IslandPath Analysis: Geobacillus kaustophilus HTA426



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.20   STD DEV: 5.97
Geobacillus kaustophilus HTA426, complete genome - 1..3544776
3498 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.12	0	88..1440	+	450	56418536	dnaA	GK0001	-	chromosomal replication initiation protein
2	 49.52	0	1613..2749	+	378	56418537	dnaN	GK0002	-	DNA polymerase III subunit beta
3	 53.15	0	2947..3168	+	73	56418538	-	GK0003	-	hypothetical protein
4	 47.90	0	3180..4298	+	372	56418539	recF	GK0004	-	recombination protein F
5	 52.63	0	4351..6267	+	638	56418540	gyrB	GK0005	-	DNA gyrase subunit B
6	 53.36	0	6418..8874	+	818	56418541	gyrA	GK0006	-	DNA gyrase subunit A
7	 51.40	0	9020..10087	+	355	56418542	-	GK0007	-	hypothetical protein
8	 45.91	-1	15866..16843	-	325	56418543	-	GK0008	-	hypothetical protein
9	 53.72	0	16969..18435	+	488	56418544	-	GK0009	-	inositol-5-monophosphate dehydrogenase
10	 47.09	0	18540..19898	+	452	56418545	-	GK0010	-	serine-type D-Ala-D-Ala carboxypeptidase
11	 58.53	+1	20029..20913	+	294	56418546	-	GK0011	-	pyridoxine biosynthesis protein
12	 58.21	+1	20938..21528	+	196	56418547	-	GK0012	-	glutamine amidotransferase subunit PdxT
13	 54.51	0	21813..23087	+	424	56418548	serS	GK0013	-	seryl-tRNA synthetase
14	 55.32	0	23309..24595	-	428	56418549	-	GK0014	-	spore peptidoglycan hydrolase (N-acetylglucosaminidase)
15	 58.68	+1	24791..26155	+	454	56418550	-	GK0015	-	hypothetical protein
16	 54.02	0	26394..26891	+	165	56418551	-	GK0016	-	hypothetical protein
17	 53.33	0	27312..28991	+	559	56418552	dnaX	GK0017	-	DNA polymerase III subunits gamma and tau
18	 43.12	-1	29015..29341	+	108	56418553	-	GK0018	-	hypothetical protein
19	 53.60	0	29351..29947	+	198	56418554	recR	GK0019	-	recombination protein RecR
20	 48.52	0	29959..30195	+	78	56418555	-	GK0020	-	hypothetical protein
21	 53.79	0	30274..30537	+	87	56418556	-	GK0021	-	inhibitor of the pro-sigma K processing machinery
22	 44.44	-1	36442..36648	+	68	56418557	-	GK0022	-	hypothetical protein
23	 54.04	0	36819..38252	+	477	56418558	-	GK0023	-	lysine decarboxylase
24	 54.42	0	38267..38911	+	214	56418559	-	GK0024	-	thymidylate kinase
25	 53.60	0	38997..39983	+	328	56418560	-	GK0025	-	DNA polymerase III subunit delta'
26	 49.88	0	39998..40825	+	275	56418561	-	GK0026	-	signal peptidase II
27	 43.25	-1	40841..41203	+	120	161551800	-	GK0027	-	DNA replication intiation control protein YabA
28	 50.33	0	41267..42013	+	248	56418563	-	GK0028	-	hypothetical protein
29	 53.51	0	42029..42940	+	303	56418564	-	GK0029	-	hypothetical protein
30	 46.00	-1	42957..43256	-	99	56418565	-	GK0030	-	transition state regulator
31	 51.56	0	43653..45605	+	650	56418566	-	GK0031	-	methionyl-tRNA synthetase (methionine--tRNA ligase)
32	 50.19	0	45742..46512	+	256	56418567	-	GK0032	-	deoxyribonuclease
33	 52.57	0	46713..47918	+	401	56418568	-	GK0033	-	hypothetical protein
