version 1.0
Clostridium perfringens ATCC 13124, complete genome - 1..3256683 2876 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 29.84 0 411..1784 + 457 110799791 dnaA CPF_0001 - chromosomal replication initiation protein 2 28.16 0 2079..3179 + 366 110798947 dnaN CPF_0002 - DNA polymerase III subunit beta 3 28.99 0 3305..3511 + 68 110799682 - CPF_0003 - S4 domain-containing protein 4 24.22 -1 3567..4652 + 361 110801062 recF CPF_0004 - recombination protein F 5 29.89 0 4666..4926 + 86 110800243 - CPF_0005 - hypothetical protein 6 33.44 +1 5163..7079 + 638 110799437 gyrB CPF_0006 - DNA gyrase subunit B 7 31.71 0 7101..9620 + 839 110800886 gyrA CPF_0007 - DNA gyrase subunit A 8 23.81 -1 15422..15925 + 167 110799285 - CPF_0010 - hypothetical protein 9 27.89 0 16274..19030 + 918 110798661 - CPF_0011 - hypothetical protein 10 28.24 0 19273..20667 + 464 110800557 - CPF_0012 - FAD-dependent oxidoreductase 11 28.63 0 20680..20913 + 77 110799910 - CPF_0013 - hypothetical protein 12 32.71 +1 21265..22542 + 425 110798993 serS CPF_0014 - seryl-tRNA synthetase 13 28.33 0 22719..23138 + 139 110801223 - CPF_0015 - hypothetical protein 14 27.72 0 23755..24021 + 88 110799632 - CPF_0018 - hypothetical protein 15 19.67 -2 24351..24533 - 60 110800136 - CPF_0021 - hypothetical protein 16 26.30 0 24771..25652 + 293 110800432 - CPF_0022 - hypothetical protein 17 31.52 0 25741..25905 - 54 110801245 - CPF_0023 - hypothetical protein 18 28.44 0 26114..29590 + 1158 110798865 addB CPF_0024 - ATP-dependent nuclease, subunit B 19 29.27 0 29580..33395 + 1271 110799297 addA CPF_0025 - ATP-dependent nuclease, subunit A 20 25.65 0 33434..34708 - 424 110800095 - CPF_0026 - polyA polymerase family protein 21 30.04 0 34839..35810 + 323 110799108 yhaM CPF_0027 - 3'-5' exoribonuclease YhaM 22 27.30 0 35842..37002 - 386 110799840 - CPF_0028 - ErfK/YbiS/YcfS/YnhG family protein 23 30.63 0 37194..38414 + 406 110800422 pepT CPF_0029 - peptidase T 24 30.14 0 38520..39395 - 291 110801244 - CPF_0030 - degV family protein 25 25.18 -1 39832..40971 + 379 110798802 - CPF_0032 - hypothetical protein 26 27.91 0 41086..41970 - 294 110798633 psd CPF_0033 - phosphatidylserine decarboxylase 27 25.79 0 42133..42702 + 189 110801421 - CPF_0034 - TetR family transcriptional regulator 28 30.25 0 42977..44242 + 421 110800603 - CPF_0036 - putative transporter 29 34.03 +1 44245..44676 + 143 110798954 - CPF_0037 - cytidine/deoxycytidylate deaminase family protein 30 26.80 0 44754..45197 + 147 110800043 - CPF_0038 - hypothetical protein 31 21.31 -2 45310..45675 + 121 110799624 - CPF_0039 - hypothetical protein 32 35.95 +1 45836..46447 + 203 110799578 - CPF_0040 - hypothetical protein 33 31.36 0 46559..48031 - 490 110799806 - CPF_0041 - hypothetical protein 34 33.58 +1 48363..49559 + 398 110800852 plc CPF_0042 - phospholipase C 35 26.97 0 49747..50673 + 308 110798981 - CPF_0043 - CobW/P47K family protein 36 26.15 0 50693..51277 + 194 110799721 - CPF_0044 - hypothetical protein 37 28.71 0 51373..52173 + 266 110800217 - CPF_0045 - putative permease 38 24.86 -1 52186..52905 + 239 110801031 - CPF_0046 - hypothetical protein 39 29.66 0 53171..53959 + 262 110798717 lgt CPF_0047 - prolipoprotein diacylglyceryl transferase 40 26.59 0 54732..55235 + 167 110799596 - CPF_0049 - putative lipoprotein 41 30.15 0 55675..56961 + 428 110800785 brnQ CPF_0050 - branched-chain amino acid transport system II carrier protein 42 22.84 -1 57107..57592 - 161 110800841 folA CPF_0051 - dihydrofolate reductase 43 30.90 0 57783..59426 + 547 110799164 dnaX CPF_0052 - DNA polymerase III subunits gamma and tau 44 38.35 +2 59538..59876 + 112 110800382 - CPF_0053 - hypothetical protein 45 31.99 0 59974..60570 + 198 110801227 recR CPF_0054 - recombination protein RecR 46 25.45 0 60796..61074 + 92 110800903 - CPF_0055 - hypothetical protein 47 28.67 0 61090..61368 + 92 110798861 bofA CPF_0056 - sigma-K factor processing regulatory protein BofA 48 22.77 -1 61643..62788 + 381 110800126 - CPF_0057 - hypothetical protein 49 30.00 0 62939..63118 + 59 110800350 - CPF_0058 - hypothetical protein 50 28.96 0 63187..63369 + 60 110801125 - CPF_0059 - hypothetical protein 51 30.27 0 63533..64609 + 358 110799142 - CPF_0060 - aminotransferase, class V 52 27.70 0 64678..65583 + 301 