IslandPath Analysis: Clostridium perfringens ATCC 13124



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.97   STD DEV: 3.58
Clostridium perfringens ATCC 13124, complete genome - 1..3256683
2876 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.84	0	411..1784	+	457	110799791	dnaA	CPF_0001	-	chromosomal replication initiation protein
2	 28.16	0	2079..3179	+	366	110798947	dnaN	CPF_0002	-	DNA polymerase III subunit beta
3	 28.99	0	3305..3511	+	68	110799682	-	CPF_0003	-	S4 domain-containing protein
4	 24.22	-1	3567..4652	+	361	110801062	recF	CPF_0004	-	recombination protein F
5	 29.89	0	4666..4926	+	86	110800243	-	CPF_0005	-	hypothetical protein
6	 33.44	+1	5163..7079	+	638	110799437	gyrB	CPF_0006	-	DNA gyrase subunit B
7	 31.71	0	7101..9620	+	839	110800886	gyrA	CPF_0007	-	DNA gyrase subunit A
8	 23.81	-1	15422..15925	+	167	110799285	-	CPF_0010	-	hypothetical protein
9	 27.89	0	16274..19030	+	918	110798661	-	CPF_0011	-	hypothetical protein
10	 28.24	0	19273..20667	+	464	110800557	-	CPF_0012	-	FAD-dependent oxidoreductase
11	 28.63	0	20680..20913	+	77	110799910	-	CPF_0013	-	hypothetical protein
12	 32.71	+1	21265..22542	+	425	110798993	serS	CPF_0014	-	seryl-tRNA synthetase
13	 28.33	0	22719..23138	+	139	110801223	-	CPF_0015	-	hypothetical protein
14	 27.72	0	23755..24021	+	88	110799632	-	CPF_0018	-	hypothetical protein
15	 19.67	-2	24351..24533	-	60	110800136	-	CPF_0021	-	hypothetical protein
16	 26.30	0	24771..25652	+	293	110800432	-	CPF_0022	-	hypothetical protein
17	 31.52	0	25741..25905	-	54	110801245	-	CPF_0023	-	hypothetical protein
18	 28.44	0	26114..29590	+	1158	110798865	addB	CPF_0024	-	ATP-dependent nuclease, subunit B
19	 29.27	0	29580..33395	+	1271	110799297	addA	CPF_0025	-	ATP-dependent nuclease, subunit A
20	 25.65	0	33434..34708	-	424	110800095	-	CPF_0026	-	polyA polymerase family protein
21	 30.04	0	34839..35810	+	323	110799108	yhaM	CPF_0027	-	3'-5' exoribonuclease YhaM
22	 27.30	0	35842..37002	-	386	110799840	-	CPF_0028	-	ErfK/YbiS/YcfS/YnhG family protein
23	 30.63	0	37194..38414	+	406	110800422	pepT	CPF_0029	-	peptidase T
24	 30.14	0	38520..39395	-	291	110801244	-	CPF_0030	-	degV family protein
25	 25.18	-1	39832..40971	+	379	110798802	-	CPF_0032	-	hypothetical protein
26	 27.91	0	41086..41970	-	294	110798633	psd	CPF_0033	-	phosphatidylserine decarboxylase
27	 25.79	0	42133..42702	+	189	110801421	-	CPF_0034	-	TetR family transcriptional regulator
28	 30.25	0	42977..44242	+	421	110800603	-	CPF_0036	-	putative transporter
29	 34.03	+1	44245..44676	+	143	110798954	-	CPF_0037	-	cytidine/deoxycytidylate deaminase family protein
30	 26.80	0	44754..45197	+	147	110800043	-	CPF_0038	-	hypothetical protein
31	 21.31	-2	45310..45675	+	121	110799624	-	CPF_0039	-	hypothetical protein
32	 35.95	+1	45836..46447	+	203	110799578	-	CPF_0040	-	hypothetical protein
33	 31.36	0	46559..48031	-	490	110799806	-	CPF_0041	-	hypothetical protein
