IslandPath Analysis: Lactobacillus johnsonii NCC 533



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.52   STD DEV: 3.16
Lactobacillus johnsonii NCC 533, complete genome - 1..1992676
1821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.63	0	1..1365	+	454	42518085	-	LJ0001	-	chromosomal replication initiator protein DnaA
2	 34.04	0	1546..2676	+	376	42518086	-	LJ0002	-	DNA polymerase III, beta chain
3	 38.67	+1	2951..3100	+	49	42518087	-	LJ0002b	-	hypothetical protein
4	 32.98	0	3104..4228	+	374	42518088	recF	LJ0003	-	recombination protein F
5	 39.43	+1	4229..6196	+	655	42518089	-	LJ0004	-	DNA gyrase subunit B
6	 38.63	+1	6207..8696	+	829	42518090	-	LJ0005	-	DNA gyrase subunit A
7	 35.35	0	8883..9179	+	98	42518091	rpsF	LJ0006	-	30S ribosomal protein S6
8	 40.08	+1	9213..9731	+	172	42518092	-	LJ0007	-	single-strand binding protein
9	 43.46	+2	9756..9992	+	78	42518093	rpsR	LJ0008	-	30S ribosomal protein S18
10	 31.26	-1	10086..11003	+	305	42518094	-	LJ0009	-	hypothetical protein
11	 36.75	0	11110..13128	+	672	42518095	-	LJ0010	-	hypothetical protein
12	 33.55	0	13140..13595	+	151	42518096	rplI	LJ0011	-	50S ribosomal protein L9
13	 37.48	0	13598..14971	+	457	42518097	-	LJ0012	-	replicative DNA helicase
14	 37.97	+1	15069..15953	+	294	42518098	-	LJ0013	-	fructokinase
15	 36.75	0	16017..17159	-	380	42518099	-	LJ0014	-	hypothetical protein
16	 37.05	0	17277..19295	-	672	42518100	-	LJ0015	-	hypothetical protein
17	 34.89	0	19628..20980	-	450	42518101	-	LJ0016	-	hypothetical protein
18	 32.30	0	21517..22680	+	387	42518102	-	LJ0017	-	hypothetical protein
19	 33.33	0	22717..23577	-	286	42518103	-	LJ0018	-	hypothetical protein
20	 35.49	0	23719..24366	+	215	42518104	-	LJ0019	-	hypothetical protein
21	 25.84	-2	24563..25363	-	266	42518105	-	LJ0020	-	hypothetical protein
22	 26.67	-2	25638..26702	+	354	42518106	-	LJ0021	-	hypothetical protein
23	 26.37	-2	26708..27913	+	401	42518107	-	LJ0022	-	major facilitator superfamily permease
24	 36.09	0	28305..28994	-	229	42518108	-	LJ0023	-	hypothetical protein
25	 35.88	0	29130..29837	+	235	42518109	-	LJ0024	-	hypothetical protein
26	 38.45	+1	29872..30711	-	279	42518110	-	LJ0025	-	hypothetical protein
27	 30.47	-1	31207..32814	+	535	42518111	-	LJ0026	-	ABC transporter ATPase and permease components
28	 30.49	-1	32837..33646	-	269	42518112	-	LJ0027	-	hypothetical protein
29	 38.02	+1	33801..35720	+	639	42518113	-	LJ0028	-	hypothetical protein
30	 37.90	+1	35975..37309	-	444	42518114	-	LJ0029	-	hypothetical protein
31	 34.03	0	37838..39571	-	577	42518115	-	LJ0030	-	endopeptidase O
32	 27.57	-2	39672..40538	+	288	42518116	-	LJ0031	-	hypothetical protein
33	 34.04	0	40727..42001	+	424	42518117	-	LJ0032	-	major facilitator superfamily permease
34	 41.81	+2	42139..43164	-	341	42518118	-	LJ0033	-	transposase
35	 31.18	-1	43272..44198	-	308	42518119	-	LJ0034	-	hypothetical protein
36	 35.19	0	44502..44663	+	53	42518120	-	LJ0034b	-	hypothetical protein
37	 44.19	+2	44703..44969	+	88	42518121	-	LJ0035	-	hypothetical protein
38	 36.35	0	45106..45933	+	275	42518122	-	LJ0036	-	exodeoxyribonuclease
39	 34.57	0	46005..48845	+	946	42518123	-	LJ0037	-	hypothetical protein
40	 34.91	0	48935..49441	+	168	42518124	-	LJ0038	-	hypothetical protein
41	 35.21	0	49555..49821	+	88	42518125	-	LJ0039	-	hypothetical protein
42	 33.33	0	49857..50090	-	77	42518126	-	LJ0040	-	hypothetical protein
43	 33.05	0	50221..51270	+	349	42518127	-	LJ0041	-	hypothetical protein
44	 35.96	0	51471..52805	+	444	42518128	-	LJ0042	-	hypothetical protein
45	 40.52	+1	52848..54002	-	384	42518129	-	LJ0043	-	inosine-5-monophosphate dehydrogenase
46	 33.51	0	54076..54651	-	191	42518130	-	LJ0044	-	hypothetical protein
47	 40.83	+1	54728..55741	-	337	42518131	-	LJ0045	-	D-lactate dehydrogenase
48	 33.75	0	55999..58611	+	870	42518132	-	LJ0046	-	hypothetical protein
49	 38.72	+1	59228..65647	+	2139	42518133	-	LJ0047	-	hypothetical protein
50	 35.13	0	65803..68754	+	983	42518134	-	LJ0048	-	hypothetical protein
