IslandPath Analysis: Prochlorococcus marinus str. NATL2A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.61   STD DEV: 4.50
Prochlorococcus marinus str. NATL2A, complete genome - 1..1842899
2163 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.35	0	189..1349	+	386	72383165	-	PMN2A_1328	-	DNA polymerase III subunit beta
2	 31.00	-1	1352..2122	+	256	72383166	-	PMN2A_1329	-	hypothetical protein
3	 33.75	0	2126..4537	+	803	72383167	-	PMN2A_1330	-	phosphoribosylformylglycinamidine synthase II
4	 32.92	0	4599..6056	+	485	72383168	-	PMN2A_1331	-	amidophosphoribosyltransferase
5	 29.91	-1	6053..8536	-	827	72383169	-	PMN2A_1332	-	DNA topoisomerase IV subunit A
6	 26.99	-1	8620..9486	-	288	72383170	-	PMN2A_1333	-	TPR repeat-containing protein
7	 33.97	0	9492..10430	-	312	72383171	-	PMN2A_1334	-	hypothetical protein
8	 37.21	0	10623..11345	+	240	72383172	-	PMN2A_1335	-	hypothetical protein
9	 30.46	-1	11363..11989	+	208	72383173	nusB	PMN2A_1336	-	transcription antitermination protein NusB
10	 35.26	0	11986..13281	+	431	72383174	-	PMN2A_1337	-	signal recognition particle-docking protein FtsY
11	 36.91	0	13340..14737	+	465	72383175	-	PMN2A_1338	-	serine phosphatase
12	 34.91	0	14786..16177	+	463	72383176	-	PMN2A_1339	-	argininosuccinate lyase
13	 57.90	+2	16304..17056	+	250	72383177	-	PMN2A_1340	-	RNA recognition motif-containing protein
14	 33.13	0	17075..18082	-	335	72383178	-	PMN2A_1341	-	tRNA-dihydrouridine synthase A
15	 37.82	0	18172..18639	+	155	72383179	-	PMN2A_1342	-	methionine sulfoxide reductase B
16	 38.21	0	18734..19513	+	259	72383180	-	PMN2A_1343	-	molecular chaperone GrpE, heat shock protein
17	 39.52	0	19558..20688	+	376	72383181	-	PMN2A_1344	-	DnaJ-class molecular chaperone
18	 29.58	-1	20691..20930	+	79	72383182	-	PMN2A_1345	-	hypothetical protein
19	 32.16	0	20923..21861	+	312	72383183	-	PMN2A_1346	-	GTPase EngC
20	 39.66	0	21830..22177	-	115	72383184	-	PMN2A_1347	-	hypothetical protein
21	 34.13	0	22215..23090	-	291	72383185	-	PMN2A_1348	-	UDP-N-acetylmuramate dehydrogenase
22	 30.30	-1	23094..24578	-	494	72383186	-	PMN2A_1349	-	UDP-N-acetylmuramate--L-alanine ligase
23	 39.49	0	24728..25750	+	340	72383187	-	PMN2A_1350	-	glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating)
24	 34.86	0	25766..26749	-	327	72383188	-	PMN2A_1351	-	thiamine-phosphate kinase
25	 34.91	0	26762..27838	-	358	72383189	-	PMN2A_1352	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
26	 39.89	0	27902..28465	+	187	72383190	-	PMN2A_1353	-	elongation factor P
27	 41.97	+1	28462..28959	+	165	72383191	-	PMN2A_1354	-	biotin carboxyl carrier protein
28	 33.33	0	28970..29995	-	341	72383192	pdxA	PMN2A_1355	-	4-hydroxythreonine-4-phosphate dehydrogenase
29	 34.34	0	30181..31077	-	298	72383193	-	PMN2A_1356	-	NAD dependent epimerase/dehydratase
30	 29.72	-1	31086..31334	+	82	72383194	-	PMN2A_1357	-	hypothetical protein
