IslandPath Analysis: Methanothermobacter thermautotrophicus str. Delta H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.85   STD DEV: 4.36
Methanothermobacter thermautotrophicus str. Delta H, complete genome - 1..1751377
1873 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.22	0	171..977	+	268	15678032	-	MTH1	-	hypothetical protein
2	 51.78	0	997..2010	+	337	15678033	rpl3p	MTH2	-	50S ribosomal protein L3P
3	 51.76	0	2023..2787	+	254	15678034	rpl4lp	MTH3	-	50S ribosomal protein L4P
4	 43.89	-1	2768..3070	+	100	15678035	-	MTH4	-	ribosomal protein L23a
5	 50.96	0	3093..3818	+	241	15678036	rpl2p	MTH5	-	50S ribosomal protein L2P
6	 47.45	0	3835..4245	+	136	15678037	rps19p	MTH6	-	30S ribosomal protein S19P
7	 51.95	0	4258..4719	+	153	15678038	rpl22p	MTH7	-	50S ribosomal protein L22P
8	 49.42	0	4723..5499	+	258	15678039	rps3p	MTH8	-	30S ribosomal protein S3P
9	 48.21	0	5546..5740	+	64	15678040	-	MTH9	-	ribosomal protein L35
10	 45.10	-1	5753..6058	+	101	15678041	-	MTH10	-	translation initiation factor Sui1
11	 45.74	0	6067..6348	+	93	15678042	-	MTH11	-	hypothetical protein
12	 45.79	0	6359..6679	+	106	15678043	rps17p	MTH12	-	30S ribosomal protein S17P
13	 50.63	0	6681..7079	+	132	15678044	rpl14p	MTH13	-	50S ribosomal protein L14P
14	 47.18	0	7090..7443	+	117	15678045	rpl24p	MTH14	-	50S ribosomal protein L24P
15	 48.83	0	7446..8174	+	242	15678046	-	MTH15	-	30S ribosomal protein S4e
16	 47.93	0	8175..8681	+	168	15678047	rpl5p	MTH16	-	50S ribosomal protein L5P
17	 45.10	-1	8684..8836	+	50	15678048	rps14P	MTH17	-	30S ribosomal protein S14P
18	 45.02	-1	8842..9243	+	133	15678049	rps8p	MTH18	-	30S ribosomal protein S8P
19	 49.81	0	9252..9785	+	177	15678050	rpl6p	MTH19	-	50S ribosomal protein L6P
20	 48.32	0	9799..10125	+	108	15678051	rpl32e	MTH20	-	50S ribosomal protein L32e
21	 48.10	0	10235..10681	+	148	15678052	rpl19e	MTH21	-	50S ribosomal protein L19e
22	 48.36	0	10693..11271	+	192	15678053	rpl18p	MTH22	-	50S ribosomal protein L18P
23	 51.46	0	11268..11918	+	216	15678054	rps5p	MTH23	-	30S ribosomal protein S5P
24	 49.67	0	11931..12389	+	152	15678055	rpl30p	MTH24	-	50S ribosomal protein L30P
25	 54.20	0	12402..12842	+	146	15678056	rpl15p	MTH25	-	50S ribosomal protein L15P
26	 51.71	0	12859..14229	+	456	15678057	-	MTH26	-	preprotein translocase subunit SecY
27	 47.79	0	14222..14809	+	195	15678058	-	MTH27	-	adenylate kinase
28	 47.97	0	14828..15394	+	188	15678059	-	MTH28	-	hypothetical protein
29	 45.32	-1	15413..15679	+	88	15678060	rpl34e	MTH29	-	50S ribosomal protein L34e
30	 52.06	0	15679..16164	+	161	15678061	-	MTH30	-	cytidylate kinase
31	 41.23	-1	16195..16422	+	75	15678062	-	MTH31	-	50S ribosomal protein L14e
32	 55.79	+1	16437..17411	+	324	15678063	-	MTH32	-	H/ACA RNA-protein complex component Cbf5p
33	 44.89	-1	17648..18097	+	149	15678064	rps13p	MTH34	-	30S ribosomal protein S13P
34	 52.71	0	18114..18629	+	171	15678065	rps4p	MTH35	-	30S ribosomal protein S4
35	 52.16	0	18647..19039	+	130	15678066	rps11p	MTH36	-	30S ribosomal protein S11P
36	 50.19	0	19041..19835	+	264	15678067	-	MTH37	-	DNA-directed RNA polymerase subunit D
37	 46.72	0	19839..20204	+	121	15678068	-	MTH38	-	50S ribosomal protein L18e
38	 51.24	0	20206..21054	+	282	15678069	-	MTH39	-	ribosomal protein S16
39	 45.83	0	21113..21280	+	55	15678070	-	MTH40	-	DNA-directed RNA polymerase subunit N
40	 45.70	0	21452..21637	+	61	15678071	-	MTH42	-	DNA-dependent RNA polymerase, subunit K
41	 52.60	0	21689..22939	+	416	15678072	eno	MTH43	-	phosphopyruvate hydratase
42	 47.74	0	22967..23563	+	198	15678073	rps2P	MTH44	-	30S ribosomal protein S2
43	 55.40	+1	23574..24407	+	277	15678074	-	MTH45	-	hypothetical protein
44	 56.36	+1	24423..25334	+	303	15678075	-	MTH46	-	mevalonate kinase
45	 50.69	0	25356..26156	+	266	15678076	-	MTH47	-	hypothetical protein
46	 52.00	0	26230..27279	+	349	15678077	-	MTH48	-	isopentenyl pyrophosphate isomerase
47	 52.62	0	27281..28633	+	450	15678078	-	MTH49	-	hypothetical protein