34	 58.83	+1	48191..48739	+	182	56418569	-	GK0034	-	hypothetical protein
35	 52.27	0	48732..49613	+	293	56418570	ksgA	GK0035	-	dimethyladenosine transferase
36	 52.00	0	49753..50652	+	299	56418571	-	GK0036	-	hypothetical protein
37	 46.51	0	50835..51092	+	85	56418572	-	GK0037	-	veg protein
38	 57.86	0	51379..51537	+	52	56418573	-	GK0038	-	small acid-soluble spore protein (minor alpha/beta-type SASP)
39	 55.10	0	51760..52632	+	290	56418574	-	GK0039	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
40	 50.61	0	52688..53509	+	273	56418575	-	GK0040	-	purine operon repressor
41	 51.20	0	53553..53927	+	124	56418576	-	GK0041	-	translation initiation inhibitor
42	 54.30	0	54053..54343	+	96	56418577	spoVG	GK0042	-	regulatory protein SpoVG
43	 53.16	0	54476..55852	+	458	56418578	-	GK0043	-	UDP-N-acetylglucosamine pyrophosphorylase
44	 51.58	0	55865..56812	+	315	161551799	prs	GK0044	-	ribose-phosphate pyrophosphokinase
45	 54.03	0	56890..57522	+	210	56418580	rplY	GK0045	-	50S ribosomal protein L25/general stress protein Ctc
46	 52.76	0	57583..58143	+	186	56418581	spoVC	GK0046	-	peptidyl-tRNA hydrolase
47	 46.75	0	58254..58484	+	76	56418582	-	GK0047	-	hypothetical protein
48	 51.67	0	58574..62107	+	1177	56418583	-	GK0048	-	transcription-repair coupling factor
49	 49.53	0	62316..62852	+	178	56418584	spoVT	GK0049	-	stage V sporulation protein T (transcriptional regulator)
50	 58.28	+1	63128..64678	+	516	56418585	-	GK0050	-	amino acid transporter
51	 54.89	0	64685..66145	+	486	56418586	-	GK0051	-	hypothetical protein
52	 51.42	0	66159..66440	+	93	56418587	-	GK0052	-	hypothetical protein
53	 48.01	0	66542..66868	+	108	56418588	-	GK0053	-	hypothetical protein
54	 52.61	0	66865..67497	+	210	56418589	-	GK0054	-	hypothetical protein
55	 48.39	0	67514..67885	+	123	56418590	-	GK0055	-	cell-division initiation protein
56	 52.63	0	68004..68402	+	132	56418591	-	GK0056	-	hypothetical protein
57	 51.59	0	68934..71414	+	826	56418592	spoIIE	GK0057	-	stage II sporulation protein E (serine phosphatase)
58	 55.60	0	71480..72220	+	246	56418593	-	GK0058	-	hypothetical protein
59	 56.92	0	72183..73157	+	324	56418594	-	GK0059	-	serine/threonine protein kinase
60	 55.13	0	73226..74620	+	464	56418595	-	GK0060	-	hypothetical protein
61	 47.08	0	74634..75215	+	193	56418596	-	GK0061	-	hypoxanthine-guanine phosphoribosyltransferase
62	 54.92	0	75273..77171	+	632	56418597	-	GK0062	-	cell-division protein and general stress protein (class III heat-shock)
63	 50.06	0	77299..78075	+	258	56418598	-	GK0063	-	pantothenate kinase
64	 54.66	0	78084..78974	+	296	56418599	hslO	GK0064	-	Hsp33-like chaperonin
65	 56.09	0	79061..79987	+	308	56418600	-	GK0065	-	cysteine synthase(O-acetyl-L-serine sulfhydrylase)
66	 56.40	0	80102..81523	+	473	56418601	-	GK0066	-	para-aminobenzoate synthase component I
67	 51.85	0	81538..82104	+	188	56418602	-	GK0067	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
