IslandPath Analysis: Mannheimia succiniciproducens MBEL55E



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.00   STD DEV: 5.13
Mannheimia succiniciproducens MBEL55E, complete genome - 1..2314078
2369 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.89	0	3770..4135	+	121	52424056	-	MS0001	-	hypothetical protein
2	 34.41	-1	4397..4489	-	30	52424057	-	MS0002	-	hypothetical protein
3	 40.55	0	4475..5167	+	230	52424058	sapB	MS0003	-	SapB protein
4	 38.70	0	5202..6152	-	316	52424059	pldB	MS0004	-	PldB protein
5	 29.46	-2	6182..6310	+	42	52424060	-	MS0005	-	hypothetical protein
6	 46.90	0	6315..7427	-	370	52424061	asd	MS0006	-	aspartate-semialdehyde dehydrogenase
7	 41.45	0	7574..8509	-	311	161511015	ftsX	MS0007	-	cell division protein FtsX
8	 45.16	0	8521..9171	-	216	52424063	ftsE	MS0008	-	FtsE protein
9	 38.14	0	9309..9662	-	117	52424064	-	MS0009	-	hypothetical protein
10	 34.75	-1	9735..9875	-	46	52424065	-	MS0010	-	hypothetical protein
11	 46.38	0	9850..10401	-	183	52424066	-	MS0011	-	hypothetical protein
12	 37.58	0	10644..10949	-	101	52424067	-	MS0012	-	hypothetical protein
13	 47.29	+1	11009..12463	-	484	52424068	gnd	MS0013	-	6-phosphogluconate dehydrogenase
14	 40.58	0	12617..13375	-	252	52424069	racX	MS0014	-	RacX protein
15	 46.78	0	13415..14113	-	232	52424070	nagB	MS0015	-	6-phosphogluconolactonase
16	 45.99	0	14202..15686	-	494	52424071	zwf	MS0016	-	glucose-6-phosphate 1-dehydrogenase
17	 43.78	0	15761..16564	-	267	52424072	cysQ	MS0017	-	CysQ protein
18	 45.99	0	16716..18722	-	668	52424073	-	MS0018	-	hypothetical protein
19	 46.38	0	18904..19455	-	183	52424074	nudE	MS0019	-	ADP-ribose diphosphatase NudE
20	 46.61	0	19638..20315	-	225	52424075	ulaD	MS0020	-	3-keto-L-gulonate-6-phosphate decarboxylase
21	 44.02	0	20370..20837	-	155	52424076	ptsN	MS0021	-	PtsN protein
22	 44.98	0	20886..22679	-	597	161511014	ulaA	MS0022	-	ascorbate-specific PTS system enzyme IIC/IIB
23	 42.86	0	23041..24132	+	363	161511013	-	MS0023	-	putative L-ascorbate 6-phosphate lactonase
24	 42.06	0	24206..24973	+	255	52424079	glpR	MS0024	-	transcriptional repressor UlaR
25	 43.23	0	25085..25933	-	282	52424080	rpoD	MS0025	-	RNA polymerase factor sigma-32
26	 45.66	0	26069..27025	-	318	52424081	tehA	MS0026	-	potassium-tellurite ethidium and proflavin transporter
27	 39.68	0	27025..27339	-	104	52424082	-	MS0027	-	hypothetical protein
28	 46.20	0	27354..28379	-	341	52424083	murB	MS0028	-	UDP-N-acetylenolpyruvoylglucosamine reductase
29	 29.52	-2	28425..28529	+	34	52424084	-	MS0029	-	hypothetical protein
30	 44.58	0	28491..29699	-	402	52424085	gltS	MS0030	-	GltS protein
31	 43.91	0	29890..30324	-	144	52424086	dtd	MS0031	-	D-tyrosyl-tRNA deacylase
32	 41.55	0	30321..31184	-	287	52424087	rbn	MS0032	-	ribonuclease BN
33	 45.47	0	31166..31651	-	161	52424088	-	MS0033	-	hypothetical protein
34	 45.58	0	31731..33281	+	516	52424089	-	MS0034	-	hypothetical protein
35	 37.53	0	33356..33808	-	150	52424090	lrp	MS0035	-	DNA-binding transcriptional regulator AsnC
36	 41.29	0	33987..34979	+	330	52424091	asnA	MS0036	-	asparagine synthetase AsnA
37	 32.29	-1	35055..35150	+	31	52424092	-	MS0037	-	hypothetical protein
38	 46.52	0	35237..36556	-	439	52424093	oadB	MS0038	-	OadB protein
39	 46.66	0	36561..38369	-	602	52424094	oadA	MS0039	-	pyruvate carboxylase subunit B
40	 40.45	0	38391..38657	-	88	52424095	oadG	MS0040	-	oxaloacetate decarboxylase subunit gamma
41	 45.45	0	38821..39852	-	343	52424096	smf	MS0041	-	Smf protein
42	 36.48	-1	39825..39983	-	52	52424097	-	MS0042	-	hypothetical protein
43	 27.96	-2	39967..40059	-	30	52424098	-	MS0043	-	hypothetical protein
44	 46.09	0	40049..40942	-	297	161511012	lysR	MS0044	-	DNA-binding transcriptional regulator IlvY
45	 44.06	0	41152..42633	+	493	52424100	ilvC	MS0045	-	ketol-acid reductoisomerase
46	 47.33	+1	42709..43401	-	230	52424101	sgbE	MS0046	-	L-ribulose-5-phosphate 4-epimerase
47	 44.13	0	43395..44255	-	286	52424102	sgaU	MS0047	-	putative L-xylulose 5-phosphate 3-epimerase