48	 53.48	0	28630..29607	+	325	15678079	-	MTH50	-	bifunctional short chain isoprenyl diphosphate synthase
49	 57.40	+1	29608..31269	+	553	15678080	gltX	MTH51	-	glutamyl-tRNA synthetase
50	 53.12	0	31459..32691	+	410	15678081	-	MTH52	-	L,L-diaminopimelate aminotransferase
51	 52.14	0	32752..33336	-	194	15678082	-	MTH53	-	hypothetical protein
52	 51.96	0	33431..34069	-	212	15678083	-	MTH54	-	hypothetical protein
53	 47.09	0	34108..35241	-	377	15678084	-	MTH55	-	hypothetical protein
54	 51.00	0	35238..35735	-	165	15678085	-	MTH56	-	hypothetical protein
55	 38.54	-2	35825..36208	-	127	15678086	-	MTH57	-	hypothetical protein
56	 53.88	0	36384..36641	-	85	15678087	-	MTH58	-	hypothetical protein
57	 53.09	0	36638..37219	-	193	15678088	-	MTH59	-	hypothetical protein
58	 46.14	0	37308..37838	-	176	15678089	-	MTH60	-	hypothetical protein
59	 50.82	0	38015..38500	-	161	15678090	-	MTH61	-	hypothetical protein
60	 52.46	0	38584..39336	-	250	15678091	-	MTH62	-	molybdenum cofactor biosynthesis A (MoaA) related protein
61	 42.90	-1	39469..39813	-	114	15678092	-	MTH63	-	hypothetical protein
62	 35.13	-2	40384..40662	-	92	15678093	-	MTH64	-	hypothetical protein
63	 38.54	-2	40646..41029	-	127	15678094	-	MTH65	-	hypothetical protein
64	 41.44	-1	41052..41273	-	73	15678095	-	MTH66	-	hypothetical protein
65	 37.70	-2	41393..41575	-	60	15678096	-	MTH67	-	hypothetical protein
66	 37.99	-2	41517..42203	-	228	15679902	-	MTH68	-	TPR repeat-containing protein
67	 34.11	-2	42385..42642	-	85	15678097	-	MTH69	-	hypothetical protein
68	 36.02	-2	42661..42846	-	61	15678098	-	MTH70	-	hypothetical protein
69	 40.45	-2	42843..43109	-	88	15678099	-	MTH71	-	hypothetical protein
70	 39.60	-2	43227..44438	-	403	15678100	-	MTH72	-	O-linked GlcNAc transferase
71	 45.43	-1	44435..45385	-	316	15678101	-	MTH73	-	hypothetical protein
72	 38.04	-2	45402..45677	-	91	15678102	-	MTH74	-	hypothetical protein
73	 43.64	-1	45658..48171	-	837	15678103	-	MTH75	-	surface protease related protein
74	 40.16	-2	48369..48749	-	126	15678104	-	MTH76	-	hypothetical protein
75	 38.73	-2	48867..49274	-	135	15678105	-	MTH77	-	hypothetical protein
76	 33.74	-2	49405..49647	-	80	15678106	-	MTH78	-	hypothetical protein
77	 37.70	-2	49661..50164	-	167	15678107	-	MTH79	-	hypothetical protein
78	 34.96	-2	50180..50425	-	81	15678108	-	MTH80	-	hypothetical protein
79	 39.38	-2	50538..51182	-	214	15678109	-	MTH81	-	hypothetical protein
80	 37.70	-2	51302..51484	-	60	15678110	-	MTH82	-	hypothetical protein
81	 38.68	-2	51426..52565	-	379	15678111	-	MTH83	-	O-linked GlcNAc transferase
82	 42.95	-1	52562..53164	-	200	15678112	-	MTH84	-	hypothetical protein
83	 32.54	-2	53284..53409	+	41	15678113	-	MTH85	-	hypothetical protein
84	 35.73	-2	53629..54045	-	138	15678114	-	MTH86	-	hypothetical protein
85	 44.00	-1	54150..56672	-	840	15678115	-	MTH87	-	surface protease related protein
86	 29.63	-2	56672..56779	-	35	15678116	-	MTH88	-	hypothetical protein
87	 36.67	-2	56940..57119	-	59	15678117	-	MTH89	-	hypothetical protein
88	 26.46	-2	57204..57596	-	130	15678118	-	MTH90	-	hypothetical protein
89	 42.54	-1	57581..57808	-	75	15678119	-	MTH91	-	hypothetical protein
90	 42.72	-1	57999..58211	-	70	15678120	-	MTH92	-	hypothetical protein
91	 39.30	-2	58390..58758	-	122	15678121	-	MTH93	-	hypothetical protein
92	 46.89	0	58795..59067	-	90	15678122	-	MTH94	-	hypothetical protein
93	 42.76	-1	59128..59583	-	151	15678123	-	MTH95	-	hypothetical protein
94	 43.33	-1	59620..60189	-	189	15678124	-	MTH96	-	hypothetical protein
95	 50.18	0	60246..60524	-	92	15678125	-	MTH97	-	hypothetical protein
96	 42.86	-1	60818..60943	-	41	15678126	-	MTH98	-	hypothetical protein
97	 41.11	-2	61183..61362	-	59	15678127	-	MTH99	-	hypothetical protein
98	 48.72	0	61443..61754	-	103	15678128	-	MTH100	-	hypothetical protein
99	 49.87	0	61986..63485	+	499	15678129	-	MTH101	-	hypothetical protein
100	 52.87	0	63467..63727	+	86	15678130	-	MTH102	-	hypothetical protein
49.85	MEAN

4.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.