IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.95	0	552..2078	+	508	104779317	dnaA	PSEEN0001	-	chromosomal replication initiation protein
2	 60.96	0	2119..3222	+	367	104779318	dnaN	PSEEN0002	-	DNA polymerase III subunit beta
3	 61.50	0	3238..4341	+	367	104779319	recF	PSEEN0003	-	recombination protein F
4	 58.94	-1	4346..6766	+	806	104779320	gyrB	PSEEN0004	-	DNA gyrase subunit B
5	 61.29	0	6840..8141	-	433	104779321	-	PSEEN0005	-	sigma-54 dependent transcriptional regulator
6	 60.45	0	8388..9272	+	294	104779322	-	PSEEN0007	-	metallo-beta-lactamase family protein
7	 64.95	0	9314..10594	+	426	104779323	-	PSEEN0008	-	hypothetical protein
8	 68.50	0	10591..11409	+	272	104779324	-	PSEEN0009	-	hypothetical protein
9	 64.41	0	11398..12285	-	295	104779325	-	PSEEN0010	-	LysR family transcriptional regulator
10	 64.18	0	12538..14187	+	549	104779326	-	PSEEN0012	-	GMC family oxidoreductase
11	 61.11	0	14285..15904	+	539	104779327	-	PSEEN0013	-	major facilitator family transporter
12	 63.94	0	16126..16896	-	256	104779328	hdtS	PSEEN0014	-	N-acylhomoserine lactone synthase
13	 61.93	0	16962..17489	-	175	162139702	-	PSEEN0015	-	D,D-heptose 1,7-bisphosphate phosphatase
14	 65.94	0	17494..19548	-	684	104779330	glyS	PSEEN0016	-	glycyl-tRNA synthetase subunit beta
15	 62.97	0	19545..20492	-	315	104779331	glyQ	PSEEN0017	-	glycyl-tRNA synthetase subunit alpha
16	 62.86	0	20577..21128	+	183	104779332	tag	PSEEN0018	-	3-methyl-adenine DNA glycosylase I, constitutive
17	 64.08	0	21170..22057	+	295	104779333	-	PSEEN0019	-	lipid A biosynthesis lauroyl acyltransferase
18	 64.08	0	22181..22489	-	102	104779334	-	PSEEN0021	-	hypothetical protein
19	 65.43	0	22501..23874	-	457	104779335	trkA	PSEEN0022	-	potassium transporter peripheral membrane component
20	 69.95	+1	23900..25210	-	436	104779336	sun	PSEEN0023	-	ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)
21	 67.63	0	25207..26139	-	310	104779337	fmt	PSEEN0024	-	methionyl-tRNA formyltransferase
22	 61.74	0	26203..26709	-	168	104779338	def	PSEEN0025	-	peptide deformylase
23	 66.67	0	26917..28014	+	365	104779339	-	PSEEN0026	-	Smf protein, DNA processing chain A
24	 66.31	0	28054..28611	+	185	104779340	-	PSEEN0027	-	hypothetical protein
25	 62.50	0	29068..29379	+	103	104779341	-	PSEEN0028	-	hypothetical protein
26	 65.13	0	29477..30454	-	325	104779342	qor	PSEEN0029	-	quinone oxidoreductase, NADPH-dependent
27	 65.57	0	30587..31498	+	303	104779343	hemF	PSEEN0030	-	coproporphyrinogen III oxidase
28	 65.60	0	31503..32348	+	281	104779344	aroE	PSEEN0031	-	shikimate 5-dehydrogenase
29	 66.73	0	32667..34232	-	521	104779345	-	PSEEN0032	-	sulfate transporter
30	 60.93	0	34383..35306	-	307	104779346	-	PSEEN0033	-	glycine betaine-binding protein
31	 65.35	0	35321..36838	-	505	104779347	betC	PSEEN0034	-	choline sulfatase
32	 64.10	0	36948..37844	+	298	104779348	-	PSEEN0035	-	LysR family transcriptional regulator
