IslandPath Analysis: Candidatus Phytoplasma australiense



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.23   STD DEV: 4.24
Candidatus Phytoplasma australiense, complete genome - 1..879959
684 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 23.83	-1	1..1368	+	455	197294170	dnaA	PA0001	-	Chromosomal replication initiator protein
2	 21.64	-1	1418..2554	+	378	197294171	dnaN	PA0002	-	DNA polymerase III beta subunit
3	 28.06	0	4983..5816	+	277	197294172	-	PA0004	-	Putative C-5 cytosine-specific DNA methylase
4	 20.90	-1	5809..6813	+	334	197294173	-	PA0005	-	hypothetical protein
5	 26.63	0	8338..10023	+	561	197294174	-	PA0006	-	Putative hydrolase of the metallo-beta-lactamase superfamily
6	 27.46	0	10370..11221	+	283	197294175	degV	PA0007	-	DegV family protein
7	 25.00	0	11861..12040	-	59	197294176	-	PA0008	-	hypothetical protein
8	 25.56	0	12089..12268	-	59	197294177	-	PA0009	-	hypothetical protein
9	 24.59	0	12270..13058	-	262	197294178	-	PA0010	-	Putative hydrolases of the haloacid dehalogenase-like (HAD) superfamily
10	 29.60	0	13226..14914	+	562	197294179	-	PA0011	-	Metallo-beta-lactamase family protein
11	 22.80	-1	15179..15643	+	154	197294180	spxA	PA0012	-	Putative regulatory protein spx
12	 22.05	-1	18841..19035	+	64	197294181	-	PA0015	-	hypothetical protein
13	 13.68	-2	19340..19909	+	189	197294182	-	PA0016	-	hypothetical protein
14	 15.38	-2	19933..20166	+	77	197294183	-	PA0017	-	hypothetical protein
15	 29.44	0	21039..22964	-	641	197294184	thrS	PA0018	-	Threonyl-tRNA synthetase
16	 26.65	0	22997..23938	-	313	197294185	-	PA0019	-	Exopolyphosphatase-related protein
17	 29.44	0	24023..25384	-	453	197294186	trmE	PA0020	-	tRNA modification GTPase
18	 29.77	0	25686..26666	-	326	197294187	-	PA0021	-	Phosphoesterase family protein
19	 25.40	0	26694..28268	-	524	197294188	ugpB	PA0022	-	Sugar transport system substrate-binding protein, periplasmic component
20	 24.97	0	28252..29136	-	294	197294189	ugpE	PA0023	-	Sugar transport system, permease protein
21	 25.90	0	29157..30071	-	304	197294190	ugpA	PA0024	-	Sugar transport system, permease protein
22	 30.53	0	30072..31178	-	368	197294191	malK	PA0025	-	ABC-type sugar transport system, ATPase component
23	 28.82	0	32270..33643	-	457	197294192	asnS	PA0026	-	Asparaginyl-tRNA synthetase
24	 17.95	-2	34337..34531	-	64	197294193	-	PA0027	-	hypothetical protein
25	 27.74	0	36144..36536	-	130	197294194	-	PA0030	-	hypothetical protein
26	 29.52	0	41240..42523	+	427	197294195	dnaB	PA0037	-	Replicative DNA helicase
27	 25.12	0	42546..43178	+	210	197294196	-	PA0038	-	hypothetical protein
28	 27.78	0	43168..43815	+	215	197294197	tmk	PA0039	-	Thymidylate kinase
29	 26.55	0	43835..44011	+	58	197294198	-	PA0040	-	hypothetical protein
30	 28.95	0	44092..44547	+	151	197294199	-	PA0041	-	hypothetical protein
31	 26.73	0	44540..44857	+	105	197294200	himA	PA0042	-	DNA-binding protein HU
32	 29.35	0	44881..45558	+	225	197294201	-	PA0043	-	Putative N6 adenine-specific DNA methyltransferase
33	 29.63	0	45699..45887	+	62	197294202	-	PA0045	-	hypothetical protein
34	 26.08	0	45903..46343	+	146	197294203	-	PA0046	-	hypothetical protein
35	 27.43	0	46336..46572	+	78	197294204	-	PA0047	-	hypothetical protein
36	 28.38	0	46774..48894	+	706	197294205	-	PA0048	-	Putative IMP dehydrogenase/GMP reductase
37	 31.27	0	57002..59572	+	856	197294206	nrdA	PA0056	-	Ribonucleotide reductase, alpha subunit
38	 24.71	0	59633..59806	+	57	197294207	-	PA0057	-	hypothetical protein
39	 33.13	+1	60583..61074	+	163	197294208	gepA	PA0058	-	Uncharacterized phage-associated protein
40	 34.11	+1	62092..63384	+	430	197294209	eno	PA0059	-	Enolase
41	 33.98	+1	64873..66423	+	516	197294210	gpmI	PA0060	-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
42	 30.46	0	66465..67820	+	451	197294211	pykA	PA0061	-	Pyruvate kinase
43	 20.24	-1	68558..68809	-	83	197294212	-	PA0062	-	hypothetical protein
44	 27.79	0	69145..70317	-	390	197294213	-	PA0063	-	Putative phage integrase
45	 21.86	-1	70471..70836	-	121	197294214	-	PA0064	-	hypothetical protein
46	 28.53	0	70867..71949	-	360	197294215	-	PA0065	-	hypothetical protein
47	 29.17	0	75483..77549	-	688	197294216	-	PA0068	-	Putative IMP dehydrogenase/GMP reductase
48	 29.35	0	77558..78235	-	225	197294217	-	PA0069	-	Putative N6 adenine-specific DNA methyltransferase