51	 35.84	0	68742..70337	+	531	42518135	-	LJ0049	-	hypothetical protein
52	 32.04	0	70490..71416	+	308	42518136	-	LJ0050	-	hypothetical protein
53	 38.63	+1	71548..73398	+	616	42518137	-	LJ0051	-	hypothetical protein
54	 36.63	0	73489..74853	+	454	42518138	-	LJ0052	-	branched-chain amino acid transporter
55	 33.74	0	74904..75638	+	244	42518139	ubiE	LJ0053	-	ubiquinone/menaquinone biosynthesis methyltransferase
56	 34.75	0	75671..76585	+	304	42518140	-	LJ0054	-	prolinase PepPN
57	 32.35	0	76704..77315	+	203	42518141	-	LJ0055	-	hypothetical protein
58	 38.59	+1	77465..78415	-	316	42518142	-	LJ0056	-	conjugated bile salt hydrolase
59	 38.20	+1	78431..79786	-	451	42518143	-	LJ0057	-	bile salt transporter
60	 38.04	+1	79810..81168	-	452	42518144	-	LJ0058	-	bile salt transporter
61	 36.24	0	81470..82330	-	286	42518145	-	LJ0059	-	hypothetical protein
62	 35.54	0	82327..83277	-	316	42518146	-	LJ0060	-	hypothetical protein
63	 33.02	0	83290..84240	-	316	42518147	-	LJ0061	-	hypothetical protein
64	 36.48	0	84266..85090	-	274	42518148	-	LJ0062	-	hypothetical protein
65	 35.39	0	85092..85868	-	258	42518149	-	LJ0063	-	hypothetical protein
66	 32.24	0	86234..87511	+	425	42518150	-	LJ0064	-	transposase
67	 36.72	0	87816..88523	+	235	42518151	-	LJ0065	-	two-component regulatory system response regulator
68	 36.90	0	88570..90420	+	616	42518152	-	LJ0066	-	two-component regulatory system histidine kinase
69	 32.43	0	90410..91738	+	442	42518153	-	LJ0067	-	hypothetical protein
70	 32.24	0	91728..92549	+	273	42518154	-	LJ0068	-	hypothetical protein
71	 36.47	0	92555..93352	+	265	42518155	-	LJ0069	-	hypothetical protein
72	 37.35	0	93436..94656	+	406	42518156	-	LJ0070	-	serine protease do-like HtrA
73	 34.79	0	95167..95646	+	159	42518157	-	LJ0071	-	SPOUT methyltransferase superfamily protein
74	 34.40	0	95647..96300	-	217	42518158	-	LJ0072	-	ABC transporter permease component
75	 33.56	0	96312..97658	-	448	42518159	-	LJ0073	-	ABC transporter ATPase component
76	 36.35	0	97633..98196	-	187	42518160	-	LJ0074	-	hypothetical protein
77	 33.01	0	98433..99359	+	308	42518161	-	LJ0075	-	hypothetical protein
78	 39.84	+1	99394..100284	-	296	42518162	-	LJ0076	-	heat shock protein HtpX
79	 33.15	0	100293..100850	-	185	42518163	-	LJ0077	-	LemA-like protein
80	 32.51	0	100966..102060	-	364	42518164	-	LJ0078	-	hypothetical protein
81	 33.09	0	102236..102646	+	136	42518165	-	LJ0079	-	hypothetical protein
82	 33.15	0	103041..103571	+	176	42518166	-	LJ0080	-	hypothetical protein
83	 33.64	0	104036..105343	+	435	42518167	-	LJ0081	-	hypothetical protein
84	 35.38	0	105353..106477	+	374	42518168	-	LJ0082	-	hypothetical protein
85	 32.56	0	106592..107236	+	214	42518169	-	LJ0083	-	hypothetical protein
86	 33.66	0	107238..108167	+	309	42518170	-	LJ0084	-	hypothetical protein
87	 33.71	0	108250..108516	-	88	42518171	-	LJ0085	-	hypothetical protein
88	 35.57	0	108770..109528	-	252	42518172	-	LJ0086	-	ABC transporter ATPase component
89	 35.94	0	109518..111131	-	537	42518173	-	LJ0087	-	ABC transporter permease component
90	 37.96	+1	111467..112093	-	208	42518174	-	LJ0088	-	3-methyladenine DNA glycosylase
91	 31.68	0	112170..112532	+	120	42518175	-	LJ0089	-	hypothetical protein
92	 33.72	0	112529..113311	-	260	42518176	-	LJ0090	-	hypothetical protein
93	 36.29	0	113298..113534	-	78	42518177	-	LJ0091	-	methylated DNA-protein cysteine methyltransferase DNA binding subunit
94	 32.14	0	113494..113829	-	111	42518178	-	LJ0092	-	methylated DNA-protein cysteine methyltransferase ribonuclease-like subunit
95	 32.63	0	113946..114659	-	237	42518179	-	LJ0093	-	NAD-dependent deacetylase
96	 33.33	0	114786..115262	+	158	42518180	-	LJ0094	-	hypothetical protein
97	 36.05	0	115330..116799	-	489	42518181	-	LJ0095	-	cardiolipinsynthetase
98	 38.70	+1	116804..117511	-	235	42518182	-	LJ0096	-	hypothetical protein
99	 36.14	0	117535..118461	-	308	42518183	-	LJ0097	-	hypothetical protein
100	 36.61	0	118550..119281	+	243	42518184	-	LJ0098	-	hypothetical protein
34.52	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.