68	 52.51	0	82110..82985	+	291	56418603	-	GK0068	-	4-amino-4-deoxychorismate lyase
69	 55.63	0	82985..83836	+	283	56418604	-	GK0069	-	dihydropteroate synthase
70	 56.81	0	83844..84188	+	114	56418605	-	GK0070	-	dihydroneopterin aldolase
71	 48.30	0	84189..84716	+	175	56418606	-	GK0071	-	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase)
72	 50.00	0	84668..84889	+	73	56418607	-	GK0072	-	hypothetical protein
73	 51.40	0	84906..85907	+	333	56418608	-	GK0073	-	nitrogen regulation transcriptional regulator
74	 50.98	0	85998..87482	+	494	56418609	lysS	GK0074	-	lysyl-tRNA synthetase
75	 45.45	-1	95070..95531	+	153	56418610	-	GK0075	-	transcriptional regulator
76	 51.00	0	95547..96095	+	182	56418611	-	GK0076	-	hypothetical protein
77	 51.10	0	96101..97192	+	363	56418612	-	GK0077	-	ATP:guanido phosphotransferase
78	 54.05	0	97189..99621	+	810	56418613	-	GK0078	-	ATP-dependent Clp protease ATPase subunit
79	 56.26	0	99699..101072	+	457	56418614	-	GK0079	-	DNA repair protein RadA
80	 48.95	0	101381..102475	+	364	56418615	-	GK0080	-	hypothetical protein
81	 57.79	0	102497..103183	+	228	56418616	ispD	GK0081	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
82	 58.49	+1	103198..103674	+	158	56418617	ispF	GK0082	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
83	 53.09	0	103876..105348	+	490	56418618	-	GK0083	-	glutamyl-tRNA synthetase (glutamate--tRNA ligase)
84	 52.00	0	105717..106391	+	224	56418619	-	GK0084	-	serine O-acetyltransferase
85	 52.53	0	106369..107769	+	466	56418620	cysS	GK0085	-	cysteinyl-tRNA synthetase
86	 55.32	0	107779..108201	+	140	56418621	-	GK0086	-	hypothetical protein
87	 58.94	+1	108201..108938	+	245	56418622	-	GK0087	-	tRNA/rRNA methyltransferase
88	 48.54	0	108942..109454	+	170	56418623	-	GK0088	-	hypothetical protein
89	 48.08	0	109524..110174	+	216	56418624	-	GK0089	-	RNA polymerase factor sigma-70
90	 48.00	0	110267..110416	+	49	56418625	rpmG	GK0090	-	50S ribosomal protein L33
91	 47.31	0	110454..110639	+	61	56418626	secE	GK0091	-	preprotein translocase subunit SecE
92	 46.25	0	110752..111285	+	177	56418627	nusG	GK0092	-	transcription antitermination protein NusG
93	 52.11	0	111520..111945	+	141	56418628	rplK	GK0093	-	50S ribosomal protein L11
94	 52.14	0	112126..112827	+	233	56418629	rplA	GK0094	-	50S ribosomal protein L1
95	 53.69	0	113086..113586	+	166	56418630	rplJ	GK0095	-	50S ribosomal protein L10
96	 49.19	0	113638..114009	+	123	56418631	rplL	GK0096	-	50S ribosomal protein L7/L12
97	 50.76	0	113939..114724	+	261	56418632	-	GK0097	-	hypothetical protein
98	 54.27	0	115138..118710	+	1190	56418633	rpoB	GK0098	-	DNA-directed RNA polymerase subunit beta
99	 55.44	0	118803..122402	+	1199	56418634	rpoC	GK0099	-	DNA-directed RNA polymerase subunit beta'
100	 50.20	0	122537..122785	+	82	56418635	-	GK0100	-	ribosomal protein L7AE family protein
52.20	MEAN

5.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.