IslandPath Analysis: Vibrio vulnificus YJ016



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.28   STD DEV: 4.03
Vibrio vulnificus YJ016 chromosome I, complete sequence - 1..3354505
3259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.49	+1	353..787	-	144	37678185	-	VV0001	-	flavodoxin
2	 51.12	+1	835..2223	-	462	37678186	trmE	VV0002	-	tRNA modification GTPase TrmE
3	 48.89	0	2314..3933	-	539	37678187	-	VV0003	-	putative inner membrane protein translocase component YidC
4	 45.10	0	4160..4516	-	118	37678188	rnpA	VV0004	-	ribonuclease P
5	 49.65	0	4530..4670	-	46	37678189	rpmH	VV0005	-	50S ribosomal protein L34
6	 49.19	0	4898..5635	-	245	37678190	-	VV0006	-	ABC-type polar amino acid transport system, ATPase component
7	 48.80	0	5632..6342	-	236	37678191	-	VV0007	-	ABC-type amino acid transport system, permease component
8	 47.14	0	6385..7137	-	250	37678192	-	VV0009	-	ABC-type amino acid transport system, periplasmic component
9	 49.08	0	6389..6661	+	90	37678193	-	VV0008	-	hypothetical protein
10	 39.02	-1	7282..7404	+	40	37678194	-	VV0010	-	hypothetical protein
11	 49.68	0	7450..8856	+	468	37678195	dnaA	VV0011	-	chromosomal replication initiation protein
12	 50.68	+1	8917..10017	+	366	37678196	-	VV0012	-	DNA polymerase III subunit beta
13	 46.48	0	10027..11106	+	359	37678197	recF	VV0013	-	recombination protein F
14	 49.21	0	11125..13542	+	805	37678198	gyrB	VV0014	-	DNA gyrase subunit B
15	 46.67	0	13955..14389	+	144	37678199	-	VV0015	-	16 kDa heat shock protein A
16	 45.80	0	14370..16631	-	753	37678200	-	VV0017	-	GGDEF family protein
17	 41.36	-1	15081..15242	+	53	37678201	-	VV0016	-	hypothetical protein
18	 47.10	0	16651..17907	-	418	37678202	avtA	VV0018	-	valine--pyruvate transaminase
19	 45.18	0	18206..18568	+	120	37678203	-	VV0019	-	hypothetical protein
20	 48.80	0	18651..20732	-	693	37678204	glyS	VV0020	-	glycyl-tRNA synthetase subunit beta
21	 48.37	0	20746..21663	-	305	37678205	glyQ	VV0021	-	glycyl-tRNA synthetase subunit alpha
22	 50.99	+1	22144..22698	+	184	37678206	-	VV0022	-	hypothetical protein
23	 41.00	-1	22858..23118	+	86	37678207	-	VV0023	-	NADH dehydrogenase subunit II-related protein
24	 46.75	0	23158..23403	-	81	37678208	-	VV0024	-	cell developmental protein SirA
25	 43.01	0	23535..23720	+	61	37678209	-	VV0025	-	hypothetical protein
26	 52.17	+1	23849..24814	+	321	37678210	-	VV0026	-	transcriptional regulator
27	 51.89	+1	24886..25866	-	326	37678211	-	VV0027	-	Zn-binding alcohol dehydrogenase
28	 52.32	+1	26027..27190	-	387	37678212	fadA	VV0028	-	3-ketoacyl-CoA thiolase
29	 49.31	0	27203..29374	-	723	37678213	fadB	VV0029	-	multifunctional fatty acid oxidation complex subunit alpha
30	 46.96	0	29622..30245	+	207	37678214	-	VV0030	-	hypothetical protein
31	 48.77	0	30291..31748	+	485	37678215	-	VV0031	-	Trk-type K+ transport system, membrane component
32	 39.39	-1	31661..31792	+	43	37678216	-	VV0032	-	hypothetical protein
33	 41.24	-1	31755..32285	+	176	37678217	hemG	VV0033	-	protoporphyrinogen oxidase
34	 41.56	-1	38276..39199	-	307	37678218	-	VV0034	-	DNA-binding transcriptional regulator IlvY
35	 46.46	0	39308..40792	+	494	37678219	-	VV0035	-	ketol-acid reductoisomerase
36	 42.86	0	40988..41239	-	83	37678220	-	VV0036	-	hypothetical protein
37	 50.00	0	41385..44504	-	1039	37678221	-	VV0037	-	putative multidrug resistance protein
38	 46.43	0	44516..45622	-	368	37678222	-	VV0038	-	membrane-fusion protein
39	 44.85	0	45640..46221	-	193	37678223	-	VV0039	-	transcriptional regulator
40	 49.03	0	46389..48407	+	672	37678224	-	VV0040	-	ATP-dependent DNA helicase Rep
41	 47.68	0	48469..48921	-	150	37678225	-	VV0041	-	cytochrome c5
42	 29.94	-2	50663..50839	-	58	37678226	-	VV0042	-	hypothetical protein
43	 49.59	0	50886..52601	+	571	37678227	-	VV0043	-	peptide ABC transporter, ATP-binding protein
44	 49.52	0	52677..54233	+	518	37678228	-	VV0044	-	peptide ABC transporter, periplasmic peptide-binding protein
45	 48.77	0	54385..55362	+	325	37678229	-	VV0045	-	peptide ABC transporter, permease component
46	 51.01	+1	55365..56303	+	312	37678230	-	VV0046	-	peptide ABC transporter, permease component
47	 43.65	0	56374..56499	+	41	37678231	-	VV0047	-	hypothetical protein
48	 47.94	0	56490..57434	+	314	37678232	-	VV0048	-	hypothetical protein
