IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.10	0	1053..3038	+	661	59713184	-	VF_A0001	-	hypothetical protein
2	 42.82	+1	3388..3735	+	115	59713185	yoaB	VF_A0002	-	hypothetical protein
3	 38.78	0	4045..5586	+	513	59713186	-	VF_A0003	-	hypothetical protein
4	 39.93	0	5944..7050	-	368	59713187	pepT3	VF_A0004	-	peptidase T-like protein
5	 37.82	0	7276..8412	+	378	59713188	-	VF_A0005	-	peptide-methionine (S)-S-oxide reductase
6	 31.46	-1	8513..8833	+	106	59713189	-	VF_A0006	-	hypothetical protein
7	 40.60	0	8922..9485	-	187	59713190	-	VF_A0007	-	glutathione-dependent formaldehyde-activating enzyme
8	 36.20	0	9889..10761	+	290	59713191	-	VF_A0008	-	phospholipase
9	 41.48	+1	10816..12264	+	482	59713192	katA	VF_A0009	-	hydroperoxidase HPII(III) (catalase) KatA
10	 25.64	-2	12290..12406	+	38	59713193	-	VF_A0010	-	hypothetical protein
11	 33.70	0	12484..13023	+	179	59713194	-	VF_A0011	-	hypothetical protein
12	 32.41	-1	13066..13281	-	71	59713195	-	VF_A0012	-	hypothetical protein
13	 41.39	+1	13291..14469	+	392	59713196	-	VF_A0013	-	chitin-binding protein
14	 34.81	0	14679..15218	+	179	59713197	-	VF_A0014	-	hypothetical protein
15	 39.26	0	15469..17055	+	528	59713198	-	VF_A0015	-	ABC transporter ATP-binding protein
16	 38.18	0	17141..17779	+	212	59713199	-	VF_A0016	-	DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
17	 39.39	0	17825..19294	-	489	59713200	-	VF_A0017	-	putative lipoprotein
18	 42.28	+1	19819..20880	+	353	59713201	-	VF_A0018	-	ribosome-associated GTPase
19	 36.76	0	21110..21634	+	174	59713202	-	VF_A0019	-	hypoxanthine-guanine phosphoribosyltransferase
20	 40.48	0	21694..21945	+	83	59713203	-	VF_A0020	-	hypothetical protein
21	 34.64	0	22002..22154	-	50	172087788	-	VF_A1173	-	hypothetical protein
22	 31.17	-1	22298..22528	-	76	172087789	-	VF_A1174	-	hypothetical protein
23	 37.63	0	22845..23030	+	61	172087790	-	VF_A1175	-	hypothetical protein
24	 37.16	0	23364..24878	+	504	59713204	-	VF_A0021	-	di-/tripeptide transporter
25	 31.97	-1	25270..25416	-	48	59713205	-	VF_A0022	-	hypothetical protein
26	 38.75	0	25486..26298	-	270	59713206	-	VF_A0023	-	enoyl-CoA hydratase
27	 39.22	0	26478..27428	+	316	59713207	-	VF_A0024	-	LysR family transcriptional regulator
28	 37.50	0	27455..27910	-	151	59713208	-	VF_A0025	-	MarR family transcriptional regulator
29	 36.30	0	28028..28330	+	100	59713209	-	VF_A0026	-	hypothetical protein
30	 41.37	+1	28398..29642	-	414	59713210	-	VF_A0027	-	NADH oxidase
31	 39.67	0	29782..30981	-	399	59713211	setC	VF_A0028	-	sugar efflux system
32	 37.16	0	31173..32060	+	295	59713212	-	VF_A0029	-	AraC family transcriptional regulator
33	 40.68	0	32176..33033	+	285	59713213	-	VF_A0030	-	drug/metabolite exporter family protein
34	 39.55	0	33115..33999	-	294	59713214	-	VF_A0031	-	LysR family transcriptional regulator
35	 38.01	0	34163..34696	+	177	59713215	-	VF_A0032	-	thioredoxin peroxidase