31	 38.44	0	31338..31748	-	136	72383195	-	PMN2A_1358	-	HNH nuclease
32	 35.46	0	31900..32322	-	140	72383196	-	PMN2A_1359	-	hypothetical protein
33	 36.71	0	32520..32726	+	68	72383197	-	PMN2A_1360	-	hypothetical protein
34	 34.89	0	32750..33904	-	384	72383198	-	PMN2A_1361	-	soluble hydrogenase small subunit
35	 36.82	0	33984..35129	+	381	72383199	cbiD	PMN2A_1362	-	cobalt-precorrin-6A synthase
36	 36.86	0	35196..36782	+	528	72383200	guaA	PMN2A_1363	-	bifunctional GMP synthase/glutamine amidotransferase protein
37	 27.14	-1	37169..38911	-	580	72383201	-	PMN2A_1364	-	SAM-binding motif-containing protein
38	 32.09	0	40568..41776	-	402	72383202	-	PMN2A_1366	-	TPR repeat-containing protein
39	 37.72	0	42305..43033	+	242	72383203	-	PMN2A_1367	-	hypothetical protein
40	 34.47	0	43387..44181	+	264	72383204	-	PMN2A_1368	-	Kef-type K+ transporter NAD-binding component
41	 40.08	0	44444..44680	-	78	72383205	-	PMN2A_1369	-	hypothetical protein
42	 37.11	0	45152..45469	-	105	72383206	-	PMN2A_1370	-	hypothetical protein
43	 36.76	0	45778..46389	+	203	72383207	-	PMN2A_1371	-	hypothetical protein
44	 32.80	0	46406..46780	+	124	72383208	-	PMN2A_1372	-	hypothetical protein
45	 35.85	0	46803..48632	+	609	72383209	-	PMN2A_1373	-	putative penicillin-binding protein
46	 35.05	0	48641..49165	-	174	72383210	-	PMN2A_1374	-	putative reductase
47	 35.49	0	49216..51066	-	616	72383211	-	PMN2A_1375	-	flavodoxin:flavin reductase-like domain-containing protein
48	 36.09	0	51069..52844	-	591	72383212	-	PMN2A_1376	-	metallo-beta-lactamase domain-containing protein
49	 35.51	0	53139..55799	+	886	72383213	alaS	PMN2A_1377	-	alanyl-tRNA synthetase
50	 34.77	0	55801..57744	-	647	72383214	-	PMN2A_1378	-	arginine decarboxylase
51	 39.04	0	57887..58342	+	151	72383215	-	PMN2A_1379	-	nucleoside diphosphate kinase
52	 39.86	0	58377..59480	-	367	72383216	-	PMN2A_1380	-	glycine/D-amino acid oxidase family protein
53	 35.84	0	59580..61055	+	491	72383217	gatB	PMN2A_1381	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
54	 30.23	-1	61052..61696	-	214	72383218	-	PMN2A_1382	-	dephospho-CoA kinase
55	 38.80	0	61712..62974	+	420	72383219	argJ	PMN2A_1383	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
56	 37.17	0	63185..64642	-	485	72383220	-	PMN2A_1384	-	hypothetical protein
57	 35.56	0	64723..66117	-	464	72383221	-	PMN2A_1385	-	putative Poly(3-hydroxybutyrate) depolymerase
58	 43.48	+1	66300..66575	-	91	72383222	-	PMN2A_1386	-	cupin superfamily protein
59	 38.65	0	66749..66955	+	68	162958157	-	PMN2A_1897	-	hypothetical protein
60	 34.53	0	67047..67379	+	110	72383223	-	PMN2A_1387	-	hypothetical protein
61	 30.80	-1	67493..68083	+	196	72383224	-	PMN2A_1388	-	hypothetical protein
62	 36.52	0	68786..70480	-	564	72383225	-	PMN2A_1389	-	C-type lectin
63	 30.13	-1	71080..71235	+	51	162958219	-	PMN2A_1898	-	hypothetical protein
64	 35.81	0	71461..71904	+	147	72383226	-	PMN2A_1390	-	cyanate hydratase
