IslandPath Analysis: Acidithiobacillus ferrooxidans ATCC 53993



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.78   STD DEV: 5.19
Acidithiobacillus ferrooxidans ATCC 53993, complete genome - 1..2885038
2826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.78	0	252..1610	+	452	198282149	-	Lferr_0001	-	chromosomal replication initiator protein DnaA
2	 57.01	0	1894..2991	+	365	198282150	-	Lferr_0002	-	DNA polymerase III, beta subunit
3	 62.01	0	2993..4045	+	350	198282151	-	Lferr_0003	-	DNA replication and repair protein RecF
4	 59.60	0	4042..6447	+	801	198282152	-	Lferr_0004	-	DNA gyrase, B subunit
5	 62.50	0	6592..10098	+	1168	198282153	-	Lferr_0005	-	hypothetical protein
6	 56.14	0	10193..10705	+	170	198282154	-	Lferr_0006	-	Spore coat U domain protein
7	 59.54	0	10719..11462	+	247	198282155	-	Lferr_0007	-	chaperone protein EcpD
8	 60.31	0	11449..13872	+	807	198282156	-	Lferr_0008	-	fimbrial biogenesis outer membrane usher protein
9	 58.28	0	13869..14333	+	154	198282157	-	Lferr_0009	-	Spore coat U domain protein
10	 55.81	0	14356..14484	-	42	198282158	-	Lferr_0010	-	Septum formation topological specificity factor MinE
11	 59.54	0	14492..14926	-	144	198282159	-	Lferr_0011	-	hypothetical protein
12	 53.57	-1	15259..15510	-	83	198282160	-	Lferr_0012	-	cell division topological specificity factor MinE
13	 60.37	0	15512..16321	-	269	198282161	-	Lferr_0013	-	septum site-determining protein MinD
14	 63.11	0	16340..17071	-	243	198282162	-	Lferr_0014	-	septum site-determining protein MinC
15	 59.33	0	17102..17428	-	108	198282163	-	Lferr_0015	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
16	 62.64	0	17425..19980	-	851	198282164	-	Lferr_0016	-	DNA topoisomerase I
17	 58.96	0	19984..20424	-	146	198282165	-	Lferr_0017	-	protein of unknown function DUF494
18	 68.31	+1	20434..21531	-	365	198282166	-	Lferr_0018	-	DNA protecting protein DprA
19	 61.71	0	21528..22577	-	349	198282167	-	Lferr_0019	-	Peptidoglycan-binding LysM
20	 59.33	0	22660..23163	+	167	198282168	-	Lferr_0020	-	peptide deformylase
21	 65.50	+1	23156..24097	+	313	198282169	-	Lferr_0021	-	methionyl-tRNA formyltransferase
22	 64.81	+1	24103..25398	+	431	198282170	-	Lferr_0022	-	sun protein
23	 61.83	0	25389..25988	+	199	198282171	-	Lferr_0023	-	hypothetical protein
24	 62.05	0	25961..28171	+	736	198282172	-	Lferr_0024	-	integral membrane sensor signal transduction histidine kinase
25	 64.18	+1	28193..29599	+	468	198282173	-	Lferr_0025	-	two component, sigma54 specific, transcriptional regulator, Fis family
26	 49.49	-1	29596..29793	+	65	198282174	-	Lferr_0026	-	hypothetical protein
27	 54.76	0	29747..29914	+	55	198282175	-	Lferr_0027	-	hypothetical protein
28	 54.28	0	30028..31521	+	497	198282176	-	Lferr_0028	-	integral membrane sensor signal transduction histidine kinase
29	 59.28	0	31563..32930	+	455	198282177	-	Lferr_0029	-	two component, sigma54 specific, transcriptional regulator, Fis family
30	 53.07	-1	33353..34852	+	499	198282178	-	Lferr_0030	-	Pyrrolo-quinoline quinone
31	 48.27	-2	34969..36327	+	452	198282179	-	Lferr_0031	-	hypothetical protein