36	 37.63	0	34786..35157	-	123	59713216	-	VF_A0033	-	hypothetical protein
37	 41.92	+1	35233..36129	-	298	59713217	-	VF_A0034	-	LysR family transcriptional regulator
38	 43.42	+1	36247..38268	+	673	59713218	yjcS	VF_A0035	-	alkyl sulfatase
39	 42.77	+1	38543..39178	-	211	59713219	-	VF_A0036	-	hypothetical protein
40	 39.92	0	39175..40587	-	470	59713220	-	VF_A0037	-	hypothetical protein
41	 40.36	0	40996..41835	+	279	59713221	-	VF_A0038	-	LysR family transcriptional regulator
42	 31.03	-1	41984..42070	+	28	172087791	-	VF_A1176	-	hypothetical protein
43	 42.21	+1	42109..43449	-	446	59713222	uhpC	VF_A0039	-	regulatory protein UhpC
44	 41.22	+1	43458..44915	-	485	172087792	uhpB	VF_A0040	-	sensory histidine kinase UhpB
45	 42.20	+1	44954..45562	-	202	59713224	uhpA	VF_A0041	-	DNA-binding response regulator in two-component regulatory system wtih UhpB
46	 39.64	0	45710..47104	-	464	59713225	uhpT	VF_A0042	-	sugar phosphate antiporter
47	 35.89	0	47378..48121	-	247	59713226	-	VF_A0043	-	TetR family transcriptional regulator
48	 38.92	0	48364..49437	+	357	59713227	-	VF_A0044	-	acriflavin resistance periplasmic protein
49	 40.02	0	49437..50498	+	353	59713228	-	VF_A0045	-	hypothetical protein
50	 39.47	0	50498..53563	+	1021	172087793	-	VF_A0046	-	acriflavin resistance plasma membrane protein
51	 37.09	0	53662..54114	-	150	59713231	-	VF_A0048	-	pentapeptide repeat-containing protein
52	 36.87	0	54120..54515	-	131	59713232	-	VF_A0049	-	ArsR family transcriptional regulator
53	 39.54	0	54571..55536	-	321	59713233	-	VF_A0050	-	transporter
54	 41.73	+1	55692..56108	+	138	59713234	-	VF_A0051	-	putative cytoplasmic protein
55	 43.19	+1	56237..56956	-	239	59713235	ydfG	VF_A0052	-	L-allo-threonine dehydrogenase, NAD(P)-binding
56	 37.76	0	57119..58021	+	300	59713236	-	VF_A0053	-	LysR family transcriptional regulator
57	 36.67	0	58085..58294	-	69	59713237	-	VF_A0054	-	Cro/Cl family transcriptional regulator
58	 34.44	0	58306..58848	-	180	59713238	-	VF_A0055	-	hypothetical protein
59	 34.93	0	59062..60378	+	438	59713239	-	VF_A0056	-	GGDEF domain-containing protein
60	 35.69	0	60359..62350	-	663	59713240	-	VF_A0057	-	GGDEF domain-containing protein
61	 35.22	0	62347..62928	-	193	59713241	-	VF_A0058	-	hypothetical protein
62	 38.97	0	62931..65114	-	727	59713242	-	VF_A0059	-	TonB-dependent outer membrane receptor
63	 37.16	0	65673..66116	+	147	59713243	cmtB	VF_A0060	-	mannitol-specific enzyme IIA component of PTS
64	 42.35	+1	66130..67527	+	465	59713244	cmtA	VF_A0061	-	fused mannitol-specific PTS enzymes: IIB component/IIC component
65	 38.76	0	67578..68849	+	423	59713245	yggP	VF_A0062	-	dehydrogenase
66	 34.10	0	68908..69426	+	172	59713246	yggD	VF_A0063	-	putative DNA-binding transcriptional regulator
67	 35.10	0	69436..70170	+	244	59713247	yggC	VF_A0064	-	putative fructose transport system kinase