49	 46.53	0	57492..60218	-	908	37678233	-	VV0049	-	hypothetical protein
50	 48.15	0	60471..61334	+	287	37678234	-	VV0050	-	hypothetical protein
51	 51.75	+1	61356..62957	-	533	37678235	-	VV0051	-	hypothetical protein
52	 48.34	0	62933..63505	-	190	37678236	-	VV0052	-	putative RNA polymerase ECF-type sigma factor
53	 50.76	+1	63502..64941	-	479	37678237	-	VV0053	-	hypothetical protein
54	 51.09	+1	64970..66304	-	444	37678238	-	VV0054	-	hypothetical protein
55	 49.25	0	66457..67254	-	265	37678239	-	VV0055	-	hypothetical protein
56	 49.39	0	67355..68251	+	298	37678240	-	VV0056	-	response regulator
57	 51.59	+1	68267..69334	+	355	37678241	-	VV0057	-	gluconate utilization system Gnt-I transcriptional repressor
58	 53.64	+1	69026..69286	-	86	37678242	-	VV0058	-	hypothetical protein
59	 55.93	+2	69385..71181	-	598	37678243	-	VV0059	-	phosphogluconate dehydratase
60	 50.57	+1	71178..71699	-	173	37678244	-	VV0060	-	thermoresistant gluconokinase
61	 51.41	+1	71813..73228	+	471	37678245	-	VV0061	-	putative gluconate permease
62	 52.78	+1	73238..73849	+	203	37678246	-	VV0062	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
63	 39.76	-1	74322..74819	+	165	37678247	-	VV0063	-	hypothetical protein
64	 38.61	-1	74819..75349	+	176	37678248	-	VV0064	-	hypothetical protein
65	 53.10	+1	75517..76872	-	451	37678249	-	VV0065	-	glutathione reductase
66	 51.19	+1	77024..77863	-	279	37678250	-	VV0066	-	hypothetical protein
67	 52.39	+1	78071..80179	+	702	37678251	-	VV0067	-	Zn-dependent oligopeptidase
68	 48.21	0	80227..80757	+	176	37678252	-	VV0068	-	hypothetical protein
69	 49.03	0	80299..80763	-	154	37678253	-	VV0069	-	DNA-binding transcriptional regulator AsnC
70	 50.21	0	80872..84018	+	1048	37678254	-	VV0070	-	sensory box/GGDEF family protein
71	 54.49	+2	84128..84907	+	259	37678255	-	VV0071	-	SAM-dependent methyltransferase
72	 47.97	0	85067..85558	+	163	37678256	-	VV0072	-	hypothetical protein
73	 50.84	+1	85662..86552	-	296	37678257	-	VV0073	-	madN protein
74	 45.39	0	86618..87148	-	176	37678258	-	VV0075	-	universal stress protein UspA
75	 42.57	0	87100..87738	+	212	37678259	-	VV0074	-	ferritin-like protein
76	 44.14	0	87825..88148	+	107	37678260	-	VV0076	-	universal stress protein UspB
77	 52.39	+1	88206..89438	+	410	37678261	-	VV0077	-	flavoprotein
78	 50.59	+1	89512..90693	-	393	37678262	-	VV0078	-	uncharacterized enzyme of heme biosynthesis
79	 49.83	0	90690..91901	-	403	37678263	-	VV0079	-	uncharacterized enzyme of heme biosynthesis
80	 50.83	+1	91916..92698	-	260	37678264	hemD	VV0080	-	uroporphyrinogen-III synthase
81	 53.57	+1	92649..93587	-	312	37678265	hemC	VV0081	-	porphobilinogen deaminase
82	 43.45	0	93713..93880	+	55	37678266	-	VV0082	-	hypothetical protein
83	 49.03	0	93951..96485	+	844	37678267	cyaA	VV0083	-	adenylate cyclase
84	 46.03	0	96618..96932	-	104	37678268	cyaY	VV0085	-	frataxin-like protein
85	 41.20	-1	96909..97124	+	71	37678269	-	VV0084	-	hypothetical protein
86	 51.91	+1	97173..98426	+	417	37678270	-	VV0086	-	diaminopimelate decarboxylase
87	 50.66	+1	98437..99267	+	276	37678271	dapF	VV0087	-	diaminopimelate epimerase
88	 50.43	+1	99310..100011	+	233	37678272	-	VV0088	-	hypothetical protein
89	 52.94	+1	99962..100930	+	322	37678273	xerC	VV0089	-	site-specific tyrosine recombinase XerC
90	 53.70	+1	100927..101643	+	238	37678274	-	VV0090	-	hydrolase
91	 51.33	+1	101773..104262	+	829	37678275	-	VV0091	-	GGDEF family protein
92	 53.63	+1	104312..104917	-	201	37678276	-	VV0092	-	hypothetical protein
93	 52.55	+1	104914..106464	-	516	37678277	-	VV0093	-	hypothetical protein
94	 48.24	0	106494..106976	+	160	37678278	-	VV0094	-	hypothetical protein
95	 50.42	+1	107074..107904	-	276	37678279	-	VV0095	-	hydrolase
96	 49.55	0	108085..109083	-	332	37678280	-	VV0096	-	lysophospholipase
97	 50.16	0	109141..109764	+	207	37678281	rhtB	VV0097	-	homoserine/homoserine lactone efflux protein
98	 48.77	0	109818..111041	+	407	37678282	-	VV0098	-	signal transduction protein
99	 48.51	0	111148..111483	+	111	37678283	-	VV0099	-	transcriptional regulator
100	 52.20	+1	111513..112514	+	333	37678284	-	VV0100	-	glyceraldehyde-3-phosphate dehydrogenase
46.28	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.