32	 65.49	+1	36399..37754	-	451	198282180	-	Lferr_0032	-	tRNA modification GTPase TrmE
33	 61.56	0	37792..39378	-	528	198282181	-	Lferr_0033	-	60 kDa inner membrane insertion protein
34	 60.19	0	39394..39609	-	71	198282182	-	Lferr_0034	-	protein of unknown function DUF37
35	 64.67	+1	39606..39956	-	116	198282183	-	Lferr_0035	-	ribonuclease P protein component
36	 62.96	0	39961..40095	-	44	198282184	-	Lferr_0036	-	ribosomal protein L34
37	 60.25	0	40166..41833	-	555	198282185	-	Lferr_0037	-	ABC transporter related
38	 63.01	0	41931..42833	-	300	198282186	-	Lferr_0038	-	transcriptional regulator, LysR family
39	 68.64	+1	42895..44007	-	370	198282187	-	Lferr_0039	-	secretion protein HlyD family protein
40	 68.05	+1	43982..45427	-	481	198282188	-	Lferr_0040	-	RND efflux system, outer membrane lipoprotein, NodT family
41	 63.59	0	45417..47072	-	551	198282189	-	Lferr_0041	-	major facilitator superfamily MFS_1
42	 57.15	0	47544..48752	+	402	198282190	-	Lferr_0042	-	C4-dicarboxylate transporter/malic acid transport protein
43	 59.53	0	48792..49604	+	270	198282191	-	Lferr_0043	-	hypothetical protein
44	 56.68	0	49629..50639	+	336	198282192	-	Lferr_0044	-	putative sulfate-binding protein
45	 58.82	0	50692..51774	+	360	198282193	-	Lferr_0045	-	TQO small subunit DoxD
46	 54.78	0	51872..52519	+	215	198282194	-	Lferr_0046	-	Rhodanese domain protein
47	 57.21	0	52580..52981	+	133	198282195	-	Lferr_0047	-	Rhodanese domain protein
48	 56.84	0	53012..53530	-	172	198282196	-	Lferr_0048	-	Redoxin domain protein
49	 59.65	0	53603..54685	-	360	198282197	-	Lferr_0049	-	TQO small subunit DoxD
50	 58.09	0	54738..55751	-	337	198282198	-	Lferr_0050	-	putative sulfate-binding protein
51	 58.79	0	55773..56585	-	270	198282199	-	Lferr_0051	-	hypothetical protein
52	 60.93	0	56620..57090	-	156	198282200	-	Lferr_0052	-	hypothetical protein
53	 65.13	+1	57137..57919	-	260	198282201	-	Lferr_0053	-	hypothetical protein
54	 61.66	0	57923..58981	-	352	198282202	-	Lferr_0054	-	protein of unknown function DUF395 YeeE/YedE
55	 63.01	0	59118..59774	-	218	198282203	-	Lferr_0055	-	multiple antibiotic resistance (MarC)-related protein
56	 63.57	0	59886..60143	+	85	198282204	-	Lferr_0056	-	regulatory protein, FmdB family
57	 63.65	0	60227..62017	+	596	198282205	-	Lferr_0057	-	aspartyl-tRNA synthetase
58	 64.66	+1	62103..63200	+	365	198282206	-	Lferr_0058	-	quinolinate synthetase complex, A subunit
59	 64.05	+1	63209..63820	+	203	198282207	-	Lferr_0059	-	phospholipid/glycerol acyltransferase
60	 59.10	0	63900..64652	+	250	198282208	-	Lferr_0060	-	protein of unknown function DUF28
61	 66.13	+1	64678..65235	+	185	198282209	-	Lferr_0061	-	crossover junction endodeoxyribonuclease RuvC
62	 65.46	+1	65264..65845	+	193	198282210	-	Lferr_0062	-	Holliday junction DNA helicase RuvA
63	 67.64	+1	65888..66910	+	340	198282211	-	Lferr_0063	-	Holliday junction DNA helicase RuvB
64	 59.57	0	66900..67322	+	140	198282212	-	Lferr_0064	-	tol-pal system-associated acyl-CoA thioesterase
65	 60.97	0	67329..68030	+	233	198282213	-	Lferr_0065	-	protein TolQ