68	 31.18	-1	70115..70207	-	30	59713249	-	VF_A0066	-	hypothetical protein
69	 38.96	0	70180..70926	+	248	59713248	-	VF_A0065	-	putative hydrolase
70	 40.86	0	71015..72223	-	402	59713250	-	VF_A0067	-	oxalate/formate antiporter
71	 37.16	0	72233..72415	-	60	59713251	-	VF_A0068	-	hypothetical protein
72	 36.69	0	72796..73569	+	257	59713252	-	VF_A0069	-	hypothetical protein
73	 34.20	0	73619..74080	-	153	59713253	-	VF_A0070	-	putative lipoprotein
74	 34.08	0	74370..74903	+	177	59713254	hnoX	VF_A0071	-	heme nitric oxide and/or oxygen binding protein HNOX
75	 35.71	0	74922..76649	+	575	59713255	-	VF_A0072	-	hybrid two component sensor histidine kinase
76	 39.43	0	76715..78190	-	491	59713256	-	VF_A0073	-	di-/tripeptide transporter
77	 42.24	+1	78455..79375	-	306	59713257	-	VF_A0074	-	hypothetical protein
78	 38.79	0	79398..83792	-	1464	59713258	mshQ2	VF_A0075	-	MshQ protein
79	 40.69	0	83785..84219	-	144	59713259	mshP2	VF_A0076	-	MshP protein
80	 42.64	+1	84191..84985	-	264	59713260	mshO2	VF_A0077	-	MshO protein
81	 38.74	0	84985..85539	-	184	59713261	mshD2	VF_A0078	-	MshD protein
82	 36.19	0	85529..86053	-	174	59713262	mshC2	VF_A0079	-	MSHA pilin protein MshC
83	 38.30	0	86425..87270	-	281	59713263	dmsC	VF_A0080	-	dimethyl sulfoxide reductase, anaerobic, subunit C
84	 39.35	0	87272..87886	-	204	59713264	ynfG	VF_A0081	-	oxidoreductase, Fe-S subunit
85	 41.86	+1	87897..90335	-	812	59713265	dmsA	VF_A0082	-	dimethyl sulfoxide reductase, anaerobic, subunit A
86	 32.48	-1	90671..91255	+	194	59713266	dmsD	VF_A0083	-	twin-argninine leader-binding protein for DmsA and TorA
87	 39.43	0	91255..91812	+	185	59713267	-	VF_A0084	-	ferredoxin-type protein NapF
88	 40.73	0	91891..92985	-	364	59713268	-	VF_A0085	-	transporter
89	 41.71	+1	93153..94907	-	584	59713269	ggt	VF_A0086	-	gamma-glutamyltranspeptidase
90	 38.76	0	95069..96136	-	355	59713270	-	VF_A0087	-	outer membrane protein RomA
91	 37.56	0	96371..96985	+	204	59713271	-	VF_A0088	-	transcriptional regulator
92	 37.86	0	97108..98079	+	323	59713272	-	VF_A0089	-	hydrolase/lipase
93	 29.89	-1	98085..99218	-	377	59713273	-	VF_A0090	-	astacin-like metalloendopeptidase
94	 40.15	0	100117..101964	-	615	59713274	-	VF_A0091	-	M3 family peptidase
95	 37.57	0	102112..103668	-	518	59713275	-	VF_A0092	-	methyl-accepting chemotaxis protein, putative aerotaxis receptor
96	 41.36	+1	104153..105523	+	456	59713276	ygfQ	VF_A0093	-	transporter
97	 39.90	0	105602..106210	-	202	59713277	ynjF	VF_A0094	-	phosphatidyl transferase, inner membrane protein
98	 40.59	0	106203..106850	-	215	59713278	ynjD	VF_A0095	-	ABC transporter ATP-binding protein
99	 42.18	+1	106864..108525	-	553	59713279	-	VF_A0096	-	ABC transporter permease protein
100	 41.19	+1	108543..109688	-	381	59713280	ynjB	VF_A0097	-	hypothetical protein
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.