34	 33.58	+1	48363..49559	+	398	110800852	plc	CPF_0042	-	phospholipase C
35	 26.97	0	49747..50673	+	308	110798981	-	CPF_0043	-	CobW/P47K family protein
36	 26.15	0	50693..51277	+	194	110799721	-	CPF_0044	-	hypothetical protein
37	 28.71	0	51373..52173	+	266	110800217	-	CPF_0045	-	putative permease
38	 24.86	-1	52186..52905	+	239	110801031	-	CPF_0046	-	hypothetical protein
39	 29.66	0	53171..53959	+	262	110798717	lgt	CPF_0047	-	prolipoprotein diacylglyceryl transferase
40	 26.59	0	54732..55235	+	167	110799596	-	CPF_0049	-	putative lipoprotein
41	 30.15	0	55675..56961	+	428	110800785	brnQ	CPF_0050	-	branched-chain amino acid transport system II carrier protein
42	 22.84	-1	57107..57592	-	161	110800841	folA	CPF_0051	-	dihydrofolate reductase
43	 30.90	0	57783..59426	+	547	110799164	dnaX	CPF_0052	-	DNA polymerase III subunits gamma and tau
44	 38.35	+2	59538..59876	+	112	110800382	-	CPF_0053	-	hypothetical protein
45	 31.99	0	59974..60570	+	198	110801227	recR	CPF_0054	-	recombination protein RecR
46	 25.45	0	60796..61074	+	92	110800903	-	CPF_0055	-	hypothetical protein
47	 28.67	0	61090..61368	+	92	110798861	bofA	CPF_0056	-	sigma-K factor processing regulatory protein BofA
48	 22.77	-1	61643..62788	+	381	110800126	-	CPF_0057	-	hypothetical protein
49	 30.00	0	62939..63118	+	59	110800350	-	CPF_0058	-	hypothetical protein
50	 28.96	0	63187..63369	+	60	110801125	-	CPF_0059	-	hypothetical protein
51	 30.27	0	63533..64609	+	358	110799142	-	CPF_0060	-	aminotransferase, class V
52	 27.70	0	64678..65583	+	301	110799921	-	CPF_0061	-	putative D-3-phosphoglycerate dehydrogenase
53	 26.65	0	65733..66989	+	418	110800818	-	CPF_0062	-	hypothetical protein
54	 34.20	+1	67045..67740	-	231	110798765	mtnN	CPF_0063	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
55	 31.63	0	68118..68879	+	253	110799606	-	CPF_0064	-	HesA/MoeB/ThiF family protein
56	 29.48	0	69170..70336	+	388	110800426	-	CPF_0065	-	major facilitator family transporter
57	 28.03	0	70715..71299	+	194	110801197	-	CPF_0066	-	acetyltransferase
58	 29.74	0	71391..72002	+	203	110799126	-	CPF_0067	-	deoxyguanosine kinase/deoxyadenosine kinase
59	 27.44	0	77726..78574	+	282	110800004	-	CPF_0069	-	transcription antiterminator
60	 31.25	0	78607..79086	-	159	110798827	-	CPF_0070	-	putative PTS system, N-acetylglucosamine-specific IIA component
61	 32.64	+1	79744..81189	+	481	110799623	nagE	CPF_0071	-	PTS system, N-acetylglucosamine-specific IIBC component
62	 22.93	-1	81258..81776	-	172	110799907	-	CPF_0072	-	TetR family transcriptional regulator
63	 30.94	0	87896..89986	+	696	110800853	fusA	CPF_0074	-	elongation factor G
64	 24.05	-1	90409..90645	+	78	110799899	-	CPF_0075	-	hypothetical protein
65	 35.65	+1	90897..91844	+	315	110800941	-	CPF_0076	-	putative glucokinase
66	 37.57	+2	92386..92928	+	180	110801331	-	CPF_0077	-	rubredoxin/rubrerythrin
67	 26.60	0	93261..93884	+	207	110800392	-	CPF_0078	-	phosphoglycerate mutase family protein
