25	-2	103272..103853	-	193	158333331	-	AM1_0101	-	hypothetical protein
99	 48.76	0	104366..105616	+	416	158333332	-	AM1_0102	-	transposase mutator family protein
100	 41.88	-1	105735..105851	-	38	158333333	-	AM1_0103	-	hypothetical protein
47.38	MEAN

4.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.