49	 26.73	0	78259..78576	-	105	197294218	himA	PA0070	-	DNA-binding protein HU
50	 27.78	0	79126..79773	-	215	197294219	tmk	PA0071	-	Thymidylate kinase
51	 30.45	0	80418..81701	-	427	197294220	dnaB	PA0073	-	Replicative DNA helicase
52	 22.79	-1	82938..83288	+	116	197294221	-	PA0074	-	hypothetical protein
53	 24.60	0	87478..87786	-	102	197294222	-	PA0080	-	hypothetical protein
54	 15.64	-2	87870..88112	+	80	197294223	-	PA0081	-	hypothetical protein
55	 26.99	0	89120..90049	-	309	197294224	-	PA0082	-	hypothetical protein
56	 25.87	0	90243..91340	-	365	197294225	-	PA0083	-	Probable phage associated protein
57	 28.95	0	92493..93359	+	288	197294226	thyA	PA0084	-	Thymidylate synthase
58	 26.10	0	93356..93853	+	165	197294227	folA	PA0085	-	Dihydrofolate reductase
59	 28.39	0	93847..94635	+	262	197294228	plsC	PA0086	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
60	 28.90	0	94880..95308	+	142	197294229	-	PA0087	-	hypothetical protein
61	 30.15	0	95524..96120	+	198	197294230	rpsD	PA0088	-	30S ribosomal protein S4
62	 27.03	0	96454..99102	+	882	197294231	mgtA	PA0089	-	Cation transport P-ATPase
63	 27.69	0	99142..99885	+	247	197294232	-	PA0090	-	hypothetical protein
64	 28.49	0	99914..100780	+	288	197294233	degV	PA0091	-	Uncharacterised BCR
65	 18.41	-2	101214..101414	+	66	197294234	-	PA0092	-	hypothetical protein
66	 31.41	0	101900..102886	+	328	197294235	gcp	PA0093	-	O-sialoglycoprotein endopeptidase-like protein
67	 26.11	0	104355..105545	+	396	197294236	dnaB	PA0094	-	Replicative DNA helicase
68	 26.67	0	106478..106912	+	144	197294237	infC	PA0095	-	Translation initiation factor IF3
69	 29.29	0	107019..107216	+	65	197294238	rpmI	PA0096	-	50S ribosomal protein L35
70	 29.94	0	107231..108115	+	294	197294239	rplT	PA0097	-	50S ribosomal protein L20
71	 22.68	-1	108185..108766	+	193	197294240	-	PA0098	-	hypothetical protein
72	 26.41	0	109106..109336	+	76	197294241	acpP	PA0099	-	Acyl carrier protein (ACP)
73	 29.94	0	112526..114970	+	814	197294242	leuS	PA0104	-	Leucyl-tRNA synthetase
74	 30.20	0	115074..115712	+	212	197294243	gmk	PA0105	-	Guanylate kinase
75	 23.67	-1	115717..115923	+	68	197294244	rpoZ	PA0106	-	Putative DNA-directed RNA polymerase,omega subunit
76	 27.30	0	116012..116923	+	303	197294245	mraW	PA0107	-	S-adenosyl-methyltransferase
77	 15.09	-2	117858..118268	+	136	197294246	-	PA0109	-	hypothetical protein
78	 25.43	0	118738..120204	+	488	197294247	norM	PA0110	-	Na+ driven multidrug efflux pump
79	 27.76	0	120426..121178	+	250	197294248	-	PA0111	-	hypothetical protein
80	 29.47	0	122230..123264	+	344	197294249	nrdF	PA0112	-	Ribonucleotide reductase, beta subunit
81	 25.93	0	123394..123798	+	134	197294250	mscL	PA0113	-	Putative large-conductance mechanosensitive channel
82	 29.86	0	124266..125993	+	575	197294251	mdlB	PA0114	-	ABC-type multidrug/protein/lipid transport system, ATPase component
83	 28.26	0	125990..127762	+	590	197294252	-	PA0115	-	Putative ABC transporter subunit
84	 31.48	0	129593..130186	+	197	197294253	-	PA0116	-	hypothetical protein
85	 25.00	0	130217..130360	+	47	197294254	-	PA0117	-	hypothetical protein
86	 28.80	0	131472..132023	+	183	197294255	-	PA0118	-	hypothetical protein
87	 31.27	0	132510..133430	+	306	197294256	-	PA0119	-	hypothetical protein
88	 32.91	+1	133720..134424	+	234	197294257	-	PA0120	-	Hemolysin III related protein
89	 32.33	0	134752..135942	+	396	197294258	ackA	PA0121	-	Acetate kinase
90	 23.04	-1	136630..136833	-	67	197294259	-	PA0122	-	hypothetical protein
91	 27.28	0	137056..139419	+	787	197294260	priA	PA0123	-	Primosomal protein N
92	 26.05	0	140839..141360	+	173	197294261	-	PA0124	-	hypothetical protein
93	 21.37	-1	141961..142194	+	77	197294262	-	PA0125	-	hypothetical protein
94	 26.67	0	142979..143923	-	314	197294263	-	PA0126	-	Putative phage integrase
95	 28.00	0	145183..145557	-	124	197294264	-	PA0127	-	RNA polymerase sigma factor
96	 28.89	0	145853..147406	-	517	197294265	metG	PA0128	-	Methionyl-tRNA synthetase
97	 33.94	+1	148444..149925	-	493	197294266	pepA	PA0129	-	Leucyl aminopeptidase
98	 27.48	0	150511..150903	+	130	197294267	-	PA0130	-	hypothetical protein
99	 30.80	0	151218..151493	-	91	197294268	-	PA0131	-	hypothetical protein
100	 26.34	0	152524..153567	-	347	197294269	potD	PA0132	-	ABC-type spermidine/putrescine-binding periplasmic protein
28.23	MEAN

4.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.