68	 26.72	0	94243..95013	-	256	110799326	-	CPF_0079	-	putative transcriptional regulator IolR
69	 32.55	+1	95495..96649	+	384	110799131	-	CPF_0080	-	alcohol dehydrogenase, iron-containing
70	 34.99	+1	96656..97501	+	281	110800986	-	CPF_0081	-	fructose-bisphosphate aldolase
71	 32.45	0	97515..98531	+	338	110800026	-	CPF_0082	-	myo-inositol catabolism protein IolC
72	 32.55	+1	98545..99312	+	255	110798642	-	CPF_0083	-	putative myo-inositol catabolism protein IolB
73	 34.06	+1	99329..101248	+	639	110801040	iolD	CPF_0084	-	myo-inositol catabolism protein IolD
74	 32.04	0	101318..102325	+	335	110799733	-	CPF_0085	-	myo-inositol 2-dehydrogenase
75	 30.20	0	102444..103337	+	297	110800111	iolE	CPF_0086	-	myo-inositol catabolism protein IolE
76	 32.58	+1	103419..105008	+	529	110800165	-	CPF_0087	-	putative symporter YidK
77	 33.24	+1	105096..106145	+	349	110799870	-	CPF_0088	-	Gfo/Idh/MocA family oxidoreductase
78	 31.36	0	106517..107275	+	252	110801109	-	CPF_0089	-	formate/nitrite transporter family protein
79	 31.79	0	107507..108283	+	258	110801121	-	CPF_0090	-	3-hydroxybutyryl-CoA dehydratase
80	 35.01	+1	108386..109936	+	516	110799525	-	CPF_0091	-	propionate CoA-transferase
81	 33.25	+1	110040..111176	+	378	110798756	-	CPF_0092	-	butyryl-CoA dehydrogenase
82	 29.06	0	111587..111937	-	116	110799996	-	CPF_0093	-	hypothetical protein
83	 33.69	+1	112515..113645	+	376	110799394	gldA	CPF_0094	-	glycerol dehydrogenase
84	 33.39	+1	113671..115419	+	582	110799643	-	CPF_0095	-	dihydroxyacetone kinase family protein
85	 30.82	0	115780..117213	+	477	110798992	-	CPF_0096	-	EmrB/QacA family drug resistance transporter
86	 27.47	0	117490..117762	+	90	110801270	-	CPF_0097	-	hypothetical protein
87	 32.91	+1	118161..119114	-	317	110800638	ldh	CPF_0098	-	L-lactate dehydrogenase
88	 23.21	-1	119740..120915	+	391	110799194	-	CPF_0099	-	hypothetical protein
89	 26.98	0	121034..121474	+	146	110798663	-	CPF_0100	-	hypothetical protein
90	 27.40	0	121682..122422	+	246	110800936	-	CPF_0101	-	hypothetical protein
91	 26.35	0	122534..123406	+	290	110800459	-	CPF_0102	-	hypothetical protein
92	 30.91	0	123542..124864	-	440	110798691	-	CPF_0103	-	GTP-binding protein
93	 27.02	0	125634..125918	-	94	110799136	-	CPF_0104	-	hypothetical protein
94	 24.47	-1	126126..126362	-	78	110800311	-	CPF_0105	-	hypothetical protein
95	 31.65	0	126740..128161	-	473	110799003	thiH	CPF_0106	-	thiamine biosynthesis protein ThiH
96	 32.14	0	128267..128518	-	83	110799461	-	CPF_0107	-	hypothetical protein
97	 30.59	0	128962..130527	+	521	110800767	-	CPF_0108	-	hypothetical protein
98	 32.02	0	130674..130901	+	75	110800124	-	CPF_0109	-	hypothetical protein
99	 28.89	0	131194..131418	+	74	110798567	-	CPF_0110	-	hypothetical protein
100	 28.64	0	131476..132369	-	297	110799774	-	CPF_0111	-	putative N-acetylmuramoyl-L-alanine amidase
28.97	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.