33	 63.96	0	37975..38307	+	110	104779349	-	PSEEN0036	-	hypothetical protein
34	 67.53	0	38408..39217	-	269	104779350	trpA	PSEEN0037	-	tryptophan synthase subunit alpha
35	 66.50	0	39214..40431	-	405	104779351	trpB	PSEEN0038	-	tryptophan synthase subunit beta
36	 66.78	0	40543..41439	+	298	104779352	trpI	PSEEN0039	-	transcriptional regulator TrpI
37	 65.74	0	41436..41759	-	107	104779353	-	PSEEN0040	-	hypothetical protein
38	 58.80	-1	41877..42092	+	71	104779354	-	PSEEN0041	-	hypothetical protein
39	 63.06	0	42186..42407	+	73	104779355	-	PSEEN0042	-	hypothetical protein
40	 66.87	0	42529..43524	-	331	104779356	-	PSEEN0043	-	luciferase-like monooxygenase
41	 62.82	0	43688..43921	+	77	104779357	-	PSEEN0044	-	hypothetical protein
42	 62.32	0	43996..44409	-	137	104779358	-	PSEEN0045	-	lipoprotein
43	 63.29	0	44465..44878	-	137	104779359	-	PSEEN0046	-	lipoprotein
44	 64.16	0	44967..46085	+	372	104779360	-	PSEEN0047	-	hypothetical protein
45	 62.52	0	46092..46742	-	216	104779361	-	PSEEN0048	-	HAD superfamily hydrolase
46	 64.30	0	46799..47347	-	182	104779362	-	PSEEN0049	-	transferase
47	 66.72	0	47450..49501	+	683	104779363	prlC	PSEEN0050	-	oligopeptidase A
48	 63.08	0	49498..49776	+	92	104779364	-	PSEEN0051	-	hypothetical protein
49	 66.00	0	49978..51033	+	351	104779365	-	PSEEN0052	-	hypothetical protein
50	 64.58	0	51422..52141	+	239	104779366	cynT-2	PSEEN0053	-	carbonic anhydrase
51	 67.45	0	52331..53866	+	511	104779367	-	PSEEN0054	-	sulfate transporter
52	 61.68	0	53942..54583	-	213	104779368	-	PSEEN0055	-	hypothetical protein
53	 62.94	0	54963..56090	+	375	104779369	coxB	PSEEN0056	-	cytochrome c oxidase, subunit II
54	 62.77	0	56122..57711	+	529	104779370	coxA	PSEEN0057	-	cytochrome c oxidase, subunit I
55	 65.41	0	57722..58279	+	185	104779371	-	PSEEN0058	-	cytochrome C oxidase assembly protein
56	 62.27	0	58296..59183	+	295	104779372	-	PSEEN0059	-	cytochrome c oxidase, subunit III
57	 64.22	0	59281..59484	-	67	104779373	-	PSEEN0060	-	hypothetical protein
58	 66.94	0	59547..60290	+	247	104779374	-	PSEEN0061	-	hypothetical protein
59	 67.53	0	60256..60834	+	192	104779375	-	PSEEN0062	-	hypothetical protein
60	 65.36	0	60844..61917	+	357	104779376	-	PSEEN0063	-	cytochrome oxidase assembly protein
61	 65.44	0	61902..62801	+	299	104779377	-	PSEEN0064	-	protoheme IX farnesyltransferase
62	 62.72	0	62798..63430	+	210	104779378	-	PSEEN0065	-	Sco1/SenC family electron transport protein
63	 62.52	0	63585..64355	-	256	104779379	-	PSEEN0066	-	D-methionine-binding lipoprotein MetQ
64	 64.58	0	64420..65091	-	223	104779380	-	PSEEN0067	-	D-methionine ABC transporter MetI, membrane protein
65	 64.88	0	65091..66098	-	335	104779381	-	PSEEN0068	-	D-methionine ABC transporter MetN, ATP-binding protein
66	 66.24	0	66275..66982	-	235	104779382	-	PSEEN0069	-	lipoprotein
67	 68.33	0	67100..67882	-	260	104779383	znuB	PSEEN0070	-	Zinc ABC transporter, permease protein