48	 46.78	0	44304..45761	-	485	52424103	xylB	MS0048	-	XylB protein
49	 45.45	0	45893..46882	-	329	52424104	dctP	MS0049	-	DctP protein
50	 41.95	0	46947..47933	-	328	52424105	dctP	MS0050	-	DctP protein
51	 45.38	0	48008..49285	-	425	52424106	-	MS0051	-	hypothetical protein
52	 39.54	0	49282..49764	-	160	52424107	-	MS0052	-	hypothetical protein
53	 41.77	0	49774..50235	-	153	52424108	ebgC	MS0053	-	EbgC protein
54	 45.16	0	50339..51454	-	371	52424109	-	MS0054	-	2,3-diketo-L-gulonate reductase
55	 37.10	0	51479..52300	+	273	52424110	iclR	MS0055	-	IclR protein
56	 45.87	0	52337..53014	+	225	52424111	ulaD	MS0056	-	3-keto-L-gulonate-6-phosphate decarboxylase
57	 47.65	+1	53202..55199	+	665	52424112	tktA	MS0057	-	transketolase
58	 42.94	0	55334..56821	-	495	52424113	araA	MS0058	-	L-arabinose isomerase
59	 46.17	0	56849..58453	-	534	52424114	xylB	MS0059	-	XylB protein
60	 45.45	0	58644..59501	-	285	52424115	araC	MS0060	-	DNA-binding transcriptional regulator AraC
61	 44.41	0	59513..60487	-	324	52424116	araH	MS0061	-	L-arabinose transporter permease protein
62	 42.08	0	60484..61992	-	502	52424117	araG	MS0062	-	L-arabinose transporter ATP-binding protein
63	 44.87	0	62050..63063	-	337	52424118	rbsB	MS0063	-	RbsB protein
64	 43.48	0	63297..65267	-	656	52424119	cpdB	MS0064	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
65	 36.60	-1	65517..66773	+	418	52424120	-	MS0065	-	hypothetical protein
66	 40.62	0	66788..67789	+	333	52424121	pdxA	MS0066	-	4-hydroxythreonine-4-phosphate dehydrogenase
67	 35.84	-1	67808..68686	+	292	52424122	dapA	MS0067	-	DapA protein
68	 37.21	0	68693..69673	+	326	52424123	serA	MS0068	-	SerA protein
69	 36.10	-1	69686..70840	+	384	52424124	eutG	MS0069	-	EutG protein
70	 22.22	-2	70842..70940	+	32	52424125	-	MS0070	-	hypothetical protein
71	 25.79	-2	71026..71529	+	167	52424126	-	MS0071	-	hypothetical protein
72	 35.34	-1	71542..73035	+	497	52424127	-	MS0072	-	hypothetical protein
73	 35.57	-1	73056..74039	+	327	52424128	-	MS0073	-	hypothetical protein
74	 41.40	0	74118..74873	+	251	52424129	glpR	MS0074	-	GlpR protein
75	 39.03	0	75049..75873	-	274	52424130	-	MS0075	-	hypothetical protein
76	 44.19	0	75891..76019	-	42	52424131	-	MS0076	-	hypothetical protein
77	 40.53	0	76020..76505	-	161	52424132	-	MS0077	-	hypothetical protein
78	 44.40	0	76498..77256	-	252	52424133	-	MS0078	-	hypothetical protein
79	 47.70	+1	77268..78158	-	296	52424134	-	MS0079	-	hypothetical protein
80	 46.30	0	78177..78770	-	197	52424135	-	MS0080	-	hypothetical protein
81	 49.18	+1	78748..79845	-	365	52424136	-	MS0081	-	hypothetical protein
82	 43.55	0	79855..80226	-	123	52424137	-	MS0082	-	hypothetical protein
83	 48.60	+1	80272..80808	-	178	52424138	-	MS0083	-	hypothetical protein
84	 43.76	0	80795..81859	-	354	52424139	-	MS0084	-	hypothetical protein
85	 44.02	0	81852..82085	-	77	52424140	-	MS0085	-	hypothetical protein
86	 44.23	0	82063..83007	-	314	52424141	-	MS0086	-	hypothetical protein
87	 49.06	+1	83007..85652	-	881	52424142	-	MS0087	-	hypothetical protein
88	 47.83	+1	85663..86076	+	137	52424143	-	MS0088	-	hypothetical protein
89	 43.94	0	86089..86220	-	43	52424144	-	MS0089	-	hypothetical protein
90	 44.79	0	86238..86621	-	127	52424145	-	MS0090	-	hypothetical protein
91	 46.05	0	86608..87126	-	172	52424146	-	MS0091	-	hypothetical protein
92	 49.53	+1	87140..88534	-	464	52424147	-	MS0092	-	hypothetical protein
93	 48.67	+1	88562..89050	-	162	52424148	-	MS0093	-	hypothetical protein
94	 51.95	+1	89053..89487	-	144	52424149	-	MS0094	-	hypothetical protein
95	 47.26	+1	89487..89723	-	78	52424150	-	MS0095	-	hypothetical protein
96	 47.41	+1	89813..90757	-	314	52424151	-	MS0096	-	hypothetical protein
97	 51.99	+1	90800..91930	-	376	52424152	-	MS0097	-	hypothetical protein
98	 48.92	+1	92137..92598	-	153	52424153	-	MS0098	-	hypothetical protein
99	 44.02	0	92659..92892	+	77	52424154	-	MS0099	-	hypothetical protein
100	 49.22	+1	93157..94434	-	425	52424155	-	MS0100	-	hypothetical protein
42.00	MEAN

5.13	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.