65	 34.40	0	72418..74097	+	559	72383227	-	PMN2A_1391	-	hypothetical protein
66	 33.33	0	74542..74715	+	57	72383228	-	PMN2A_1392	-	hypothetical protein
67	 31.72	0	74874..75059	+	61	72383229	-	PMN2A_1393	-	hypothetical protein
68	 32.73	0	75280..75444	+	54	162958308	-	PMN2A_1899	-	hypothetical protein
69	 36.72	0	75868..76044	+	58	162958315	-	PMN2A_1900	-	hypothetical protein
70	 32.89	0	76066..76293	-	75	162958119	-	PMN2A_1901	-	hypothetical protein
71	 34.69	0	76470..76616	-	48	162958179	-	PMN2A_1902	-	hypothetical protein
72	 30.06	-1	76871..77206	-	111	72383230	-	PMN2A_1394	-	hypothetical protein
73	 33.52	0	77823..78368	-	181	72383231	-	PMN2A_1395	-	hypothetical protein
74	 31.45	0	78618..78935	+	105	72383232	-	PMN2A_1396	-	hypothetical protein
75	 27.70	-1	79037..79249	-	70	162958249	-	PMN2A_1903	-	hypothetical protein
76	 37.46	0	79401..79715	-	104	72383233	-	PMN2A_1397	-	hypothetical protein
77	 30.30	-1	80030..80425	+	131	72383234	-	PMN2A_1398	-	hypothetical protein
78	 27.84	-1	80425..81534	+	369	72383235	-	PMN2A_1399	-	hypothetical protein
79	 34.43	0	81686..81958	+	90	72383236	-	PMN2A_1400	-	hypothetical protein
80	 35.97	0	82021..82323	-	100	72383237	-	PMN2A_1401	-	hypothetical protein
81	 37.22	0	82575..82934	-	119	72383238	-	PMN2A_1402	-	hypothetical protein
82	 33.00	0	83006..84793	+	595	72383239	-	PMN2A_1403	-	peptidyl-prolyl cis-trans isomerase
83	 37.30	0	85097..85222	+	41	72383240	-	PMN2A_1404	-	high light inducible protein
84	 39.18	0	85313..85483	-	56	72383241	-	PMN2A_1405	-	hypothetical protein
85	 31.30	0	85929..86174	+	81	72383242	-	PMN2A_1406	-	hypothetical protein
86	 27.04	-1	86327..86866	+	179	72383243	-	PMN2A_1407	-	hypothetical protein
87	 35.26	0	87482..88156	+	224	72383244	-	PMN2A_1408	-	short-chain dehydrogenase/reductase family protein
88	 26.67	-1	88233..88532	-	99	72383245	-	PMN2A_1409	-	hypothetical protein
89	 40.18	+1	88751..89422	+	223	72383246	-	PMN2A_1410	-	hypothetical protein
90	 34.26	0	89621..91456	-	611	72383247	-	PMN2A_1411	-	ATPase
91	 23.73	-2	91647..92156	-	169	72383248	-	PMN2A_1412	-	hypothetical protein
92	 30.23	-1	92204..93268	+	354	72383249	-	PMN2A_1413	-	mannosyltransferase
93	 29.41	-1	93434..93637	+	67	162958113	-	PMN2A_1904	-	hypothetical protein
94	 37.11	0	93803..94120	+	105	72383250	-	PMN2A_1414	-	hypothetical protein
95	 37.29	0	94198..94374	-	58	162958312	-	PMN2A_1905	-	hypothetical protein
96	 33.33	0	94539..94724	-	61	162958262	-	PMN2A_1906	-	hypothetical protein
97	 35.20	0	95016..96140	+	374	72383251	-	PMN2A_1415	-	putative RNA methylase
98	 38.24	0	96142..96528	-	128	72383252	-	PMN2A_1416	-	hypothetical protein
99	 40.35	+1	96528..96983	-	151	72383253	-	PMN2A_1417	-	hypothetical protein
100	 41.30	+1	97211..97348	+	45	72383254	-	PMN2A_1418	-	hypothetical protein
35.61	MEAN

4.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.