110799921 - CPF_0061 - putative D-3-phosphoglycerate dehydrogenase 53 26.65 0 65733..66989 + 418 110800818 - CPF_0062 - hypothetical protein 54 34.20 +1 67045..67740 - 231 110798765 mtnN CPF_0063 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 55 31.63 0 68118..68879 + 253 110799606 - CPF_0064 - HesA/MoeB/ThiF family protein 56 29.48 0 69170..70336 + 388 110800426 - CPF_0065 - major facilitator family transporter 57 28.03 0 70715..71299 + 194 110801197 - CPF_0066 - acetyltransferase 58 29.74 0 71391..72002 + 203 110799126 - CPF_0067 - deoxyguanosine kinase/deoxyadenosine kinase 59 27.44 0 77726..78574 + 282 110800004 - CPF_0069 - transcription antiterminator 60 31.25 0 78607..79086 - 159 110798827 - CPF_0070 - putative PTS system, N-acetylglucosamine-specific IIA component 61 32.64 +1 79744..81189 + 481 110799623 nagE CPF_0071 - PTS system, N-acetylglucosamine-specific IIBC component 62 22.93 -1 81258..81776 - 172 110799907 - CPF_0072 - TetR family transcriptional regulator 63 30.94 0 87896..89986 + 696 110800853 fusA CPF_0074 - elongation factor G 64 24.05 -1 90409..90645 + 78 110799899 - CPF_0075 - hypothetical protein 65 35.65 +1 90897..91844 + 315 110800941 - CPF_0076 - putative glucokinase 66 37.57 +2 92386..92928 + 180 110801331 - CPF_0077 - rubredoxin/rubrerythrin 67 26.60 0 93261..93884 + 207 110800392 - CPF_0078 - phosphoglycerate mutase family protein 68 26.72 0 94243..95013 - 256 110799326 - CPF_0079 - putative transcriptional regulator IolR 69 32.55 +1 95495..96649 + 384 110799131 - CPF_0080 - alcohol dehydrogenase, iron-containing 70 34.99 +1 96656..97501 + 281 110800986 - CPF_0081 - fructose-bisphosphate aldolase 71 32.45 0 97515..98531 + 338 110800026 - CPF_0082 - myo-inositol catabolism protein IolC 72 32.55 +1 98545..99312 + 255 110798642 - CPF_0083 - putative myo-inositol catabolism protein IolB 73 34.06 +1 99329..101248 + 639 110801040 iolD CPF_0084 - myo-inositol catabolism protein IolD 74 32.04 0 101318..102325 + 335 110799733 - CPF_0085 - myo-inositol 2-dehydrogenase 75 30.20 0 102444..103337 + 297 110800111 iolE CPF_0086 - myo-inositol catabolism protein IolE 76 32.58 +1 103419..105008 + 529 110800165 - CPF_0087 - putative symporter YidK 77 33.24 +1 105096..106145 + 349 110799870 - CPF_0088 - Gfo/Idh/MocA family oxidoreductase 78 31.36 0 106517..107275 + 252 110801109 - CPF_0089 - formate/nitrite transporter family protein 79 31.79 0 107507..108283 + 258 110801121 - CPF_0090 - 3-hydroxybutyryl-CoA dehydratase 80 35.01 +1 108386..109936 + 516 110799525 - CPF_0091 - propionate CoA-transferase 81 33.25 +1 110040..111176 + 378 110798756 - CPF_0092 - butyryl-CoA dehydrogenase 82 29.06 0 111587..111937 - 116 110799996 - CPF_0093 - hypothetical protein 83 33.69 +1 112515..113645 + 376 110799394 gldA CPF_0094 - glycerol dehydrogenase 84 33.39 +1 113671..115419 + 582 110799643 - CPF_0095 - dihydroxyacetone kinase family protein 85 30.82 0 115780..117213 + 477 110798992 - CPF_0096 - EmrB/QacA family drug resistance transporter 86 27.47 0 117490..117762 + 90 110801270 - CPF_0097 - hypothetical protein 87 32.91 +1 118161..119114 - 317 110800638 ldh CPF_0098 - L-lactate dehydrogenase 88 23.21 -1 119740..120915 + 391 110799194 - CPF_0099 - hypothetical protein 89 26.98 0 121034..121474 + 146 110798663 - CPF_0100 - hypothetical protein 90 27.40 0 121682..122422 + 246 110800936 - CPF_0101 - hypothetical protein 91 26.35 0 122534..123406 + 290 110800459 - CPF_0102 - hypothetical protein 92 30.91 0 123542..124864 - 440 110798691 - CPF_0103 - GTP-binding protein 93 27.02 0 125634..125918 - 94 110799136 - CPF_0104 - hypothetical protein 94 24.47 -1 126126..126362 - 78 110800311 - CPF_0105 - hypothetical protein 95 31.65 0 126740..128161 - 473 110799003 thiH CPF_0106 - thiamine biosynthesis protein ThiH 96 32.14 0 128267..128518 - 83 110799461 - CPF_0107 - hypothetical protein 97 30.59 0 128962..130527 + 521 110800767 - CPF_0108 - hypothetical protein 98 32.02 0 130674..130901 + 75 110800124 - CPF_0109 - hypothetical protein 99 28.89 0 131194..131418 + 74 110798567 - CPF_0110 - hypothetical protein 100 28.64 0 131476..132369 - 297 110799774 - CPF_0111 - putative N-acetylmuramoyl-L-alanine amidase 28.97 MEAN 3.58 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.