66	 63.26	0	68027..68437	+	136	198282214	-	Lferr_0066	-	protein TolR
67	 63.84	0	68434..69387	+	317	198282215	-	Lferr_0067	-	protein TolA
68	 64.85	+1	69380..70648	+	422	198282216	-	Lferr_0068	-	Tol-Pal system beta propeller repeat protein TolB
69	 65.22	+1	70690..71379	-	229	198282217	-	Lferr_0069	-	exsB protein
70	 62.02	0	71382..72026	-	214	198282218	-	Lferr_0070	-	Radical SAM domain protein
71	 63.37	0	72026..72844	-	272	198282219	-	Lferr_0071	-	tol-pal system protein YbgF
72	 63.90	0	72865..73443	-	192	198282220	-	Lferr_0072	-	peptidoglycan-associated lipoprotein
73	 55.89	0	73504..73800	+	98	198282221	-	Lferr_0073	-	hypothetical protein
74	 60.20	0	73778..73978	+	66	198282222	-	Lferr_0074	-	hypothetical protein
75	 61.24	0	74064..75482	-	472	198282223	-	Lferr_0075	-	Undecaprenyl-phosphate galactose phosphotransferase, WbaP
76	 61.33	0	75701..76525	+	274	198282224	-	Lferr_0076	-	lipopolysaccharide biosynthesis protein
77	 60.22	0	76601..76972	+	123	198282225	-	Lferr_0077	-	transcriptional regulator, MarR family
78	 63.06	0	77057..77167	+	36	198282226	-	Lferr_0078	-	hypothetical protein
79	 56.33	0	77164..78663	+	499	198282227	-	Lferr_0079	-	polysaccharide biosynthesis protein
80	 55.37	0	78653..79714	+	353	198282228	-	Lferr_0080	-	Methyltransferase type 11
81	 49.66	-1	79738..80760	+	340	198282229	-	Lferr_0081	-	glycosyl transferase family 2
82	 52.72	-1	80757..81968	+	403	198282230	-	Lferr_0082	-	glycosyl transferase group 1
83	 42.00	-2	81984..83264	+	426	198282231	-	Lferr_0083	-	hypothetical protein
84	 59.94	0	83271..84311	+	346	198282232	-	Lferr_0084	-	glycosyl transferase group 1
85	 55.77	0	84379..85305	+	308	198282233	-	Lferr_0085	-	glycosyl transferase family 2
86	 67.48	+1	85298..85666	+	122	198282234	-	Lferr_0086	-	glycosyl transferase, group 1
87	 63.96	0	86406..86627	+	73	198282235	-	Lferr_0087	-	prevent-host-death family protein
88	 64.73	+1	86627..87040	+	137	198282236	-	Lferr_0088	-	hypothetical protein
89	 61.51	0	87037..87327	+	96	198282237	-	Lferr_0089	-	hypothetical protein
90	 52.54	-1	87493..87768	+	91	198282238	-	Lferr_0090	-	plasmid maintenance system killer
91	 59.43	0	87784..88101	+	105	198282239	-	Lferr_0091	-	putative plasmid maintenance system antidote protein, XRE family
92	 66.01	+1	88077..88229	-	50	198282240	-	Lferr_0092	-	hypothetical protein
93	 60.19	0	88395..88502	-	35	198282241	-	Lferr_0093	-	hypothetical protein
94	 58.93	0	88715..89878	+	387	198282242	-	Lferr_0094	-	filamentation induced by cAMP protein Fic
95	 56.79	0	90438..90680	-	80	198282243	-	Lferr_0096	-	prevent-host-death family protein
96	 58.05	0	90764..90937	-	57	198282244	-	Lferr_0097	-	Proto-chlorophyllide reductase 57 kD subunit
97	 63.17	0	91048..91476	-	142	198282245	-	Lferr_0098	-	hypothetical protein
98	 60.42	0	91479..91910	-	143	198282246	-	Lferr_0099	-	hypothetical protein
99	 62.79	0	92056..94248	-	730	198282247	-	Lferr_0100	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
100	 58.61	0	94434..94880	+	148	198282248	-	Lferr_0101	-	hypothetical protein
58.78	MEAN

5.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.