68	 67.44	0	67875..68648	-	257	104779384	znuC	PSEEN0071	-	Zinc ABC transporter, ATP-binding protein
69	 67.90	0	68645..69130	-	161	104779385	-	PSEEN0072	-	transcriptional repressor of Zn transport system Zur
70	 65.78	0	69197..70102	+	301	104779386	-	PSEEN0073	-	Zinc ABC transporter ZnuA, periplasmic binding protein
71	 64.77	0	70201..71151	-	316	104779387	thrB	PSEEN0074	-	homoserine kinase
72	 57.39	-1	71216..71506	-	96	104779388	-	PSEEN0075	-	hypothetical protein
73	 65.62	0	71569..74337	+	922	104779389	polA	PSEEN0076	-	DNA polymerase I
74	 62.88	0	74744..75376	-	210	104779390	-	PSEEN0078	-	GTPase EngB
75	 59.08	-1	75585..75887	+	100	104779391	-	PSEEN0079	-	cytochrome c-type protein
76	 62.78	0	75919..76536	+	205	104779392	-	PSEEN0080	-	cytochrome c4
77	 60.38	0	76711..77346	+	211	104779393	dsbA	PSEEN0081	-	thiol:disulfide interchange protein, periplasmic, alkali-inducible
78	 66.20	0	77359..78213	+	284	104779394	-	PSEEN0082	-	DNAse I-like hydrolase
79	 65.76	0	78299..80284	+	661	104779395	-	PSEEN0083	-	diguanylate cyclase
80	 64.35	0	80393..81169	+	258	104779396	-	PSEEN0084	-	N-acetylmuramoyl-L-alanine amidase
81	 64.95	0	81260..82888	+	542	104779397	-	PSEEN0085	-	signal transduction protein
82	 67.06	0	82983..84761	-	592	104779398	kinB	PSEEN0086	-	alginate biosynthesis sensor protein KinB
83	 65.48	0	84758..86104	-	448	104779399	algB	PSEEN0087	-	alginate biosynthesis response regulator AlgB
84	 66.32	0	86643..86927	+	94	104779400	-	PSEEN0089	-	hypothetical protein
85	 59.26	-1	86971..87132	+	53	104779401	-	PSEEN0090	-	hypothetical protein
86	 65.82	0	87136..87606	+	156	104779402	-	PSEEN0091	-	hypothetical protein
87	 61.57	0	88337..89671	+	444	104779403	gltP	PSEEN0093	-	glutamate/aspartate:proton symporter
88	 66.91	0	89868..91097	+	409	104779404	-	PSEEN0094	-	hypothetical protein
89	 68.94	+1	91079..91693	-	204	104779405	-	PSEEN0095	-	lipoprotein
90	 65.81	0	91690..92628	-	312	104779406	-	PSEEN0096	-	hypothetical protein
91	 68.94	+1	92632..93423	-	263	104779407	-	PSEEN0097	-	ABC transporter, ATP-binding protein
92	 67.02	0	93420..94544	-	374	104779408	-	PSEEN0098	-	ABC transporter, permease protein
93	 64.61	0	94651..95673	-	340	104779409	-	PSEEN0099	-	hypothetical protein
94	 64.89	0	95809..97212	-	467	104779410	-	PSEEN0100	-	metalloprotease M16 family
95	 65.46	0	97244..98902	-	552	104779411	-	PSEEN0101	-	Na+/Pi cotransporter
96	 60.05	0	99189..99959	-	256	104779412	-	PSEEN0103	-	TerC family efflux transporter,
97	 64.22	0	100032..101339	-	435	104779413	citN	PSEEN0104	-	citrate transporter
98	 64.43	0	101608..102009	+	133	104779414	-	PSEEN0106	-	hypothetical protein
99	 66.72	0	102142..104100	-	652	104779415	-	PSEEN0107	-	hypothetical protein
100	 66.04	0	104097..104417	-	106	104779416	-	PSEEN0108	-	hypothetical protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.